Clc09G19930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G19930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease DdI-like
Location	ClcChr09: 33409262 .. 33412683 (-)
RNA-Seq Expression	Clc09G19930
Synteny	Clc09G19930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTCTTAAATTGAGGAGAATATTCTCCTTGGCTAGTTTCTAATAGCAAATAGATAGTGAGGACAAAATATGGTATTTTTCAATATATATCCCAATAATTTATTACTATTTTCACATCTTACAAGTCATTGTTGTAATTAAGTTAGATTGTTTCAATTTGGTTGCATTTTTTAGATAATACGTTGAATGAGGAAATCTAATCTCTAATTTTGATGATAATACAAACTATATGTCAATAGTACAAACTATATAAATAGAATACAATATGTATTTTAAATTATCTTAGAAATTAATTAAAACGCATCTTACCTTAGAAAATATGTCGCTCATGGCAAAAAAGAAAAGTTTATTGATTCTCCTAAGCATTTTTATATTAAATCTTCCAATAGGGAATGCTTTGGATGAGTTAAAAGATGATGATACAAAAACAGGGGATTCCTTGAATGAGCTAGAGGAGGACATAGCTTTCATGAGATCAAAAAATGATGATAGTTTCTATGATTTGGAGGAGCTGAAAGCAGTTCCATTTGATTATTATCAACTTGTATTGCAATGGCAACCAGCAACTTGCAGCAATGTCATTTGTCTAAGACCCTCGTCGTCGAGGTTTAGCATCAACGGTCTTTGGGCTGCTAGCTATTCTCGTCCTATTGGTCGTTGCATCGGCAGTAGATTTCTTCAACAAAACGTATGTATTTATTCACTTTTAGTCTTGCACCTTTTAAATATATTTTCACAATAGTATGGTATTATCTTTTTAATAGTTCACTTAAATTTACTTCTGAGGCGATCAGAATGGTACTCGAATCCATTTACGATCCCGAGTTTCCAGACACATCGCACTTCCACTCGGGTCGAGGCCGCCACTCGGCCCTAAGACGGATCAAAGAAGAGTGGGGGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCATCTTGGTGGTATGGGGTCATCCAATGGGGGAATAGGCGGGAAAGCGGGGCCCGGAGAACCTTATCGCTTTCCACCCGGAGCGCGTAAAAAGTAGACAGGACTTTCCACAGAGTAACTAGCCGAGAAGATTTGCGGGGTTCCCGCAGATGTATGGTAGTTTTCATGTTGACCCGAACGTGTACAGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGAACCACAATGAACGGGACGACAGAAGTTACACAAGAATATGACCAGAGATATATATTCTTCTTCGTGCATGTAGGTCTGGTTCCTGAGAAAACATATATATATTATTAGCGAGTTTCGCCGTACAATAGAGAACCCGAGACAGGCTGAAATTAATGAATTTCCACGGTTGTCGCCGGCTAGCTAATAGGGCGAGCAGCGTAATAGAGTCCCCAGGACAGACGACGTGAGTGAGAGCCCAGACCATAGCGGCTTTAGAGACTTCTCTCTCGACTTTAAACTCTAGAAAAATATATGGATGTCCCTTGTCATTTTCTAAAGTTATTAACTAGCTATTGGGCTAATATCTCCGCAAAATAAGCCCATACCTAAGATGCTTCCCAAATTAATTAAATTTGTATGGATGCATTTCATGTCATCTTCAATAAAGCTCTATCATATTCCCATTAAATTCTATGTGGTAAAAAGTGTACAATCCAATACTTCATGATCACTACCTACCGTTCTTTTTTTTTAAAGTAATTTTTTTATAAAAAAAAAAAAAAATAGTTGGTTAACTTGTTTTAGGAAAATTATCCAAATTAGTCTTGTGAAGTTTTCACATTTCAAAATTAGCAACCTTTTTTAGAATGAGTTCAATTAGTTTTTCTCATGCAATCTCGCCCAAGATTGAGATCGAGATTCTATTGAAACATTACAAACTTAAATTAACAATTCATGTGAATGGACGAAAATACCCCTATGCTGAAATGTTTCCTTCTTCCCCAACGAGACTTACATTTTTCACATCTTCTAAACTATCGAGAATTTTTACGTCTTGATCTCGGACAAGATTGCCAGAAAAAAACTAATTGAACGAGTTCTCAAAAAAGGTGCTACTTTTAAAAATGTAAAAATTTTACAAGGCTATTTGAGACAATTTTTCATTGTTTTTATATTTTGTTTGTCATCAACAATCTCAATTTTTTTGTTTTTCAAAACTAAAATTTAATATGCAAAAATATATATTTGATAGTATTTTTTCTATTTATAAAATCTTCCTAGTATTTTTTCTCTCATAACCAAAAATGAAACCATTTCTTAAAAAAAAAAAAAATGTCACACCATTTTTAAAAAATAAAAAATAAAACCCTTTTTTCCTTAAATACTCAACCATATAATATTTTAAACAATCATTTAAAAATCATAAAAGCAAATTCAATGTTTATAGTAGTATGTTTACTTAAGTTATTATTACATCTAAAGCATAATAATTTACTTTGTTTCAAATATAAGTTACGAAGCAATTATTTTAAAGTCATAGCAATTCCAAATGAATATACGGTGACATGGCGTTTTTCTAAGTTGATGATCATATGTTGTGAATTTTAAAAATATCCATTTGAGATTTCATGAACTTTGATACCTAATATTAAATAAACAAGGAGAGGAGCAGGTTATGTATATTTGAAAAATATAAAGTGAATATCTCAATCTTTCAAATATGAAACCCTTAAGTTTACAGAAATGATAAGATTGAACTTACAATGACACTCAAACATTTGGAGACAGATAACAAGCATAAGAAAAGAACTAGATGAGGATTGGCCAAGTTTGATAATAAGTTCAAACCCAGCAGTATGGAGTGAAGAGTGGAATACACACGGCACATGCTTCGAAACTCCAACTTTCAAAATCGCTGACTATTTCCGATTAGCTCTTTACCTTTTTTGGAGGAGCGACGTGGAGGAAGCCCTTAACAAATCTGGGTTGGAACCCATAAATGGAAGGCTATACCAAACGTCCGACATTGAAACAGCCCTAACCAAAAGCTTTAATGGGAAGCCTGCTCTACGCTGCACCCTCAACCTGAAGTATATTCTTCAGTCTCAATTGGCGGAAGTGGTTCTGTGCTTTGACAAATGTCTTCGAAACATCGACTGCCCTTCTAAGTACTCTGCTGCCACTGGATGTCCCTCTCGGATTCTGTGGCTTAAAACATAGTTATCATATCATATATAACATTATTCCACTCTCATCACCAAAGGGGATGATTTGTTGTGTTTCCTGTCTACTCTCTACCTTCTACCTCTCATCTTGTATTATATTAAATAAATAACACACTTCATTCCCTTTAATTTCCCTCTTTTATTGTGTGTTGCTGTTGCGGTGATGATCATCATCAATAAATTACTTAGCATCTATAATTATAATTACAATTATACCATTCTCTACTCTTCCTAACACCTAAATATTTC

mRNA sequence

ATTTTCTCTTAAATTGAGGAGAATATTCTCCTTGGCTAGTTTCTAATAGCAAATAGATAGTGAGGACAAAATATGGTATTTTTCAATATATATCCCAATAATTTATTACTATTTTCACATCTTACAAGTCATTGTTGTAATTAAGTTAGATTGTTTCAATTTGGTTGCATTTTTTAGATAATACGTTGAATGAGGAAATCTAATCTCTAATTTTGATGATAATACAAACTATATGTCAATAGTACAAACTATATAAATAGAATACAATATGTATTTTAAATTATCTTAGAAATTAATTAAAACGCATCTTACCTTAGAAAATATGTCGCTCATGGCAAAAAAGAAAAGTTTATTGATTCTCCTAAGCATTTTTATATTAAATCTTCCAATAGGGAATGCTTTGGATGAGTTAAAAGATGATGATACAAAAACAGGGGATTCCTTGAATGAGCTAGAGGAGGACATAGCTTTCATGAGATCAAAAAATGATGATAGTTTCTATGATTTGGAGGAGCTGAAAGCAGTTCCATTTGATTATTATCAACTTGTATTGCAATGGCAACCAGCAACTTGCAGCAATGTCATTTGTCTAAGACCCTCGTCGTCGAGGTTTAGCATCAACGGTCTTTGGGCTGCTAGCTATTCTCGTCCTATTGGTCGTTGCATCGGCAGTAGATTTCTTCAACAAAACATAACAAGCATAAGAAAAGAACTAGATGAGGATTGGCCAAGTTTGATAATAAGTTCAAACCCAGCAGTATGGAGTGAAGAGTGGAATACACACGGCACATGCTTCGAAACTCCAACTTTCAAAATCGCTGACTATTTCCGATTAGCTCTTTACCTTTTTTGGAGGAGCGACGTGGAGGAAGCCCTTAACAAATCTGGGTTGGAACCCATAAATGGAAGGCTATACCAAACGTCCGACATTGAAACAGCCCTAACCAAAAGCTTTAATGGGAAGCCTGCTCTACGCTGCACCCTCAACCTGAAGTATATTCTTCAGTCTCAATTGGCGGAAGTGGTTCTGTGCTTTGACAAATGTCTTCGAAACATCGACTGCCCTTCTAAGTACTCTGCTGCCACTGGATGTCCCTCTCGGATTCTGTGGCTTAAAACATAGTTATCATATCATATATAACATTATTCCACTCTCATCACCAAAGGGGATGATTTGTTGTGTTTCCTGTCTACTCTCTACCTTCTACCTCTCATCTTGTATTATATTAAATAAATAACACACTTCATTCCCTTTAATTTCCCTCTTTTATTGTGTGTTGCTGTTGCGGTGATGATCATCATCAATAAATTACTTAGCATCTATAATTATAATTACAATTATACCATTCTCTACTCTTCCTAACACCTAAATATTTC

Coding sequence (CDS)

ATGTCGCTCATGGCAAAAAAGAAAAGTTTATTGATTCTCCTAAGCATTTTTATATTAAATCTTCCAATAGGGAATGCTTTGGATGAGTTAAAAGATGATGATACAAAAACAGGGGATTCCTTGAATGAGCTAGAGGAGGACATAGCTTTCATGAGATCAAAAAATGATGATAGTTTCTATGATTTGGAGGAGCTGAAAGCAGTTCCATTTGATTATTATCAACTTGTATTGCAATGGCAACCAGCAACTTGCAGCAATGTCATTTGTCTAAGACCCTCGTCGTCGAGGTTTAGCATCAACGGTCTTTGGGCTGCTAGCTATTCTCGTCCTATTGGTCGTTGCATCGGCAGTAGATTTCTTCAACAAAACATAACAAGCATAAGAAAAGAACTAGATGAGGATTGGCCAAGTTTGATAATAAGTTCAAACCCAGCAGTATGGAGTGAAGAGTGGAATACACACGGCACATGCTTCGAAACTCCAACTTTCAAAATCGCTGACTATTTCCGATTAGCTCTTTACCTTTTTTGGAGGAGCGACGTGGAGGAAGCCCTTAACAAATCTGGGTTGGAACCCATAAATGGAAGGCTATACCAAACGTCCGACATTGAAACAGCCCTAACCAAAAGCTTTAATGGGAAGCCTGCTCTACGCTGCACCCTCAACCTGAAGTATATTCTTCAGTCTCAATTGGCGGAAGTGGTTCTGTGCTTTGACAAATGTCTTCGAAACATCGACTGCCCTTCTAAGTACTCTGCTGCCACTGGATGTCCCTCTCGGATTCTGTGGCTTAAAACATAG

Protein sequence

MSLMAKKKSLLILLSIFILNLPIGNALDELKDDDTKTGDSLNELEEDIAFMRSKNDDSFYDLEELKAVPFDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKCLRNIDCPSKYSAATGCPSRILWLKT

Homology

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BLAST of Clc09G19930 vs. NCBI nr
Match: XP_038889664.1 (ribonuclease MC-like [Benincasa hispida])

HSP 1 Score: 453.4 bits (1165), Expect = 1.4e-123
Identity = 221/265 (83.40%), Postives = 242/265 (91.32%), Query Frame = 0


Query: 3   LMAKKKSLLILLSIFILNLPIGNALDELKDDDTKTGDSLNELEEDIAFMRSKNDD-SFYD 62
           LM+KKKSL +LL I +LNL IG+ALDEL+DDD K  D+ NEL+ ++AFM SKN+D SFYD
Sbjct: 2   LMSKKKSLFLLLCILLLNLLIGDALDELEDDDIKNEDAFNELKYELAFMESKNNDHSFYD 61

Query: 63  LEELKAVPFDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQ 122
           LEE+KAVPFDYYQLVLQWQPATCSNVICLRP+SSRFSI+GLWA SYSRPIGRC GS+FLQ
Sbjct: 62  LEEMKAVPFDYYQLVLQWQPATCSNVICLRPTSSRFSIDGLWAGSYSRPIGRCSGSKFLQ 121

Query: 123 QNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDV 182
           QNITSIRKELDEDWPSLIISSNPAVWSE WN  GTCFETPTF+I DYFRLALYLFWRSDV
Sbjct: 122 QNITSIRKELDEDWPSLIISSNPAVWSEAWNLRGTCFETPTFQIVDYFRLALYLFWRSDV 181

Query: 183 EEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKC 242
           ++AL KSGLEPING+ Y  SDIETALTKSF GKPALRCTLNLKY+LQSQLAEVVLCFDKC
Sbjct: 182 QQALQKSGLEPINGKRYLKSDIETALTKSF-GKPALRCTLNLKYLLQSQLAEVVLCFDKC 241

Query: 243 LRNIDCPSKYSAATGCPSRILWLKT 267
           LRNIDCPS+YSAAT CP+RILWLKT
Sbjct: 242 LRNIDCPSQYSAATVCPTRILWLKT 265

[Close]

BLAST of Clc09G19930 vs. NCBI nr
Match: XP_004148696.1 (ribonuclease DdI [Cucumis sativus] >KAE8648922.1 hypothetical protein Csa_009230 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 3.1e-107
Identity = 198/265 (74.72%), Postives = 220/265 (83.02%), Query Frame = 0


Query: 3   LMAKKKSLLILLSIFILNLPIGNALDELKDDDTKTGDSLNELEEDIAFMRSKND-DSFYD 62
           LMAKKKSL ILL I +LNL I              GD+LN LEE+IAF  SKND  SFY 
Sbjct: 2   LMAKKKSLFILLCILMLNLLI--------------GDALNGLEENIAFTESKNDHPSFYG 61

Query: 63  LEELKAVPFDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQ 122
           LE +K VPFDYYQLVLQWQPATCSN ICLRP SSRFSINGLWAASYSRPIGRC G+ FLQ
Sbjct: 62  LERMKEVPFDYYQLVLQWQPATCSNAICLRPWSSRFSINGLWAASYSRPIGRCTGNGFLQ 121

Query: 123 QNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDV 182
           QNITSIRKELDEDWPSL+IS+NPAVWSE WN  GTCFE+PTF+I DYFRLALYLFWRSDV
Sbjct: 122 QNITSIRKELDEDWPSLVISANPAVWSEAWNLQGTCFESPTFQINDYFRLALYLFWRSDV 181

Query: 183 EEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKC 242
           ++AL +SG+EPING+ Y+ SDIE A+TKSF GKPALRC LNLKY+LQSQL++V LCFDKC
Sbjct: 182 QKALQESGIEPINGKQYEKSDIEAAITKSF-GKPALRCNLNLKYLLQSQLSQVFLCFDKC 241

Query: 243 LRNIDCPSKYSAATGCPSRILWLKT 267
           L +IDCPSKYS A GCP++ILW KT
Sbjct: 242 LAHIDCPSKYSPALGCPTKILWNKT 251

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BLAST of Clc09G19930 vs. NCBI nr
Match: KAA0039499.1 (ribonuclease DdI-like [Cucumis melo var. makuwa] >TYK15253.1 ribonuclease DdI-like [Cucumis melo var. makuwa])

HSP 1 Score: 372.9 bits (956), Expect = 2.4e-99
Identity = 177/230 (76.96%), Postives = 198/230 (86.09%), Query Frame = 0


Query: 38  GDSLNELEEDIAFMRSKND-DSFYDLEELKAVPFDYYQLVLQWQPATCSNVICLRPSSSR 97
           GD+LNELEEDI F+  KND  SF DLE +K +PFDYYQLVLQWQPATCS  ICLRP SSR
Sbjct: 7   GDALNELEEDIDFLEPKNDHHSFNDLEGMKEIPFDYYQLVLQWQPATCSAAICLRPFSSR 66

Query: 98  FSINGLWAASYSRPIGRCIGSRFLQQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGT 157
           FSINGLWA SYSR IGRCIGSRFL+QN+TSIRKELD+DWPSLIISSNPAVWSE WN HGT
Sbjct: 67  FSINGLWAGSYSRLIGRCIGSRFLEQNVTSIRKELDKDWPSLIISSNPAVWSEAWNLHGT 126

Query: 158 CFETPTFKIADYFRLALYLFWRSDVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPA 217
           CFETPTF+I DYFRLALYLFWRSDV++AL   G+EPING+ Y+ S IE A+T+ F GKPA
Sbjct: 127 CFETPTFQINDYFRLALYLFWRSDVQKALQDFGIEPINGKQYEKSYIEAAITEKF-GKPA 186

Query: 218 LRCTLNLKYILQSQLAEVVLCFDKCLRNIDCPSKYSAATGCPSRILWLKT 267
           LRC L+ KY LQSQLA+VVLCF+KCL  IDCPS+YS A GCP++ILWLKT
Sbjct: 187 LRCNLSGKYFLQSQLAQVVLCFNKCLARIDCPSQYSPALGCPTKILWLKT 235

[Close]

BLAST of Clc09G19930 vs. NCBI nr
Match: KAG6578584.1 (Ribonuclease DdI, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.3 bits (861), Expect = 2.5e-88
Identity = 171/265 (64.53%), Postives = 198/265 (74.72%), Query Frame = 0


Query: 4   MAKKKSLLILLSIFILNLPIGNALDELKDDDTKTGDSLNELEEDIAFMRSKNDDSFYDLE 63
           MA K +  +LL+I ILN+  G  LD                  DIAFM S   DS  +LE
Sbjct: 1   MANKNTFFLLLTILILNVLKGYGLD------------------DIAFMESY--DSSNELE 60

Query: 64  ELKAVPFDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQQN 123
           E+KAV FDYYQLVLQWQPATCSN+ CL+P SSRFSINGLWA SYSR IG+C GS FLQQN
Sbjct: 61  EMKAVLFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCSGSEFLQQN 120

Query: 124 ITSIRKELDEDWPSL-IISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDVE 183
           I+SIR+ELDEDWP L +I SNPAVW +EW+ HGTCFETPTF+I+DYFRL LYLFWRSDV 
Sbjct: 121 ISSIRRELDEDWPRLVVIGSNPAVWGDEWDLHGTCFETPTFQISDYFRLGLYLFWRSDVL 180

Query: 184 EALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKCL 243
           +AL K G+EP++GR Y   D E+ L  SF GKPALRC+ N+KY LQ QLAEV LCFDKCL
Sbjct: 181 QALEKYGMEPVDGRRYLAPDFESVLNVSF-GKPALRCSRNVKYNLQYQLAEVALCFDKCL 240

Query: 244 RNIDCPSKYSAATGCPSR--ILWLK 266
           R+I+CPS+YSAA GCP    ILW+K
Sbjct: 241 RHINCPSQYSAANGCPRNQFILWVK 244

[Close]

BLAST of Clc09G19930 vs. NCBI nr
Match: XP_023551239.1 (ribonuclease DdI-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 1.6e-87
Identity = 169/265 (63.77%), Postives = 199/265 (75.09%), Query Frame = 0


Query: 4   MAKKKSLLILLSIFILNLPIGNALDELKDDDTKTGDSLNELEEDIAFMRSKNDDSFYDLE 63
           MA + +  +LL+I ILN+  G AL+ +     ++ DSLNE                  LE
Sbjct: 1   MANENTFFLLLTILILNVLKGYALNGIA--SVESNDSLNE------------------LE 60

Query: 64  ELKAVPFDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQQN 123
           E+KAVPFDYYQLVLQWQPATCSN+ CL+P SSRFSINGLWA SYS  IGRC GS FLQQN
Sbjct: 61  EMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSGSIGRCNGSEFLQQN 120

Query: 124 ITSIRKELDEDWPSL-IISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDVE 183
           I+SIR+ELDEDWPSL +I SNPAVW +EW+ HGTC ETPTF+I+DYFRLALYLFWRSDV 
Sbjct: 121 ISSIRRELDEDWPSLVVIGSNPAVWGDEWDLHGTCLETPTFQISDYFRLALYLFWRSDVL 180

Query: 184 EALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKCL 243
           +AL K G+EP++GR Y   D E+ L  SF GKPALRC+ N+KY LQ QLAEV LCFDKCL
Sbjct: 181 QALEKYGMEPVDGRRYLAPDFESVLNVSF-GKPALRCSRNVKYNLQYQLAEVALCFDKCL 240

Query: 244 RNIDCPSKYSAATGCPSR--ILWLK 266
           R+I+CPS+YSAA GCP    ILW+K
Sbjct: 241 RHINCPSQYSAANGCPRNQFILWVK 244

[Close]

BLAST of Clc09G19930 vs. ExPASy Swiss-Prot
Match: Q7M438 (Ribonuclease DdI OS=Dictyostelium discoideum OX=44689 GN=ddiA PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 0


Query: 63  EELKAVPFDYYQLVLQWQPATCSNVICLR-PSSSRFSINGLWA--ASYSRPIGRCIGSRF 122
           E  K   FD+Y  V QW  + C +  C++      F+I+GLW   +  S P   C G  F
Sbjct: 25  ESSKPGDFDFYLFVQQWIYSYCDSQTCIQNKEREAFTIHGLWPENSDGSYP-SFCSGPSF 84

Query: 123 LQQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFET-PTFKIADYFRLALYLFWR 182
               I  +  +L+ DWPSL    N   W+ E++ HGTC  T P   I DYF   + L+  
Sbjct: 85  NVNAIQDLEDQLNFDWPSL-TGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLYTE 144

Query: 183 SDVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCF 242
            ++  AL    + P +   Y+  DI  A+T  F GKP ++C+         QL+ V +C 
Sbjct: 145 FNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCS-------SGQLSTVAVCI 204

Query: 243 DK-CLRNIDCP 249
           DK  L  +DCP
Sbjct: 205 DKNSLSIMDCP 206

[Close]

BLAST of Clc09G19930 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.8e-18
Identity = 60/173 (34.68%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 70  FDYYQLVLQWQPATCS---NVICLRPSSSRFSINGLWAASYSRPIGRC-IGSRFLQQNIT 129
           FD +  V QW PA CS   +  C       F+I+GLW       +  C  GS F    I+
Sbjct: 1   FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKIS 60

Query: 130 SIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDVEEAL 189
            ++ +L+  WP+++ ++N   WS EW  HGTC E+ TF  A YF+LA+ +    D+  AL
Sbjct: 61  HLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSES-TFNQAAYFKLAVDMRNNYDIIGAL 120

Query: 190 NKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCF 239
                 P NGR      I+  L   F   P LRC  + +  + S L +VV CF
Sbjct: 121 RPHAAGP-NGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKV-SYLVQVVACF 170

[Close]

BLAST of Clc09G19930 vs. ExPASy Swiss-Prot
Match: Q38716 (Ribonuclease S-2 OS=Antirrhinum hispanicum OX=49039 GN=S2 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-17
Identity = 62/192 (32.29%), Postives = 91/192 (47.40%), Query Frame = 0


Query: 70  FDYYQLVLQWQPATCS--NVICLRPS-SSRFSINGLWAASYSRPIGRC--IGSRFLQQNI 129
           FDY++LVLQW  + CS     C R    S+F+I+GLW  + S P+  C    +  L+   
Sbjct: 33  FDYFKLVLQWPNSYCSLKTTHCPRTRLPSQFTIHGLWPDNKSWPLSNCRDTSADVLKITD 92

Query: 130 TSIRKELDEDWPSLIISSNPA----VWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSD 189
             + ++L   WP L            W  +W  HG C   P +   DYF  AL L  R++
Sbjct: 93  KGLIQDLAVHWPDLTRRQRKVPGQKFWVTQWKKHGAC-ALPMYSFNDYFVKALELKKRNN 152

Query: 190 VEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDK 249
           V + L++  L P + R+   SD+  A+TK   G   L+C        +  L EV++CFD 
Sbjct: 153 VLDMLSRKSLTPGDQRV-DVSDVNGAITKVTGGIAILKCP-------EGYLTEVIICFDP 212

Query: 250 C-LRNIDCPSKY 252
                IDCP  +
Sbjct: 213 SGFPVIDCPGPF 215

[Close]

BLAST of Clc09G19930 vs. ExPASy Swiss-Prot
Match: Q40381 (Ribonuclease S-7 OS=Nicotiana alata OX=4087 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-17
Identity = 58/190 (30.53%), Postives = 89/190 (46.84%), Query Frame = 0


Query: 70  FDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQQNITSIRK 129
           F+Y QLVLQW  A C    C R   + F+I+GLW  + S  +  C      ++N  +I  
Sbjct: 24  FEYMQLVLQWPTAFCHTTPCKR-IPNNFTIHGLWPDNVSTTLNYCAA----KENFKNIED 83

Query: 130 ELDED-----WPSLIIS-----SNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRS 189
           +  +D     WP L  +      +   W  E+N HG C  + ++    YF LA+ L  + 
Sbjct: 84  DTKKDDLYKRWPDLTTAETYCKQHQNFWRHEYNKHGKCC-SESYNREQYFDLAMALKDKF 143

Query: 190 DVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFD 249
           D+  +L   G+ P  G  Y    I + + K   G P L CT  +      +L E+ +CFD
Sbjct: 144 DLLSSLRNHGIIPGRGMKYTVQKINSTIKKITQGYPNLSCTKGI-----MELVEIGICFD 202

[Close]

BLAST of Clc09G19930 vs. ExPASy Swiss-Prot
Match: Q40379 (Ribonuclease S-6 OS=Nicotiana alata OX=4087 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 4.2e-14
Identity = 63/203 (31.03%), Postives = 87/203 (42.86%), Query Frame = 0


Query: 70  FDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQQNITSIRK 129
           F+Y QLVLQW  A C    C +   S F+I+GLW  + S  +  C   +    NI     
Sbjct: 24  FEYMQLVLQWPTAFCHTTPC-KNIPSNFTIHGLWPDNVSTTLNFC--GKEDDYNIIMDGP 83

Query: 130 E---LDEDWPSLIISSNPAV-----WSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDV 189
           E   L   WP LI      +     W  E+  HGTC  +  +    YFRLA+ L  + D+
Sbjct: 84  EKNGLYVRWPDLIREKADCMKTQNFWRREYIKHGTCC-SEIYNQVQYFRLAMALKDKFDL 143

Query: 190 EEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKC 249
             +L   G+  I G  Y    I   +     G P L CT         +L  V +CFD  
Sbjct: 144 LTSLKNHGI--IRGYKYTVQKINNTIKTVTKGYPNLSCTKG------QELWFVGICFDST 203

Query: 250 LRN-IDCPSKYSAATGCPSRILW 264
            +N IDCP+  +  T     I++
Sbjct: 204 AKNVIDCPNPKTCKTASNQGIMF 214

[Close]

BLAST of Clc09G19930 vs. ExPASy TrEMBL
Match: A0A0A0KS79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636520 PE=3 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103
Identity = 182/230 (79.13%), Postives = 203/230 (88.26%), Query Frame = 0


Query: 38  GDSLNELEEDIAFMRSKND-DSFYDLEELKAVPFDYYQLVLQWQPATCSNVICLRPSSSR 97
           GD+LN LEE+IAF  SKND  SFY LE +K VPFDYYQLVLQWQPATCSN ICLRP SSR
Sbjct: 7   GDALNGLEENIAFTESKNDHPSFYGLERMKEVPFDYYQLVLQWQPATCSNAICLRPWSSR 66

Query: 98  FSINGLWAASYSRPIGRCIGSRFLQQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGT 157
           FSINGLWAASYSRPIGRC G+ FLQQNITSIRKELDEDWPSL+IS+NPAVWSE WN  GT
Sbjct: 67  FSINGLWAASYSRPIGRCTGNGFLQQNITSIRKELDEDWPSLVISANPAVWSEAWNLQGT 126

Query: 158 CFETPTFKIADYFRLALYLFWRSDVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPA 217
           CFE+PTF+I DYFRLALYLFWRSDV++AL +SG+EPING+ Y+ SDIE A+TKSF GKPA
Sbjct: 127 CFESPTFQINDYFRLALYLFWRSDVQKALQESGIEPINGKQYEKSDIEAAITKSF-GKPA 186

Query: 218 LRCTLNLKYILQSQLAEVVLCFDKCLRNIDCPSKYSAATGCPSRILWLKT 267
           LRC LNLKY+LQSQL++V LCFDKCL +IDCPSKYS A GCP++ILW KT
Sbjct: 187 LRCNLNLKYLLQSQLSQVFLCFDKCLAHIDCPSKYSPALGCPTKILWNKT 235

[Close]

BLAST of Clc09G19930 vs. ExPASy TrEMBL
Match: A0A5A7TE29 (Ribonuclease DdI-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00270 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 1.1e-99
Identity = 177/230 (76.96%), Postives = 198/230 (86.09%), Query Frame = 0


Query: 38  GDSLNELEEDIAFMRSKND-DSFYDLEELKAVPFDYYQLVLQWQPATCSNVICLRPSSSR 97
           GD+LNELEEDI F+  KND  SF DLE +K +PFDYYQLVLQWQPATCS  ICLRP SSR
Sbjct: 7   GDALNELEEDIDFLEPKNDHHSFNDLEGMKEIPFDYYQLVLQWQPATCSAAICLRPFSSR 66

Query: 98  FSINGLWAASYSRPIGRCIGSRFLQQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGT 157
           FSINGLWA SYSR IGRCIGSRFL+QN+TSIRKELD+DWPSLIISSNPAVWSE WN HGT
Sbjct: 67  FSINGLWAGSYSRLIGRCIGSRFLEQNVTSIRKELDKDWPSLIISSNPAVWSEAWNLHGT 126

Query: 158 CFETPTFKIADYFRLALYLFWRSDVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPA 217
           CFETPTF+I DYFRLALYLFWRSDV++AL   G+EPING+ Y+ S IE A+T+ F GKPA
Sbjct: 127 CFETPTFQINDYFRLALYLFWRSDVQKALQDFGIEPINGKQYEKSYIEAAITEKF-GKPA 186

Query: 218 LRCTLNLKYILQSQLAEVVLCFDKCLRNIDCPSKYSAATGCPSRILWLKT 267
           LRC L+ KY LQSQLA+VVLCF+KCL  IDCPS+YS A GCP++ILWLKT
Sbjct: 187 LRCNLSGKYFLQSQLAQVVLCFNKCLARIDCPSQYSPALGCPTKILWLKT 235

[Close]

BLAST of Clc09G19930 vs. ExPASy TrEMBL
Match: A0A6J1JWY7 (ribonuclease DdI-like OS=Cucurbita maxima OX=3661 GN=LOC111489590 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-84
Identity = 162/256 (63.28%), Postives = 189/256 (73.83%), Query Frame = 0


Query: 4   MAKKKSLLILLSIFILNLPIGNALDELKDDDTKTGDSLNELEEDIAFMRSKNDDSFYDLE 63
           MA K +  +LL+I ILN+  G A+                           ++DS  +LE
Sbjct: 1   MANKNTFFLLLTILILNVLKGYAM--------------------------ASNDSSNELE 60

Query: 64  ELKAVPFDYYQLVLQWQPATCSNVICLRPSSSRFSINGLWAASYSRPIGRCIGSRFLQQN 123
           E+KAVPFDYYQLVLQWQPATCSN+ CL+P SSRFSINGLWA SYS  IGRC GS FLQQN
Sbjct: 61  EMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSGSIGRCSGSEFLQQN 120

Query: 124 ITSIRKELDEDWPSL-IISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSDVE 183
           I+SIR+E DEDWPSL +I SNPAVW EEW+ HGTCFETPTF+I+DYFRLALYLFW+SDV 
Sbjct: 121 ISSIRREQDEDWPSLVVIGSNPAVWGEEWDLHGTCFETPTFQISDYFRLALYLFWKSDVL 180

Query: 184 EALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDKCL 243
           +AL K G+EP +GR Y   D E+ L  SF GKPALRC+ N+KY LQ QLAEV LCFDKCL
Sbjct: 181 QALEKYGMEPADGRRYLAPDFESVLNVSF-GKPALRCSRNVKYNLQYQLAEVGLCFDKCL 229

Query: 244 RNIDCPSKYSAATGCP 259
           R+I+CPS+YSAA GCP
Sbjct: 241 RHINCPSQYSAANGCP 229

[Close]

BLAST of Clc09G19930 vs. ExPASy TrEMBL
Match: A0A6J1E266 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025771 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.7e-31
Identity = 80/211 (37.91%), Postives = 112/211 (53.08%), Query Frame = 0


Query: 59  FYDLEELKAVPFDYYQLVLQWQPATCSN----VICLRPSSSRFSINGLWAASYSRPIGRC 118
           F  L  + +  ++YYQ+ LQWQPATCS+      C+     RFSI+G+W    S    +C
Sbjct: 10  FSTLVVIASCDYNYYQVTLQWQPATCSDANLQTPCVNTPQDRFSIHGVWPTLSSGSYPQC 69

Query: 119 IGS-RFLQQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFETPTFKIADYFRLAL 178
            G+  +    I++IR  L+ DWPS+I  +NP +WS EW THGTC   P+    DYF   L
Sbjct: 70  PGTPAYDGSKISTIRNRLNADWPSVIYGTNPTLWSHEWTTHGTC-SYPSLSQLDYFTFGL 129

Query: 179 YLFWRSDVEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAE 238
             + + D+  AL+K  + P +  +Y  S I  A+ K     P LRC  N  Y  + QL E
Sbjct: 130 DTYAKYDIYSALDKEDIYP-SEDVYSKSSINNAIRKITQKLPGLRCNTN-DYSRERQLHE 189

Query: 239 VVLCFDKCLRN-IDCPSKYSAATGCPSRILW 264
           ++LCF K  R  IDCPS       C + + W
Sbjct: 190 IILCFAKSNRAIIDCPSN---VVTCGNYVYW 214

[Close]

BLAST of Clc09G19930 vs. ExPASy TrEMBL
Match: A0A6J1DXG5 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025393 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29
Identity = 77/203 (37.93%), Postives = 115/203 (56.65%), Query Frame = 0


Query: 66  KAVPFDYYQLVLQWQPATCSN----VICLRPSSSRFSINGLWAASYSRPIGR-CIGSRFL 125
           +A  +DY+Q+V QWQPATCS+      C +     F+I+G W ++YSR   + C GSRF 
Sbjct: 21  EAAAYDYFQMVEQWQPATCSDKKLRFGCRQKPKQVFTIHGSWPSNYSRARSKPCRGSRFD 80

Query: 126 QQNITSIRKELDEDWPSLIISSNPAVWSEEWNTHGTCFETPTFKIADYFRLALYLFWRSD 185
              I  IR +L++ WP ++  ++   W  EW+ HGTC E   F    YF+ AL +  R D
Sbjct: 81  ITKIAPIRAQLNQYWPDVVNGNHQRFWEHEWSKHGTCSE-KQFPGRAYFQNALNIAKRHD 140

Query: 186 VEEALNKSGLEPINGRLYQTSDIETALTKSFNGKPALRCTLNLKYILQSQLAEVVLCFDK 245
           +   L K+G  P +G++ Q + IE A+TK+   +P LRC  N       QL E+VLC  K
Sbjct: 141 LLSILKKAGHNP-DGKVKQRASIEAAITKAIGKRPVLRCNFNKSN--ARQLHEIVLCVAK 200

Query: 246 CLRNIDCPSKYSAATGCPSRILW 264
               ++  +K++AAT CP+  +W
Sbjct: 201 NGVALESCTKFAAAT-CPNTFVW 218

The following BLAST results are available for this feature:

BLAST of Clc09G19930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889664.1	1.4e-123	83.40	ribonuclease MC-like [Benincasa hispida]	[more]
XP_004148696.1	3.1e-107	74.72	ribonuclease DdI [Cucumis sativus] >KAE8648922.1 hypothetical protein Csa_009230...	[more]
KAA0039499.1	2.4e-99	76.96	ribonuclease DdI-like [Cucumis melo var. makuwa] >TYK15253.1 ribonuclease DdI-li...	[more]
KAG6578584.1	2.5e-88	64.53	Ribonuclease DdI, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023551239.1	1.6e-87	63.77	ribonuclease DdI-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc09G19930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7M438	2.1e-21	33.51	Ribonuclease DdI OS=Dictyostelium discoideum OX=44689 GN=ddiA PE=1 SV=3	[more]
P23540	4.8e-18	34.68	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
Q38716	1.1e-17	32.29	Ribonuclease S-2 OS=Antirrhinum hispanicum OX=49039 GN=S2 PE=2 SV=1	[more]
Q40381	1.1e-17	30.53	Ribonuclease S-7 OS=Nicotiana alata OX=4087 PE=1 SV=1	[more]
Q40379	4.2e-14	31.03	Ribonuclease S-6 OS=Nicotiana alata OX=4087 PE=1 SV=2	[more]

BLAST of Clc09G19930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS79	1.3e-103	79.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636520 PE=3 SV=1	[more]
A0A5A7TE29	1.1e-99	76.96	Ribonuclease DdI-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold89...	[more]
A0A6J1JWY7	1.8e-84	63.28	ribonuclease DdI-like OS=Cucurbita maxima OX=3661 GN=LOC111489590 PE=3 SV=1	[more]
A0A6J1E266	8.7e-31	37.91	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025771 PE=3 SV=1	[more]
A0A6J1DXG5	6.2e-29	37.93	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025393 PE=3 SV=1	[more]

BLAST of Clc09G19930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 70..247 e-value: 1.2E-33 score: 116.8
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 66..261
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 68..264 e-value: 8.2E-43 score: 148.8
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 68..263
None	No IPR available	PANTHER	PTHR11240:SF49	RIBONUCLEASE 3	coord: 66..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G19930.1	Clc09G19930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding