Clc09G20880 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G20880
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L12, chloroplastic-like
Location	ClcChr09: 34412970 .. 34413868 (-)
RNA-Seq Expression	Clc09G20880
Synteny	Clc09G20880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTATCATCCTCTTCTTTCTCTGCTGATCCTTCTTTCTTTCTATTCTATACTCTCACCAGAAGAAGAAAATGGCTTCCACAATCTCCACTCTCACCCTCCATTCCCCATCTCATCTTTCTTATCCCCATTCCTCTTTCTCCACTCAGTCCTTCAAATCCACAACCCTCCATTTCCCATCCTACCTTTCCTCAACCTCCATCTCCCATCGCGCCACCCACCTCCGCCCCATTGCCGCCGTCTCAGCCCCTGAGAAAATCGAAAAACTTGGCTCCGACATTTCCAACCTCACCCTCGAAGAGGCCCGCCTGCTGGTCGACTTCCTCCAAGACAAGCTGGGTGTCTCTGCCGCCGCCTTCGCTCCGGCTGCTGTTGTGGCAGCACCCGGAGGCGCCGCTGGTGGTGATGCGGCAGCCGCGGTGGTGGAGGAGAAGACGGAATTCGATGTGGTGATTGAGGACGTGCCTAGCAATGCTAGAATTGCAGTGATTAAGGCAGTGAGAGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTGATTGAAGGTCTGCCTAAGAAGTTCAAGGAAGGAGTTTCGAAAGAAGAAGCTGAGGATGCCAAGAAACAGCTTGAAGAAGCTGGAGCTAAAGTCGCCATTGTTTAATGGCAGAGGGGAAAACAAGAGTTTATTTGTTTTAGATAAACTTACTCAGTCTTGCGGATTTTTCCATATATTTTTTTTGTTCTTGATGTGAACTGTGAAGTTGTTATGACATATGCCCACTTAGAATCTTGCTTGTTTTGTGTTGCTATTCGCCAAATTGTTGCCTTGTTCTTCTTCCTTCATTGGTCTGTAAAATTACATAAACTTGTATTTCAACGTCTATTTCATACAAAATACCTGTTTTCTACAGAG

mRNA sequence

ATCCTATCATCCTCTTCTTTCTCTGCTGATCCTTCTTTCTTTCTATTCTATACTCTCACCAGAAGAAGAAAATGGCTTCCACAATCTCCACTCTCACCCTCCATTCCCCATCTCATCTTTCTTATCCCCATTCCTCTTTCTCCACTCAGTCCTTCAAATCCACAACCCTCCATTTCCCATCCTACCTTTCCTCAACCTCCATCTCCCATCGCGCCACCCACCTCCGCCCCATTGCCGCCGTCTCAGCCCCTGAGAAAATCGAAAAACTTGGCTCCGACATTTCCAACCTCACCCTCGAAGAGGCCCGCCTGCTGGTCGACTTCCTCCAAGACAAGCTGGGTGTCTCTGCCGCCGCCTTCGCTCCGGCTGCTGTTGTGGCAGCACCCGGAGGCGCCGCTGGTGGTGATGCGGCAGCCGCGGTGGTGGAGGAGAAGACGGAATTCGATGTGGTGATTGAGGACGTGCCTAGCAATGCTAGAATTGCAGTGATTAAGGCAGTGAGAGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTGATTGAAGGTCTGCCTAAGAAGTTCAAGGAAGGAGTTTCGAAAGAAGAAGCTGAGGATGCCAAGAAACAGCTTGAAGAAGCTGGAGCTAAAGTCGCCATTGTTTAATGGCAGAGGGGAAAACAAGAGTTTATTTGTTTTAGATAAACTTACTCAGTCTTGCGGATTTTTCCATATATTTTTTTTGTTCTTGATGTGAACTGTGAAGTTGTTATGACATATGCCCACTTAGAATCTTGCTTGTTTTGTGTTGCTATTCGCCAAATTGTTGCCTTGTTCTTCTTCCTTCATTGGTCTGTAAAATTACATAAACTTGTATTTCAACGTCTATTTCATACAAAATACCTGTTTTCTACAGAG

Coding sequence (CDS)

ATGGCTTCCACAATCTCCACTCTCACCCTCCATTCCCCATCTCATCTTTCTTATCCCCATTCCTCTTTCTCCACTCAGTCCTTCAAATCCACAACCCTCCATTTCCCATCCTACCTTTCCTCAACCTCCATCTCCCATCGCGCCACCCACCTCCGCCCCATTGCCGCCGTCTCAGCCCCTGAGAAAATCGAAAAACTTGGCTCCGACATTTCCAACCTCACCCTCGAAGAGGCCCGCCTGCTGGTCGACTTCCTCCAAGACAAGCTGGGTGTCTCTGCCGCCGCCTTCGCTCCGGCTGCTGTTGTGGCAGCACCCGGAGGCGCCGCTGGTGGTGATGCGGCAGCCGCGGTGGTGGAGGAGAAGACGGAATTCGATGTGGTGATTGAGGACGTGCCTAGCAATGCTAGAATTGCAGTGATTAAGGCAGTGAGAGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTGATTGAAGGTCTGCCTAAGAAGTTCAAGGAAGGAGTTTCGAAAGAAGAAGCTGAGGATGCCAAGAAACAGCTTGAAGAAGCTGGAGCTAAAGTCGCCATTGTTTAA

Protein sequence

MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKVAIV

Homology

[Close]

BLAST of Clc09G20880 vs. NCBI nr
Match: XP_038890576.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 308.1 bits (788), Expect = 5.1e-80
Identity = 174/191 (91.10%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSAP 60
           MAST+S LTLHSPSHLSY HSS ST SFKSTTL FPS+LSS ++SHRATHLRPIAA+SAP
Sbjct: 1   MASTLSILTLHSPSHLSYSHSSLSTHSFKSTTLQFPSHLSSIAVSHRATHLRPIAAISAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVEE 120
           EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAA+FAPAAVVAAPGG AGG+AAA  VEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAASFAPAAVVAAPGGTAGGEAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKVAIV 192
           LEEAGAK+AIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. NCBI nr
Match: XP_023536532.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 4.7e-73
Identity = 170/192 (88.54%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MASTISTL-TLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSA 60
           MAST+STL TL SP+HLSY HSSFSTQS  STTL FP   SST+ SHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GAA GDAAA  VE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKVAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. NCBI nr
Match: XP_022960313.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1 50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.0 bits (728), Expect = 4.7e-73
Identity = 170/192 (88.54%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MASTISTL-TLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSA 60
           MAST+STL TL SP HLSY HSSFSTQS  STTL FP   SST+ SHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GAA GDAAA  VE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKVAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. NCBI nr
Match: KAG7033112.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.3 bits (726), Expect = 8.0e-73
Identity = 170/192 (88.54%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MASTISTL-TLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSA 60
           MAST+STL TL SP HLSY HSSFSTQS  STTL FP   SST+ SHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GAA GDAAA  VE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKVAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. NCBI nr
Match: XP_022989905.1 (50S ribosomal protein L12, chloroplastic [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 169/192 (88.02%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 1   MASTISTLT-LHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSA 60
           MAST+STLT L SP HLSY HSSFSTQS  STTL FP   SST+ SHRAT LRPIAAVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPA VVAAP GAA GDAAA  VE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAP-GAAAGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKVAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-54
Identity = 135/190 (71.05%), Postives = 155/190 (81.58%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSAP 60
           MAST+ST+TL SPS  S   S+ ++  F   TL FP        + RAT LRP+AAV AP
Sbjct: 1   MASTLSTITLRSPSP-STATSTHASIPFPKKTLEFPIRTPKLQ-NRRATFLRPLAAVEAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVEE 120
           EK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPG AA    A AVVEE
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQ
Sbjct: 121 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQ 180

Query: 181 LEEAGAKVAI 191
           LEEAGAKV+I
Sbjct: 181 LEEAGAKVSI 185

[Close]

BLAST of Clc09G20880 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.6e-54
Identity = 134/191 (70.16%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISH-RATHLRPIAAVSA 60
           MAST+ST+TL SPS  S   S+ ++  F    L FP  + +  + H RAT LRP+AAV A
Sbjct: 1   MASTLSTITLRSPSP-STASSTHASIPFPKKALEFP--IRTPKLHHRRATFLRPLAAVEA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAV AAPG AA    A AVVE
Sbjct: 61  PEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKK
Sbjct: 121 EKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKK 180

Query: 181 QLEEAGAKVAI 191
           QLEEAGAKV+I
Sbjct: 181 QLEEAGAKVSI 185

[Close]

BLAST of Clc09G20880 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 132/194 (68.04%), Postives = 152/194 (78.35%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSI---SHRATHLRPIAAV 60
           MA+T +  TL+ PS  S+P+S  ST       L FP   ++  I   S R T LRPIAAV
Sbjct: 1   MAATTTMATLNLPSLTSHPNS--STFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  SAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAV 120
            APEKIE+LG+ +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPG  A    AA  
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPA 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDA 180
           VEEKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEGVSK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKVAIV 192
           KKQLE+AGAKV+IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]

BLAST of Clc09G20880 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 5.2e-51
Identity = 135/193 (69.95%), Postives = 158/193 (81.87%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSF--KSTTLHFPSYLSSTSISHRATHLRPIAAVS 60
           MAST  TL++ +    S P +S ST  F  K T + FP  LSS+S SHRA +LRPI+AV 
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 60

Query: 61  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAAGGDAAAAV 120
           APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AAAV
Sbjct: 61  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAV 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDA 180
           VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+A
Sbjct: 121 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 180

Query: 181 KKQLEEAGAKVAI 191
           KK LEEAGAKV+I
Sbjct: 181 KKTLEEAGAKVSI 186

[Close]

BLAST of Clc09G20880 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.9e-51
Identity = 133/195 (68.21%), Postives = 159/195 (81.54%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPH-SSFSTQSFKSTTLHFPSYL---SSTSISHRATHLRPIAA 60
           MAST  ++     S  SYP  +S +    ++TT+ FPS     SS++++HRATHLRPIAA
Sbjct: 1   MASTTLSIATTIRSS-SYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAA 60

Query: 61  VSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAAGGDAAA 120
           V APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AA
Sbjct: 61  VEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AA 120

Query: 121 AVVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAE 180
           AVVEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE
Sbjct: 121 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 180

Query: 181 DAKKQLEEAGAKVAI 191
           +AKK LEEAGAKV+I
Sbjct: 181 EAKKTLEEAGAKVSI 190

[Close]

BLAST of Clc09G20880 vs. ExPASy TrEMBL
Match: A0A6J1H8H9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461079 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.3e-73
Identity = 170/192 (88.54%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MASTISTL-TLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSA 60
           MAST+STL TL SP HLSY HSSFSTQS  STTL FP   SST+ SHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAP GAA GDAAA  VE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAP-GAAAGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKVAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. ExPASy TrEMBL
Match: A0A6J1JNN0 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486956 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.6e-72
Identity = 169/192 (88.02%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 1   MASTISTLT-LHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSA 60
           MAST+STLT L SP HLSY HSSFSTQS  STTL FP   SST+ SHRAT LRPIAAVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPA VVAAP GAA GDAAA  VE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAP-GAAAGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKVAIV 192
           QLEEAGAK+AIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Clc09G20880 vs. ExPASy TrEMBL
Match: A0A5A7T262 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001220 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.2e-71
Identity = 164/191 (85.86%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSAP 60
           MAS++STLTL++P  LSY HS FS  SF+STTLHFP          RAT LRPIAAVSAP
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFP--------YRRATLLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVEE 120
           EKIEKLGSDIS+LTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGA GGDAAA  VEE
Sbjct: 61  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKVAIV 192
           LEEAGAK+AIV
Sbjct: 181 LEEAGAKIAIV 183

[Close]

BLAST of Clc09G20880 vs. ExPASy TrEMBL
Match: A0A1S3C863 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103498080 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 163/191 (85.34%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSAP 60
           MAS++STLTL++P  LSY HS FS  SF+STTLHFP          RAT LRPIAAVSAP
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFP--------YRRATLLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVEE 120
           EKIEKLGSDIS+LTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGA GGDAAA  VEE
Sbjct: 61  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKVAIV 192
           LE+AGAK+AIV
Sbjct: 181 LEDAGAKIAIV 183

[Close]

BLAST of Clc09G20880 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.0e-70
Identity = 162/191 (84.82%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFPSYLSSTSISHRATHLRPIAAVSAP 60
           MAST+STLTL +PS LS+ HSSFST S K TTL FP        SHRAT LRPIAAVSAP
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFP--------SHRATRLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVVEE 120
           EKIEKLGSDISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGG AGGD AA  VEE
Sbjct: 61  EKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKVAIV 192
           LEEAGAK+ IV
Sbjct: 181 LEEAGAKITIV 183

[Close]

BLAST of Clc09G20880 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-52
Identity = 135/193 (69.95%), Postives = 158/193 (81.87%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPHSSFSTQSF--KSTTLHFPSYLSSTSISHRATHLRPIAAVS 60
           MAST  TL++ +    S P +S ST  F  K T + FP  LSS+S SHRA +LRPI+AV 
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 60

Query: 61  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAAGGDAAAAV 120
           APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AAAV
Sbjct: 61  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAV 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDA 180
           VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+A
Sbjct: 121 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 180

Query: 181 KKQLEEAGAKVAI 191
           KK LEEAGAKV+I
Sbjct: 181 KKTLEEAGAKVSI 186

[Close]

BLAST of Clc09G20880 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 201.4 bits (511), Expect = 6.3e-52
Identity = 133/195 (68.21%), Postives = 159/195 (81.54%), Query Frame = 0


Query: 1   MASTISTLTLHSPSHLSYPH-SSFSTQSFKSTTLHFPSYL---SSTSISHRATHLRPIAA 60
           MAST  ++     S  SYP  +S +    ++TT+ FPS     SS++++HRATHLRPIAA
Sbjct: 1   MASTTLSIATTIRSS-SYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAA 60

Query: 61  VSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAAGGDAAA 120
           V APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AA
Sbjct: 61  VEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AA 120

Query: 121 AVVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAE 180
           AVVEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE
Sbjct: 121 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 180

Query: 181 DAKKQLEEAGAKVAI 191
           +AKK LEEAGAKV+I
Sbjct: 181 EAKKTLEEAGAKVSI 190

[Close]

BLAST of Clc09G20880 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 106/193 (54.92%), Postives = 135/193 (69.95%), Query Frame = 0


Query: 2   ASTISTLTLHSPSHLSYPHSSFSTQSFKSTTLHFP---SYLSSTSISHRATHLRPIAAVS 61
           A+T+S  T    S  S   +S      +  ++ FP      SS+++SHRA +L PI+AV 
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAAGGDAAAAVV 121
            P+KI+K+GS+IS+LTLEE+R+LVD++QDK GVS    APAA    P    GG  A A V
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATASV 122

Query: 122 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAK 181
           E +T FDVVI DVP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEGV+K+EAE+ K
Sbjct: 123 ERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDK 182

Query: 182 KQLEEAGAKVAIV 192
            QLEEAGAKV+IV
Sbjct: 183 TQLEEAGAKVSIV 193

[Close]

BLAST of Clc09G20880 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-15
Identity = 66/169 (39.05%), Postives = 95/169 (56.21%), Query Frame = 0


Query: 34  HFPSYLSSTSISHRATHLRPI--AAVSAP----EKIEKLGSDISNLTLEEARLLVDFLQD 93
           HF   L ST     +  L  I   + S+P    E + K+ +++SNLTL E   L + L+ 
Sbjct: 10  HFSRVLKSTETRSSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQ 69

Query: 94  KLGVS----AAAFAPAAVVAAPGG--AAGGDAAAAVVEEKTEFDVVIEDVPSNARIAVIK 153
           KL +S     AA  P   +   G   +AGG+      E KT FDV+++   + ++I VIK
Sbjct: 70  KLNISELPVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIK 129

Query: 154 AVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKVAI 191
            VR +T+L LKEAK+L+E  P   K+GVSKEEAE   ++L+  GAKVA+
Sbjct: 130 EVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of Clc09G20880 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 46  HRATHL----RPIAAVSAPE----KIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFA 105
           HR T L    R + AV++PE    K+E++  D+  L   E          K+G++    A
Sbjct: 17  HRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSA 76

Query: 106 PAAVVAAPGGAAGGDAAAAV---VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEA 165
               VA  G    GDA+A+      EKT FDV +E   + ++I VIK +RA T L LKEA
Sbjct: 77  ----VAVTGSV--GDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEA 136

Query: 166 KELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKVAI 191
           K L+E  P   K G++KEEAE   ++L+  GA VA+
Sbjct: 137 KALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of Clc09G20880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890576.1	5.1e-80	91.10	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
XP_023536532.1	4.7e-73	88.54	50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960313.1	4.7e-73	88.54	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1...	[more]
KAG7033112.1	8.0e-73	88.54	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
XP_022989905.1	1.1e-71	88.02	50S ribosomal protein L12, chloroplastic [Cucurbita maxima]	[more]

BLAST of Clc09G20880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36688	3.0e-54	71.05	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	8.6e-54	70.16	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P02398	1.4e-51	68.04	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36212	5.2e-51	69.95	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	8.9e-51	68.21	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Clc09G20880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8H9	2.3e-73	88.54	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JNN0	5.6e-72	88.02	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7T262	6.2e-71	85.86	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C863	1.4e-70	85.34	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1JTI3	4.0e-70	84.82	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Clc09G20880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	3.7e-52	69.95	ribosomal protein L12-C	[more]
AT3G27830.1	6.3e-52	68.21	ribosomal protein L12-A	[more]
AT3G27840.1	1.6e-39	54.92	ribosomal protein L12-B	[more]
AT4G36420.1	1.6e-15	39.05	Ribosomal protein L12 family protein	[more]
AT4G37660.1	1.2e-10	37.82	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 62..119 e-value: 3.1E-13 score: 51.5
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 62..126
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 62..190 e-value: 1.8E-32 score: 110.4
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..190
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 58..191 score: 22.749073
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 61..190 e-value: 1.24602E-43 score: 139.983
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 124..190 e-value: 1.6E-24 score: 86.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 120..190 e-value: 5.9E-26 score: 92.4
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 119..190
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 62..110 e-value: 2.9E-13 score: 49.3
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G20880.1	Clc09G20880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome