Clc09G21540 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G21540
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 34965520 .. 34967172 (-)
RNA-Seq ExpressionClc09G21540
SyntenyClc09G21540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACTCGGAGCAGACAAATGTGCGATGGTATACTCGAATCGAACGAAAAGAGACTAAACGACGAACGACAGAAGGTGGTATGGCAATTAACACACGATGGACCATCGAATGACGATAGTTGGGCATGGACAGCAAACGCAAACCAAGGAGCCTCTTTTATTTTATTTTTCACCTCCTCTCTCCATATATAACATGAATCTACTGGTAAAACTAGTGACTTGATATGTGTAATTCAGTAAATGAAAAGAAAAATTATATTAAATTATTTTCCCACTCCAATTGGAAATATAAGAAAATATCAAATAATTAATATATTTTGGTTTGAAAAATTCATTGACTGTTATATATGAAAATATTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTGGAAAATAAGTTTTAAAAATGGATTGAATCCATAATAACCTTTTTTTCCATTCTAGCAGGGACAAATGTCCAAATTATTTTAGCATTAAGCCCAGCCCACTAATACAAGCGTCAGCCCAAATTTGAGATTCCAAATTAGACCAAATTTAACTTTTAATTTAATTAATCCATCTTCCTCGTTTACTCTGTCCCAATCCCAAGTTGGAAAATCAAAGCCCTAGCTCCTTCTCAACTCCCTTCCTCTTCTCTCTTCAGTTCTCTCCCTCATTTCATCAGCTGTTTTGTTTTGCACGATGCTATCAGGTAACTTCCATTCCATCTCATTTCTGTACTTCTCATCCCATAATTTCTCTAATTCTATACTCATTACTATATCTGATTTCTCTTTCGCATCTTTCAACTTTCTTCGATTTAGGGTTCAAAGATTTTGTTGAATTCAAGACCCTGATCCCTTCAACCTGCTGGACTGTGGGCATGTTTGAGAGTGATTTCTAATATCATTTTTGTCTGCTTCAAATTCACACTCAAACATGTCTTTAATAATTCAAAATCAATTTTAACATTTGATTTTGCACTTTTGAATATGATTTCCATATAATCAAGCGGTTCTAAATTATTGAATCCATGTTTCGTAATGATTTTGAATACAATAGAAGTGATTTTCATCCTTCCAAAATCCTTTTGTCATTTCCTCCTTTGGGTCGGATCAATTTTATATTTGAAGGGTTCGTTATAGACAGACAACAGGTTTCTCTGTTTCTCTTTTATTATATTTAAATTCATACGACAAGAAAAGATCATCAGTAGGTGTAGGACAATAACCCAATAAGAAGAAAGAAACATTATCATAACCTTTTTATTCATTTGCAGGCACTCAATCAAAATTGAAACATATTCTCAGTGTTACAGACTTGTGTACACACTGTCCACTCTACTTTCAGAATCAAAGAGAAAAGAGAATGCAATTCAGAACGAAAAGGCGAAACGAAAGTCAAAGAAGTTTCATCCAATCAGCTCGACGAAGAGAGACGCCAGAACCGTGGTGGGATCTCCAAGAACGATACTAACAATGGTCTTGATGAAGACCTTAAGGATTCTCCAAAACTTGTTCCCTTTTCCGCCATCCCCACGCCCTCGTGCTTGAAGTGCTTTCAGATTCACCTTCTGAAGAGCCAACTGTTGGTCCTGGTTGGCATTATCGGCATTGATCCAGTCTCCTCCGCTCTTGTACCATTCTTCTAA

mRNA sequence

ATGGCGGACTCGGAGCAGACAAATGTGCGATGGTATACTCGAATCGAACGAAAAGAGACTAAACGACGAACGACAGAAGGTGGGTTCAAAGATTTTGTTGAATTCAAGACCCTGATCCCTTCAACCTGCTGGACTGTGGGCATAATCAAAGAGAAAAGAGAATGCAATTCAGAACGAAAAGGCGAAACGAAAGTCAAAGAAGTTTCATCCAATCAGCTCGACGAAGAGAGACGCCAGAACCGTGGTGGGATCTCCAAGAACGATACTAACAATGGTCTTGATGAAGACCTTAAGGATTCTCCAAAACTTGTTCCCTTTTCCGCCATCCCCACGCCCTCGTGCTTGAAGTGCTTTCAGATTCACCTTCTGAAGAGCCAACTGTTGGTCCTGGTTGGCATTATCGGCATTGATCCAGTCTCCTCCGCTCTTGTACCATTCTTCTAA

Coding sequence (CDS)

ATGGCGGACTCGGAGCAGACAAATGTGCGATGGTATACTCGAATCGAACGAAAAGAGACTAAACGACGAACGACAGAAGGTGGGTTCAAAGATTTTGTTGAATTCAAGACCCTGATCCCTTCAACCTGCTGGACTGTGGGCATAATCAAAGAGAAAAGAGAATGCAATTCAGAACGAAAAGGCGAAACGAAAGTCAAAGAAGTTTCATCCAATCAGCTCGACGAAGAGAGACGCCAGAACCGTGGTGGGATCTCCAAGAACGATACTAACAATGGTCTTGATGAAGACCTTAAGGATTCTCCAAAACTTGTTCCCTTTTCCGCCATCCCCACGCCCTCGTGCTTGAAGTGCTTTCAGATTCACCTTCTGAAGAGCCAACTGTTGGTCCTGGTTGGCATTATCGGCATTGATCCAGTCTCCTCCGCTCTTGTACCATTCTTCTAA

Protein sequence

MADSEQTNVRWYTRIERKETKRRTTEGGFKDFVEFKTLIPSTCWTVGIIKEKRECNSERKGETKVKEVSSNQLDEERRQNRGGISKNDTNNGLDEDLKDSPKLVPFSAIPTPSCLKCFQIHLLKSQLLVLVGIIGIDPVSSALVPFF
Homology
[Close]
BLAST of Clc09G21540 vs. NCBI nr
Match: KAG6578701.1 (hypothetical protein SDJN03_23149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-13
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 33  VEFKTLIPSTCWTVGIIKEKRECNSERKGETKVKEVSSNQLDEERRQNRGGISKNDTNNG 92
           +E +T      W+    KEK + NSER+GETKVKEVS NQLD+E  QNRGGI KNDTN+G
Sbjct: 94  IEIQTWYYKRFWS----KEKMKYNSEREGETKVKEVSCNQLDKEAGQNRGGIPKNDTNDG 153

Query: 93  LDEDLKDSPKLVPFSA-IPT 112
           LDEDL+DS  LV FSA +PT
Sbjct: 154 LDEDLEDSQHLVTFSAFLPT 169

[Close]
BLAST of Clc09G21540 vs. NCBI nr
Match: KAG6578703.1 (hypothetical protein SDJN03_23151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 49  IKEKRECNSERKGETKVKEVSSNQLDEERRQNRGGISKNDTNNGLDEDLKDSPKLVPFS 108
           +KEK + NSER+GETKV+EVS NQLD+E  QNRGGI KNDT +GLDEDL+DS  LV  S
Sbjct: 22  VKEKMKYNSEREGETKVEEVSCNQLDKEGGQNRGGIPKNDTKDGLDEDLEDSQHLVTSS 80

The following BLAST results are available for this feature:
BLAST of Clc09G21540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578701.15.5e-1362.50hypothetical protein SDJN03_23149, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578703.15.6e-1069.49hypothetical protein SDJN03_23151, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc09G21540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G21540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G21540 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G21540.2Clc09G21540.2mRNA