Clc09G20990 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G20990
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionEmsy N Terminus/ plant Tudor-like domains-containing protein isoform 1
LocationClcChr09: 34511461 .. 34514119 (+)
RNA-Seq ExpressionClc09G20990
SyntenyClc09G20990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGCCATTACATTAGGGTCATCAGGGTTGTCTTCAAGCGCCACCTACACCGGCCGTAGCAATCCTGCCATAATACGCCCCAGAACGCGCGGCAGCCGCGGGAGGATGAGGCAGATCAGGTACCGGAGACGCAACAGGTGTAGGCCCCGTAGTAGGCTGTGCTGCGCAGACTACCCTTACTAATCTGAACATAAACAAAAATTAAAATAAATAAATAAAAATAAAGGGAGACGGAGGAAAAATTTTGTGCACTTAAATGTACAATGTATTAGATGCTTCCCAATATTATATTATAACTGTATATGTAACATACATTTACTCTAATAGATGGTTACATTCAAAAGTTTCAATATAACATGATCTAACATATATTGTTTAATCAAATTTTTTTTATCAGTTATACCACACTATATAAATAAAAAATGAATTCAATGTTCAACTTAAAACATATATACAAGCGTATATATGTATATCATAGTATAAAATAAACGAATATATATCATAGTGTGTGTGTATATATATATATATATATATAAAATAAACAAATATATATCACAAAATATATATGTACATTTATTCATCTCCTCTTCTCTGTTAAGCACTTACCGTTGTCGCCTATCCCCACCTTCTTTACGAAGCCTTAAATCTACCATTGTGCCTTCCACCTTAACCACAAACTCTTATGCTATGTATGGGGGAGATACATGAAACTTAGGTATTTTTTCTAATTTTTGTATTTTATAAAAATCATGCGACCTTAATGGTAAATAAACACTAACATTAATGAAAATTTTGTAGTCTATTAGGCTATTTCTAAAATAAATTGAAGGTAGACAATAATGTAATATAGACCTATAATCAAGGCTATCTATGTAATATAGAACTATAATAAATTGTATGGTTTTAATACTTTTTTTGGAAAAAATATTAAAACCATACAATTTTCTAAAATATCCACAACTTTCCATCTTCTTCAATTTCTCTCTCAAAACCCTATCTCAGATCTTTGTGTGTTTCCATATGCTGTCGTCTCAGATCTGGACCATTGCTTGAGTCTTCGACGTGCAGATCATGTCATTTTGCATTTTTGTCACCCTTTCTCTCATGCATCTGATTGCCGCGCAGCCTGTAGTTGCTGCCATGCATCGCTGTTCATAATCATTTGCAAGTCATCGCCTCAAAACCGTTCGATTGCGTCGCTCAGCCAACCGTCAGTCCCATGCCCCTTTCTATCAAGCACCGCCACCGTGAACGGCCGTGTCTCAGATATACTGTAATATATTTTTTTTATCATAGATACTATAATATATATTCAGGTATTAAGATGGTTTGAGATTTAGGCTTTAGGTTTTAAGGTAGATACCCTGTCATATGATCCTATTTGGTGGTTTTATGGTATATATCTTGTCATATATATGTTTTATGTTAGAGTCCATCTTTGATTTATAGACGGTGGCATATACTATGAATTATGTAGAAAATTGAGTTGATTTGGGATTTATACATACCGTGGTAAATATTTCTGTTTATATCTGACTAATTTGAATTAATAATATATACTATGATATAAATAGAATTTATGATATATACTGTGATTCAAATGGTACAACCATCCATTTGAGTACATTTATATTTCATATATTGGTTAGAATATTTGCAAACATATAATATAATGTTGGTATATATTTAAAAATAACCTTGATCTAGTATATTTCAATATTGGTTAGAACAATGCAAACATATAATACAATCTTCTATGGAATACTTAAAAATATCAATGAATCTACCAGTATCGCCTTCATATGTTAAATGAAAAATAAAATTATATTAAATGCATTTTTCTCTTTTCCATTAAAAATAGAAATATATTTTAACATAATTAATAGTATATAATAAATACATTTTCTCTCTCCAACATTAAAGATATTTCATAAATATAACAAAATATATAATAAATTCGTTTTCTACCCATTATCTAGGATATTTTTGTCCGAAAATAAAAGTTAAATTCTTTATATAAAATATCCAAATATTTAAACATTTATAAAAATAAGTTTTAAAAAAGGGTTGAATCTAATAATCCCGGGGGAAAACTTTCTTTTAATTAACATTTTCATAATACATAATCTATTTTTTTTAAAAAAAAAAATCATGTACACCATTGAGGTAAGAGGCCAACTTCAATAATTGAAAATATATATATATTTATAATTAAGAAAGAGAAAATACAAACTTTGGTAATATGACATAATCACATCACAAACCCATCATTAAAAAACAGACCCAAAAGAAAATAAAAGATTTGAATCCAAATGTAATTAAAGAGCAATTGAAATTCCTCTTCAATTACAAAACCACATCTTCTCCATTCCATTTATTAAACATAGAGAGAGAAATGAAGAAGAAGGGTTTAAGGTTGAGTGGATTTGCCATTTTTCTTCTGATTCTGATTCAGATCTTCACAATCAGCTCTTCATTCTGTTTCGGCGACGAAGAGATGGAAAGAAAAAGCTTAGAAAGAAGAAGAATGGTTGATTCCATGGCGGACTCTGTTTCTGGAAATGGAAGATCCGCCATTGAAGAGCCCAAGAAAGCTGTGGAACAGAGCTTCAGAAAGGCGCCGCCCACTGGAGCAAATCCCATTCAGAATAAGTAG

mRNA sequence

ATGGTCGCCATTACATTAGGGTCATCAGGGTTGTCTTCAAGCGCCACCTACACCGGCCGTAGCAATCCTGCCATAATACGCCCCAGAACGCGCGGCAGCCGCGGGAGGATGAGGCAGATCAGGTACCGGAGACGCAACAGGTATCTGGACCATTGCTTGAGTCTTCGACGTGCAGATCATGTCATTTTGCATTTTTGTCACCCTTTCTCTCATGCATCTGATTGCCGCGCAGCCTGTAGTTGCTGCCATGCATCGCTGTTCATAATCATTTGCAAGTCATCGCCTCAAAACCGTTCGATTGCGTCGCTCAGCCAACCGTCAGTCCCATGCCCCTTTCTATCAAGCACCGCCACCGTGAACGGCCGTGTCTCAGATATACTGTTGAGTGGATTTGCCATTTTTCTTCTGATTCTGATTCAGATCTTCACAATCAGCTCTTCATTCTGTTTCGGCGACGAAGAGATGGAAAGAAAAAGCTTAGAAAGAAGAAGAATGGTTGATTCCATGGCGGACTCTGTTTCTGGAAATGGAAGATCCGCCATTGAAGAGCCCAAGAAAGCTGTGGAACAGAGCTTCAGAAAGGCGCCGCCCACTGGAGCAAATCCCATTCAGAATAAGTAG

Coding sequence (CDS)

ATGGTCGCCATTACATTAGGGTCATCAGGGTTGTCTTCAAGCGCCACCTACACCGGCCGTAGCAATCCTGCCATAATACGCCCCAGAACGCGCGGCAGCCGCGGGAGGATGAGGCAGATCAGGTACCGGAGACGCAACAGGTATCTGGACCATTGCTTGAGTCTTCGACGTGCAGATCATGTCATTTTGCATTTTTGTCACCCTTTCTCTCATGCATCTGATTGCCGCGCAGCCTGTAGTTGCTGCCATGCATCGCTGTTCATAATCATTTGCAAGTCATCGCCTCAAAACCGTTCGATTGCGTCGCTCAGCCAACCGTCAGTCCCATGCCCCTTTCTATCAAGCACCGCCACCGTGAACGGCCGTGTCTCAGATATACTGTTGAGTGGATTTGCCATTTTTCTTCTGATTCTGATTCAGATCTTCACAATCAGCTCTTCATTCTGTTTCGGCGACGAAGAGATGGAAAGAAAAAGCTTAGAAAGAAGAAGAATGGTTGATTCCATGGCGGACTCTGTTTCTGGAAATGGAAGATCCGCCATTGAAGAGCCCAAGAAAGCTGTGGAACAGAGCTTCAGAAAGGCGCCGCCCACTGGAGCAAATCCCATTCAGAATAAGTAG

Protein sequence

MVAITLGSSGLSSSATYTGRSNPAIIRPRTRGSRGRMRQIRYRRRNRYLDHCLSLRRADHVILHFCHPFSHASDCRAACSCCHASLFIIICKSSPQNRSIASLSQPSVPCPFLSSTATVNGRVSDILLSGFAIFLLILIQIFTISSSFCFGDEEMERKSLERRRMVDSMADSVSGNGRSAIEEPKKAVEQSFRKAPPTGANPIQNK
Homology
[Close]
BLAST of Clc09G20990 vs. NCBI nr
Match: ONH95523.1 (hypothetical protein PRUPE_7G075600 [Prunus persica] >CAB4286843.1 unnamed protein product [Prunus armeniaca] >CAB4317213.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-04
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 132 AIFLLILIQIFTISSSFCFGDE-----EMERKSLERRRM---VDSMADSVSGNGRSAIEE 191
           ++F LILI+I  + SSFC   E       ER+SL RR +   V S++ S       A++E
Sbjct: 5   SLFALILIEIL-LCSSFCLCHEVKIFQGRERRSLSRRLLSIPVVSVSPSRLSTSSGAMKE 64

Query: 192 PKKAVEQSFRKAPPTGANPIQNK 207
           PKKAVE S R+ PP+G+NPIQNK
Sbjct: 65  PKKAVESSMRRKPPSGSNPIQNK 86

[Close]
BLAST of Clc09G20990 vs. NCBI nr
Match: KAB2608119.1 (hypothetical protein D8674_011287 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-04
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 132 AIFLLILIQIFTISSSFCFGDE-----EMERKSLERRRMVDSMADSVSGNGRSAIEEPKK 191
           ++F LILI+I  +  SFC   E       ERK+L R+ ++  MA S+SG+ R A++EPKK
Sbjct: 6   SLFALILIEIL-LCCSFCLCREVQIFPRRERKTLSRKLLLIPMA-SLSGSSR-AMKEPKK 65

Query: 192 AVEQSFRKAPPTGANPIQNK 207
           AVE S R+ PP+ +NPIQN+
Sbjct: 66  AVESSMRRKPPSTSNPIQNR 82

[Close]
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match: M5W792 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G075600 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-05
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 132 AIFLLILIQIFTISSSFCFGDE-----EMERKSLERRRM---VDSMADSVSGNGRSAIEE 191
           ++F LILI+I  + SSFC   E       ER+SL RR +   V S++ S       A++E
Sbjct: 5   SLFALILIEIL-LCSSFCLCHEVKIFQGRERRSLSRRLLSIPVVSVSPSRLSTSSGAMKE 64

Query: 192 PKKAVEQSFRKAPPTGANPIQNK 207
           PKKAVE S R+ PP+G+NPIQNK
Sbjct: 65  PKKAVESSMRRKPPSGSNPIQNK 86

[Close]
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match: A0A6J5VFA8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44578 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-05
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 132 AIFLLILIQIFTISSSFCFGDE-----EMERKSLERRRM---VDSMADSVSGNGRSAIEE 191
           ++F LILI+I  + SSFC   E       ER+SL RR +   V S++ S       A++E
Sbjct: 5   SLFALILIEIL-LCSSFCLCHEVKIFQGRERRSLSRRLLSIPVVSVSPSRLSTSSGAMKE 64

Query: 192 PKKAVEQSFRKAPPTGANPIQNK 207
           PKKAVE S R+ PP+G+NPIQNK
Sbjct: 65  PKKAVESSMRRKPPSGSNPIQNK 86

[Close]
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match: A0A5N5FYA0 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_011287 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 132 AIFLLILIQIFTISSSFCFGDE-----EMERKSLERRRMVDSMADSVSGNGRSAIEEPKK 191
           ++F LILI+I  +  SFC   E       ERK+L R+ ++  MA S+SG+ R A++EPKK
Sbjct: 6   SLFALILIEIL-LCCSFCLCREVQIFPRRERKTLSRKLLLIPMA-SLSGSSR-AMKEPKK 65

Query: 192 AVEQSFRKAPPTGANPIQNK 207
           AVE S R+ PP+ +NPIQN+
Sbjct: 66  AVESSMRRKPPSTSNPIQNR 82

[Close]
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match: A0A6A2YML8 (Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111377pilonHSYRG00015 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-04
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 128 LSGFAIFLLILIQIFTISSSFCFGD-----EEMERKSLERRRMVDSMADSVSGNGRSAIE 187
           +S   +  LIL+ I    SS C GD      E +R ++ R+ +  S+A   +GNG +A++
Sbjct: 3   ISSVNLTALILLHILISCSSSCLGDVVVSSGETDRIAISRKVLSSSVASFSAGNG-AAVK 62

Query: 188 EPKKAVEQSFRKAPPTGANPIQN 206
           EPKKAV  S RKAPP+  NP QN
Sbjct: 63  EPKKAVLPSLRKAPPSVPNPTQN 84

[Close]
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match: U5FK75 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G047700 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-04
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 132 AIFLLILIQIFTISSSFCFGDEE-----MERKSLERRRMVDSMADSVSGNGRSAIEEPKK 191
           A+F+LIL+ I   SSS C   EE      +R ++ R+ +   M    +  G   ++E KK
Sbjct: 10  ALFVLILVHILA-SSSLCLCHEESSLIPSKRSTISRKLLATPMKSRENKLGDGTMKEAKK 69

Query: 192 AVEQSFRKAPPTGANPIQN 206
           AVEQS RKAPP+ +NPIQN
Sbjct: 70  AVEQSLRKAPPSVSNPIQN 87

The following BLAST results are available for this feature:
BLAST of Clc09G20990 vs. NCBI nr
Match NameE-valueIdentityDescription
ONH95523.11.0e-0446.99hypothetical protein PRUPE_7G075600 [Prunus persica] >CAB4286843.1 unnamed prote... [more]
KAB2608119.12.9e-0447.50hypothetical protein D8674_011287 [Pyrus ussuriensis x Pyrus communis][more]
BLAST of Clc09G20990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
M5W7924.8e-0546.99Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G075600 PE=4 SV=1[more]
A0A6J5VFA84.8e-0546.99Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44578 PE=4 S... [more]
A0A5N5FYA01.4e-0447.50Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A6A2YML89.1e-0442.17Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1 OS=Hibisc... [more]
U5FK759.1e-0443.04Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G047700 PE=4 ... [more]
BLAST of Clc09G20990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G20990.2Clc09G20990.2mRNA