Clc09G21050 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G21050
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cyclin-dependent protein kinase inhibitor SMR6
Location	ClcChr09: 34560041 .. 34560789 (+)
RNA-Seq Expression	Clc09G21050
Synteny	Clc09G21050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGTTTCCTTTCACTCCTTTTCTTTTTTCTCATTTCCCTCCTAATTTCCCTTCCTCCTCCGTTTCTTTCTCCGAATAAACCCTCAAACGATTCCTCTGTTTTTTTTCATTCTCTTCTCCCTTTTCCCAACTTTTCTGGGTGTTTTTTTTTCTTCCATTTTATTGGATTTCAAATGGGATTCTCCAAAAAGTCTCAAATCGATGGCGGATTTGAAGCAGAGGGAAAAAAATGGGTAATCGCCGGGTTGCCGCCAAGGTCATCGTTGAAGCCGATTAACACAAAATCGAAGGCGAAAGACGGCGATGACGACGGCGAGAAGACTCCGACGGCGAAAGAAGCTAGAATACCGGAGAAACTGGGTTGCCCGCCGGCGCCGAGAAAGCGTAGATCTCTAAAATCAAGCTCTAATCAAAATCATATGAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTCAAGCTTCGAGTTTAAAAGAGCCAATTGGGTTTGTAATAGTTGAGAATTTAGGGGTTTCACTTTTTTTTTTCTTTTTTTTTTTTGGGTGTTTGTTTAATTTTTCTCTTCTTTTTGGGGGGTTTTCTTTTTACTATTCTTATTTTTTGTGTACTTGGTTAGTTGTTAGGACTTGAGAGTAAGGTGATTATGATGTACAAAGGATTTGAAATTTGTTATCTAATTGAGTATTATTCTAGTTTAGCTTTGTTCAAATTTTCCCATGAAACAAACAAATAAACCCAGATGAG

mRNA sequence

CAAAGTTTCCTTTCACTCCTTTTCTTTTTTCTCATTTCCCTCCTAATTTCCCTTCCTCCTCCGTTTCTTTCTCCGAATAAACCCTCAAACGATTCCTCTGTTTTTTTTCATTCTCTTCTCCCTTTTCCCAACTTTTCTGGGTGTTTTTTTTTCTTCCATTTTATTGGATTTCAAATGGGATTCTCCAAAAAGTCTCAAATCGATGGCGGATTTGAAGCAGAGGGAAAAAAATGGGTAATCGCCGGGTTGCCGCCAAGGTCATCGTTGAAGCCGATTAACACAAAATCGAAGGCGAAAGACGGCGATGACGACGGCGAGAAGACTCCGACGGCGAAAGAAGCTAGAATACCGGAGAAACTGGGTTGCCCGCCGGCGCCGAGAAAGCGTAGATCTCTAAAATCAAGCTCTAATCAAAATCATATGAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTCAAGCTTCGAGTTTAAAAGAGCCAATTGGGTTTGTAATAGTTGAGAATTTAGGGGTTTCACTTTTTTTTTTCTTTTTTTTTTTTGGGTGTTTGTTTAATTTTTCTCTTCTTTTTGGGGGGTTTTCTTTTTACTATTCTTATTTTTTGTGTACTTGGTTAGTTGTTAGGACTTGAGAGTAAGGTGATTATGATGTACAAAGGATTTGAAATTTGTTATCTAATTGAGTATTATTCTAGTTTAGCTTTGTTCAAATTTTCCCATGAAACAAACAAATAAACCCAGATGAG

Coding sequence (CDS)

ATGGGATTCTCCAAAAAGTCTCAAATCGATGGCGGATTTGAAGCAGAGGGAAAAAAATGGGTAATCGCCGGGTTGCCGCCAAGGTCATCGTTGAAGCCGATTAACACAAAATCGAAGGCGAAAGACGGCGATGACGACGGCGAGAAGACTCCGACGGCGAAAGAAGCTAGAATACCGGAGAAACTGGGTTGCCCGCCGGCGCCGAGAAAGCGTAGATCTCTAAAATCAAGCTCTAATCAAAATCATATGAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTCAAGCTTCGAGTTTAA

Protein sequence

MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV

Homology

[Close]

BLAST of Clc09G21050 vs. NCBI nr
Match: XP_038890813.1 (cyclin-dependent protein kinase inhibitor SMR6 [Benincasa hispida])

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-46
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPE 60
           MGFSKKSQIDGGFEAEGKKWVIAGLP RSSLKPI+TKSKAKDG+DDGEKTPTAKEARIPE
Sbjct: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPTRSSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 60

Query: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           KLGCPPAPRKRRSLKSSSNQN++REFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNYIREFFNPPDLESVFKLRV 100

[Close]

BLAST of Clc09G21050 vs. NCBI nr
Match: XP_008458799.1 (PREDICTED: uncharacterized protein LOC103498100 [Cucumis melo] >KAA0037576.1 uncharacterized protein E6C27_scaffold277G002090 [Cucumis melo var. makuwa] >TYK03096.1 uncharacterized protein E5676_scaffold374G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPE 60
           MGFSKKSQID GFEAE KKWVIAGL  RSSLKPINTKSK K+G++DGEKTPT KEARIPE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEKTPTGKEARIPE 60

Query: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Clc09G21050 vs. NCBI nr
Match: XP_004142790.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucumis sativus] >KGN51361.1 hypothetical protein Csa_008029 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPE 60
           MGFSKKSQID GFE E KKWVIAGL  RSSLKPINTKSK K+G+DDG+KTPT KEARIPE
Sbjct: 1   MGFSKKSQIDTGFEPEPKKWVIAGLSARSSLKPINTKSKTKEGEDDGDKTPTGKEARIPE 60

Query: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Clc09G21050 vs. NCBI nr
Match: XP_023550994.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-42
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEK----TPTAKEA 60
           MGFSKKSQIDGGFE EGKKWVIAGLP RSSLKPI TKS+AKDGDDDGEK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGDDDGEKSRSTTPTAKEA 60

Query: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Clc09G21050 vs. NCBI nr
Match: KAG7016206.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEK----TPTAKEA 60
           MGFSKKSQIDGGFE EGKKWVIAGLP RSSLKPI TKS+AKDG+DDGEK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60

Query: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Clc09G21050 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-22
Identity = 62/113 (54.87%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAK------------DGDDDGE 60
           MGFSKKSQ +GG E++GKKWVIAG+  R+SLKP+ TK +A             + +++  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  KTPTAKEARIPEKLGCPPAPRKRR-SLKSSSNQNHMREFFNPP-DLESVFKLR 100
            TPTAKE +IPE L CPPAPRKRR +LK  SN   +REFF PP DLE+VF  R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVFLRR 111

[Close]

BLAST of Clc09G21050 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.6e-13
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MGFSKKS--QIDGGFE--AEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGE---KTPTA 60
           MGFS K+  Q D  F    EGKK VI G+   S++KPI+  S A    +D +    TPTA
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTA 60

Query: 61  KEARIPEKLGCPPAPRKRR-SLKSSSNQNHMREFFNPPDLESVFKLR 100
              RIP  + CPPAP+KR+ +LK S      REFF+PPDLE+VF  R
Sbjct: 61  DSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVFIYR 104

[Close]

BLAST of Clc09G21050 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 46/104 (44.23%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MGFSKK--SQIDGGF--EAEGKKWVIAGLPPRSSLKPINTKS----KAKDGDDDGEKTPT 60
           MG+S K   Q+DG      +GKKWVIAG+P RS LK IN          +  D    TPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 61  AKEARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVF 97
           A   RIP    CP AP+KR+     S     R++F+PPDLE+VF
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Clc09G21050 vs. ExPASy Swiss-Prot
Match: Q9LVX6 (Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 GN=SMR7 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 1  MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTK--SKAKDGDDDGEKTPTAKEARI 60
          MG SKKSQ+    + +GKK++ A    R+SLKP+ TK     ++ +D    TPTA+ A+ 
Sbjct: 1  MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDGICITPTARGAKT 60

Query: 61 PEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVF 97
          PE   CP APRKR  +    N   +  F  P D E VF
Sbjct: 61 PE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Clc09G21050 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-05
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 50  TPTAKEARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVF 97
           TP AK++RIPE L CPPAP+K+R  K+   +     FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Clc09G21050 vs. ExPASy TrEMBL
Match: A0A5D3BY33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00180 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPE 60
           MGFSKKSQID GFEAE KKWVIAGL  RSSLKPINTKSK K+G++DGEKTPT KEARIPE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEKTPTGKEARIPE 60

Query: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Clc09G21050 vs. ExPASy TrEMBL
Match: A0A1S3C883 (uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPE 60
           MGFSKKSQID GFEAE KKWVIAGL  RSSLKPINTKSK K+G++DGEKTPT KEARIPE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEKTPTGKEARIPE 60

Query: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Clc09G21050 vs. ExPASy TrEMBL
Match: A0A0A0KUE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523070 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.3e-43
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEKTPTAKEARIPE 60
           MGFSKKSQID GFE E KKWVIAGL  RSSLKPINTKSK K+G+DDG+KTPT KEARIPE
Sbjct: 1   MGFSKKSQIDTGFEPEPKKWVIAGLSARSSLKPINTKSKTKEGEDDGDKTPTGKEARIPE 60

Query: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Clc09G21050 vs. ExPASy TrEMBL
Match: A0A6J1JVL3 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111489273 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 90/104 (86.54%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEK----TPTAKEA 60
           MGFSKKSQIDGG EAEGKKWVIAGLP RSSLKPI+TKS+AKDG+DD EK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDDCEKSRSTTPTAKEA 60

Query: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Clc09G21050 vs. ExPASy TrEMBL
Match: A0A6J1FHD8 (cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=LOC111445393 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGEK----TPTAKEA 60
           MGFSKKSQIDGGFE EGKKWVIAGLP RSSLKPI TK +AKDG+DDGEK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDDGEKSHSTTPTAKEA 60

Query: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 101
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Clc09G21050 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-23
Identity = 62/113 (54.87%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTKSKAK------------DGDDDGE 60
           MGFSKKSQ +GG E++GKKWVIAG+  R+SLKP+ TK +A             + +++  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  KTPTAKEARIPEKLGCPPAPRKRR-SLKSSSNQNHMREFFNPP-DLESVFKLR 100
            TPTAKE +IPE L CPPAPRKRR +LK  SN   +REFF PP DLE+VF  R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVFLRR 111

[Close]

BLAST of Clc09G21050 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 4.7e-14
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MGFSKKS--QIDGGFE--AEGKKWVIAGLPPRSSLKPINTKSKAKDGDDDGE---KTPTA 60
           MGFS K+  Q D  F    EGKK VI G+   S++KPI+  S A    +D +    TPTA
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTA 60

Query: 61  KEARIPEKLGCPPAPRKRR-SLKSSSNQNHMREFFNPPDLESVFKLR 100
              RIP  + CPPAP+KR+ +LK S      REFF+PPDLE+VF  R
Sbjct: 61  DSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVFIYR 104

[Close]

BLAST of Clc09G21050 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 46/104 (44.23%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MGFSKK--SQIDGGF--EAEGKKWVIAGLPPRSSLKPINTKS----KAKDGDDDGEKTPT 60
           MG+S K   Q+DG      +GKKWVIAG+P RS LK IN          +  D    TPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 61  AKEARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVF 97
           A   RIP    CP AP+KR+     S     R++F+PPDLE+VF
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Clc09G21050 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 1  MGFSKKSQIDGGFEAEGKKWVIAGLPPRSSLKPINTK--SKAKDGDDDGEKTPTAKEARI 60
          MG SKKSQ+    + +GKK++ A    R+SLKP+ TK     ++ +D    TPTA+ A+ 
Sbjct: 1  MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDGICITPTARGAKT 60

Query: 61 PEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVF 97
          PE   CP APRKR  +    N   +  F  P D E VF
Sbjct: 61 PE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Clc09G21050 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 50  TPTAKEARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVF 97
           TP AK++RIPE L CPPAP+K+R  K+   +     FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

The following BLAST results are available for this feature:

BLAST of Clc09G21050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890813.1	5.7e-46	95.00	cyclin-dependent protein kinase inhibitor SMR6 [Benincasa hispida]	[more]
XP_008458799.1	2.6e-43	91.00	PREDICTED: uncharacterized protein LOC103498100 [Cucumis melo] >KAA0037576.1 unc...	[more]
XP_004142790.1	1.3e-42	90.00	cyclin-dependent protein kinase inhibitor SMR6 [Cucumis sativus] >KGN51361.1 hyp...	[more]
XP_023550994.1	5.0e-42	88.46	cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo]	[more]
KAG7016206.1	1.4e-41	87.50	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]

BLAST of Clc09G21050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29Q81	3.5e-22	54.87	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	6.6e-13	47.66	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SAD3	1.5e-12	44.23	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LVX6	3.1e-10	40.82	Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 G...	[more]
F4IWB3	6.6e-05	48.94	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Clc09G21050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY33	1.3e-43	91.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C883	1.3e-43	91.00	uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=...	[more]
A0A0A0KUE2	6.3e-43	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523070 PE=4 SV=1	[more]
A0A6J1JVL3	7.7e-41	86.54	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FHD8	7.7e-41	86.54	cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Clc09G21050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	2.5e-23	54.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	4.7e-14	47.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	1.0e-13	44.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G27630.1	2.2e-11	40.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G20898.1	4.7e-06	48.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..90
None	No IPR available	PANTHER	PTHR33142:SF40	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR6-RELATED	coord: 1..100
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G21050.1	Clc09G21050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus