Clc09G20640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G20640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NHL domain protein
Location	ClcChr09: 34164581 .. 34165036 (-)
RNA-Seq Expression	Clc09G20640
Synteny	Clc09G20640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTGGCGCAATCTCCCGACCTCTCTTCCGACGAAAATGGCTTCCATGGCGATGACCTTCACGACGCCGCTTTCGTTAGCCGCGGCTGTTGCTTCTGGATCCCTTGTCTGAGATCCAATCCCTCGCAGTCTTGGTGGGAGCGGATTAGGGCAGCCGATAACGACGATGAATGGTGGCTTAGAGGCTGGAAGAGGTTTCGCGAGTGGTCGGAAATCGTCGCTGGCCCTAAATGGAAGACTTTCATTCGTCAATTCAATAAGAATCGCAATCGTCAATCCACTTTCCGTTACGATCCTCTAAGTTACTCTCTTAATTTCGACGAAGGTCCAGCCCACGACGATCCTTTCAGCGACGATTTTGTACGCCGTGATTTCTCCACTCGATTCGCCGCCCTTCCGTCCTCCGCCAAATCGTCTATGGACCTCGATAAGGACGATCCGTCCTTCATTTGA

mRNA sequence

ATGTCTCTGGCGCAATCTCCCGACCTCTCTTCCGACGAAAATGGCTTCCATGGCGATGACCTTCACGACGCCGCTTTCGTTAGCCGCGGCTGTTGCTTCTGGATCCCTTGTCTGAGATCCAATCCCTCGCAGTCTTGGTGGGAGCGGATTAGGGCAGCCGATAACGACGATGAATGGTGGCTTAGAGGCTGGAAGAGGTTTCGCGAGTGGTCGGAAATCGTCGCTGGCCCTAAATGGAAGACTTTCATTCGTCAATTCAATAAGAATCGCAATCGTCAATCCACTTTCCGTTACGATCCTCTAAGTTACTCTCTTAATTTCGACGAAGGTCCAGCCCACGACGATCCTTTCAGCGACGATTTTGTACGCCGTGATTTCTCCACTCGATTCGCCGCCCTTCCGTCCTCCGCCAAATCGTCTATGGACCTCGATAAGGACGATCCGTCCTTCATTTGA

Coding sequence (CDS)

ATGTCTCTGGCGCAATCTCCCGACCTCTCTTCCGACGAAAATGGCTTCCATGGCGATGACCTTCACGACGCCGCTTTCGTTAGCCGCGGCTGTTGCTTCTGGATCCCTTGTCTGAGATCCAATCCCTCGCAGTCTTGGTGGGAGCGGATTAGGGCAGCCGATAACGACGATGAATGGTGGCTTAGAGGCTGGAAGAGGTTTCGCGAGTGGTCGGAAATCGTCGCTGGCCCTAAATGGAAGACTTTCATTCGTCAATTCAATAAGAATCGCAATCGTCAATCCACTTTCCGTTACGATCCTCTAAGTTACTCTCTTAATTTCGACGAAGGTCCAGCCCACGACGATCCTTTCAGCGACGATTTTGTACGCCGTGATTTCTCCACTCGATTCGCCGCCCTTCCGTCCTCCGCCAAATCGTCTATGGACCTCGATAAGGACGATCCGTCCTTCATTTGA

Protein sequence

MSLAQSPDLSSDENGFHGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEWWLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDDFVRRDFSTRFAALPSSAKSSMDLDKDDPSFI

Homology

[Close]

BLAST of Clc09G20640 vs. NCBI nr
Match: XP_038889212.1 (uncharacterized protein LOC120079097 [Benincasa hispida])

HSP 1 Score: 311.6 bits (797), Expect = 3.7e-81
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEWW 60
           MSLAQSPDLSSDEN FHGDDLHDAAFVSRGCC W+PCLRSNPSQSWWERIRAADNDDEWW
Sbjct: 1   MSLAQSPDLSSDENAFHGDDLHDAAFVSRGCCLWLPCLRSNPSQSWWERIRAADNDDEWW 60

Query: 61  LRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD 120
           LRGWKRFREWSEI+AGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD
Sbjct: 61  LRGWKRFREWSEIIAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD 120

Query: 121 FVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
            VRRDFSTRFAA+P+SAKSSMDL KD P FI
Sbjct: 121 LVRRDFSTRFAAIPASAKSSMDLGKDGPPFI 151

[Close]

BLAST of Clc09G20640 vs. NCBI nr
Match: XP_031741765.1 (uncharacterized protein LOC116403956 [Cucumis sativus] >KGN52385.1 hypothetical protein Csa_008790 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGF-HGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEW 60
           MSLA SPDLSSDENGF H DDLHDA F +RGCC WIPCLRSN SQSWWERIRAADNDDEW
Sbjct: 1   MSLAHSPDLSSDENGFLHNDDLHDAVFATRGCCLWIPCLRSNSSQSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSD 120
           WL+GWKRFREWSEIVAGPKWKTFIRQF+KNRNRQSTFRYDPLSYSLNFDEGPAHDDPF+D
Sbjct: 61  WLKGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFTD 120

Query: 121 DFVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           DFVRRDFSTRFAA+P+SAKSSMDL KD PSFI
Sbjct: 121 DFVRRDFSTRFAAIPASAKSSMDLGKDSPSFI 152

[Close]

BLAST of Clc09G20640 vs. NCBI nr
Match: XP_016902318.1 (PREDICTED: uncharacterized protein LOC107991628 [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 134/151 (88.74%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEWW 60
           MSLAQSPD SSDENGFH +DLHDA F + GCCFWIPCLRSN SQSWWERIRAADNDDEWW
Sbjct: 1   MSLAQSPDFSSDENGFHSNDLHDAVFATHGCCFWIPCLRSNSSQSWWERIRAADNDDEWW 60

Query: 61  LRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD 120
           LRGWKRFREWSEIVAGPKWKTFIRQF+KNRNRQSTFRYDPLSYSLNFDEGPAH+D F+DD
Sbjct: 61  LRGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHEDSFTDD 120

Query: 121 FVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           FVRRDFSTRFAA+P+SAKSSMDL KD PS I
Sbjct: 121 FVRRDFSTRFAAIPASAKSSMDLVKDSPSLI 151

[Close]

BLAST of Clc09G20640 vs. NCBI nr
Match: KAA0037502.1 (putative NHL domain-containing protein [Cucumis melo var. makuwa] >TYK01977.1 putative NHL domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 6.7e-75
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEWW 60
           MSLAQSPD SSDENGFH +DLHDA F + GCCFWIPCLRSN SQSWWERIRAADNDDEWW
Sbjct: 1   MSLAQSPDFSSDENGFHSNDLHDAVFATHGCCFWIPCLRSNSSQSWWERIRAADNDDEWW 60

Query: 61  LRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD 120
           LRGWKRFREWSEIVAGPKWKTFIRQF+KNRNRQSTFRYDPLSYSLNFDEGPAH+D F+DD
Sbjct: 61  LRGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHEDSFTDD 120

Query: 121 FVRRDFSTRFAALPSSAKSSMDLDKD 147
           FVRRDFSTRFAA+P+SAKSSMDL KD
Sbjct: 121 FVRRDFSTRFAAIPASAKSSMDLVKD 146

[Close]

BLAST of Clc09G20640 vs. NCBI nr
Match: KAG6602448.1 (hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033131.1 hypothetical protein SDJN02_07184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 129/152 (84.87%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDD-LHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEW 60
           MS++QSPDLSSD NGFH DD LH+AAF SRGCCFW+PCLRSNPS+SWWERIRAADNDDEW
Sbjct: 1   MSVSQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSD 120
           WLRGWKRFR+WSEIVAGPKWKTFIRQF+KNR+RQST+RYDPLSY+LNFDEGPA DDPFS+
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120

Query: 121 DFVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           DF+RRDFS RFA++P+SAKSSMDL KD PSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of Clc09G20640 vs. ExPASy TrEMBL
Match: A0A0A0KRY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.2e-78
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGF-HGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEW 60
           MSLA SPDLSSDENGF H DDLHDA F +RGCC WIPCLRSN SQSWWERIRAADNDDEW
Sbjct: 1   MSLAHSPDLSSDENGFLHNDDLHDAVFATRGCCLWIPCLRSNSSQSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSD 120
           WL+GWKRFREWSEIVAGPKWKTFIRQF+KNRNRQSTFRYDPLSYSLNFDEGPAHDDPF+D
Sbjct: 61  WLKGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFTD 120

Query: 121 DFVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           DFVRRDFSTRFAA+P+SAKSSMDL KD PSFI
Sbjct: 121 DFVRRDFSTRFAAIPASAKSSMDLGKDSPSFI 152

[Close]

BLAST of Clc09G20640 vs. ExPASy TrEMBL
Match: A0A1S4E267 (uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.7e-77
Identity = 134/151 (88.74%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEWW 60
           MSLAQSPD SSDENGFH +DLHDA F + GCCFWIPCLRSN SQSWWERIRAADNDDEWW
Sbjct: 1   MSLAQSPDFSSDENGFHSNDLHDAVFATHGCCFWIPCLRSNSSQSWWERIRAADNDDEWW 60

Query: 61  LRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD 120
           LRGWKRFREWSEIVAGPKWKTFIRQF+KNRNRQSTFRYDPLSYSLNFDEGPAH+D F+DD
Sbjct: 61  LRGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHEDSFTDD 120

Query: 121 FVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           FVRRDFSTRFAA+P+SAKSSMDL KD PS I
Sbjct: 121 FVRRDFSTRFAAIPASAKSSMDLVKDSPSLI 151

[Close]

BLAST of Clc09G20640 vs. ExPASy TrEMBL
Match: A0A5A7T228 (Putative NHL domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00830 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.3e-75
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDDLHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEWW 60
           MSLAQSPD SSDENGFH +DLHDA F + GCCFWIPCLRSN SQSWWERIRAADNDDEWW
Sbjct: 1   MSLAQSPDFSSDENGFHSNDLHDAVFATHGCCFWIPCLRSNSSQSWWERIRAADNDDEWW 60

Query: 61  LRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSDD 120
           LRGWKRFREWSEIVAGPKWKTFIRQF+KNRNRQSTFRYDPLSYSLNFDEGPAH+D F+DD
Sbjct: 61  LRGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHEDSFTDD 120

Query: 121 FVRRDFSTRFAALPSSAKSSMDLDKD 147
           FVRRDFSTRFAA+P+SAKSSMDL KD
Sbjct: 121 FVRRDFSTRFAAIPASAKSSMDLVKD 146

[Close]

BLAST of Clc09G20640 vs. ExPASy TrEMBL
Match: A0A6J1HFG4 (uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC111462557 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 129/152 (84.87%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDD-LHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEW 60
           MS+ QSPDLSSD NGFH DD LH+AAF SRGCCFW+PCLRSNPS+SWWERIRAADNDDEW
Sbjct: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSD 120
           WLRGWKRFR+WSEIVAGPKWKTFIRQF+KNR+RQST+RYDPLSY+LNFDEGPA DDPFS+
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120

Query: 121 DFVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           DF+RRDFS RFA++P+SAKSSMDL KD PSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of Clc09G20640 vs. ExPASy TrEMBL
Match: A0A6J1JTQ3 (uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 126/152 (82.89%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MSLAQSPDLSSDENGFHGDD-LHDAAFVSRGCCFWIPCLRSNPSQSWWERIRAADNDDEW 60
           MS++QSPDLSSD NGFH DD LH+AAF SRGCCFW+PCLRSNPS++WWERIRAADNDDEW
Sbjct: 1   MSVSQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKTWWERIRAADNDDEW 60

Query: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSD 120
           WLRGWKRFR+WSEIVAGPKWKTFIRQF+KNR+RQST+RYDPLSY+LNFD+GPA DDPF +
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDDGPALDDPFRE 120

Query: 121 DFVRRDFSTRFAALPSSAKSSMDLDKDDPSFI 152
           DF+RRDFS RFA++P+SAKSSMDL KD PSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of Clc09G20640 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 144.4 bits (363), Expect = 7.3e-35
Identity = 76/151 (50.33%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 19  DDLHDAAFVSRGCCFWIPCLRSN----PSQS-WWERIRAADN---DDEWWLRGWKRFREW 78
           D++H+A F  RGCCF +PCL S+    P+ S WW+RIR  D    D+ WW+ GW + REW
Sbjct: 598 DEMHEAMFAKRGCCFILPCLGSSQPSGPNGSVWWQRIRTVDKLEPDERWWVSGWMKMREW 657

Query: 79  SEIVAGPKWKTFIRQFNK------------NRNRQSTFRYDPLSYSLNFDEGPAHDDPFS 138
           SEIVAGPKWKTFIR+F +            NR    +FRYD  SYSLNFD+G      F 
Sbjct: 658 SEIVAGPKWKTFIRRFGRNHCCNGGIDGGCNRPEHVSFRYDSWSYSLNFDDG-KQTGHFE 717

Query: 139 DDFVRRDFSTRFAA--LPSSAKSSMDLDKDD 148
           D+F  RD+S RFAA  LP S K S+D D D+
Sbjct: 718 DEFPYRDYSMRFAAPSLPVSTKCSIDFDNDN 747

[Close]

BLAST of Clc09G20640 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-34
Identity = 75/163 (46.01%), Postives = 94/163 (57.67%), Query Frame = 0


Query: 19  DDLHDAAFVSRGCCFWIPCLRSNPSQS-----WWERIRAADN---DDEWWLRGWKRFREW 78
           DD+H+A F  RGCCF +PCL S+   +     WW+RI   D    D+ WW+RGW+R REW
Sbjct: 15  DDMHEALFAKRGCCFLMPCLASSQPSTRGGSVWWQRITTVDKLEPDERWWIRGWRRMREW 74

Query: 79  SEIVAGPKWKTFIRQFNKNR----------------------NR---QSTFRYDPLSYSL 138
           SE+VAGP+WKT+IR+F ++                       NR   Q  FRYD LSYSL
Sbjct: 75  SELVAGPRWKTYIRRFGRSNCCGGGGGRVGNSSGGCGGGAMPNRSSDQGKFRYDQLSYSL 134

Query: 139 NFDEGPAHDDPFSDDFVRRDFSTRFAA--LPSSAKSSMDLDKD 147
           NFD+G      F D+F  RD+S RFAA  LP S K S+D D D
Sbjct: 135 NFDDG-NQTGHFDDEFPYRDYSMRFAAPSLPVSTKCSIDFDSD 176

[Close]

BLAST of Clc09G20640 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). )

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-21
Identity = 60/136 (44.12%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 23  DAAFVSRGCCFWIPCLRSNPSQ-----SWWERIRAAD---------NDDEWWLRGWKRFR 82
           D  +  R CCF  P  R + S      S W RIR  D         ++  WW+R   + R
Sbjct: 13  DTRYDQRCCCF--PSFRRSRSSTAVGYSSWGRIRTVDDSNHSGDHGDEPRWWIRASLKIR 72

Query: 83  EWSEIVAGPKWKTFIRQFNKNRNR------QSTFRYDPLSYSLNFDEGPAHDDPFSDDFV 135
           EWSEIVAGP+WKTFIR+FN++  R         F+YDPLSYSLNFD     DD   D++V
Sbjct: 73  EWSEIVAGPRWKTFIRRFNRDPRRGRDWDASEKFQYDPLSYSLNFD-----DDDEEDEYV 132

[Close]

BLAST of Clc09G20640 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 37  CLRSNPSQSWWERI-RAADNDDEWWLRGWKRFREWSEIVAGPKWKTFIRQFNKNRNR--- 96
           C  +    SWW+RI R    +  WW+R + + REWSEIVAGP+WKTFIR+FN++  R   
Sbjct: 15  CCSTTVKSSWWQRIHRNNHQEPRWWVRAFLKIREWSEIVAGPRWKTFIRRFNRDPRRGQD 74

Query: 97  ---QSTFRYDPLSYSLNFDEGPAHDDPFSDDFVRRDFSTRFAALP-SSAKSSMDLDKD 147
                 FRYDP+SY+L+F++    DD  +     R FS R+A++P +S KS   +  D
Sbjct: 75  WDDSDKFRYDPVSYTLSFEDEDKDDDDEAGVGGVRSFSMRYASVPVASGKSPAVISVD 132

[Close]

BLAST of Clc09G20640 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-08
Identity = 32/83 (38.55%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 43  SQSWWERIRAADNDDEWWLRGWKRFREWSEIVAGPKWKTFIRQFNKNR---NRQSTFRYD 102
           S+  W      +    W     K  +E SE +AGPKWK FIR F+  R    R   F YD
Sbjct: 42  SRGGWSGCLQEERRGNWGSEKLKGLKEISEKIAGPKWKNFIRSFSSGRKKMRRDVDFTYD 101

Query: 103 PLSYSLNFDEGPAHDDPFSDDFV 123
             +YSLNFD+G    D   + FV
Sbjct: 102 LKNYSLNFDDGGDGKDSSPERFV 124

The following BLAST results are available for this feature:

BLAST of Clc09G20640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889212.1	3.7e-81	93.38	uncharacterized protein LOC120079097 [Benincasa hispida]	[more]
XP_031741765.1	1.9e-77	90.13	uncharacterized protein LOC116403956 [Cucumis sativus] >KGN52385.1 hypothetical ...	[more]
XP_016902318.1	1.6e-76	88.74	PREDICTED: uncharacterized protein LOC107991628 [Cucumis melo]	[more]
KAA0037502.1	6.7e-75	89.73	putative NHL domain-containing protein [Cucumis melo var. makuwa] >TYK01977.1 pu...	[more]
KAG6602448.1	2.2e-73	84.87	hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc09G20640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G20640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRY7	9.2e-78	90.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1	[more]
A0A1S4E267	7.7e-77	88.74	uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=...	[more]
A0A5A7T228	3.3e-75	89.73	Putative NHL domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1HFG4	1.8e-73	84.87	uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC1114625...	[more]
A0A6J1JTQ3	2.0e-72	82.89	uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422...	[more]

BLAST of Clc09G20640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14890.1	7.3e-35	50.33	NHL domain-containing protein	[more]
AT3G01430.1	4.7e-34	46.01	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:...	[more]
AT5G62865.1	1.6e-21	44.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G48020.1	1.7e-20	42.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G25240.1	3.4e-08	38.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47076:SF1	NHL DOMAIN PROTEIN	coord: 11..150
None	No IPR available	PANTHER	PTHR47076	NHL DOMAIN PROTEIN	coord: 11..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G20640.1	Clc09G20640.1	mRNA