Clc09G19850 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G19850
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionapidaecins type 14-like isoform X1
LocationClcChr09: 33356140 .. 33356625 (-)
RNA-Seq ExpressionClc09G19850
SyntenyClc09G19850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGACAAGAATTTTATCAATTCTTCTCCTTTCATGCTTTCTTTTTCTCTTTCTCTCTCCTGGTATACTCTTCTCTCTCTTATTCTTTGTAATTCTTTTCTTCATGGATTTTTATTGTATTCATATCCTTATCTCTTCTCTGTTCAAACTTTTTTTTTTTTTCCAAAGGATTTGGAGTAGAAATGATGGGAACTGTGGAACAACATCCAGCCTCTCTTACTCAAGAAAAGGCAACAATTACAAATACTGTTCTTCTCTGTCTCTCTAATATTGTCTCCAATTTTTTTAAACACAAATGAACCGTACCGGAAATAATTAATTTGATGAAGATTATGTTTACGTTTGGGTATTGCAGGAAACGAGTGTAGGAAAATGGAGGAAGATGATGGTTCAATTAGAGGACGACTATCATGATCCAGGACCTAATAACCCAATGGCAATGGTTGCATATAATATGGCTCCTTCTCCTGCAACACCTTGA

mRNA sequence

ATGGATAAGACAAGAATTTTATCAATTCTTCTCCTTTCATGCTTTCTTTTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAATGATGGGAACTGTGGAACAACATCCAGCCTCTCTTACTCAAGAAAAGGCAACAATTACAAATACTGAAACGAGTGTAGGAAAATGGAGGAAGATGATGGTTCAATTAGAGGACGACTATCATGATCCAGGACCTAATAACCCAATGGCAATGGTTGCATATAATATGGCTCCTTCTCCTGCAACACCTTGA

Coding sequence (CDS)

ATGGATAAGACAAGAATTTTATCAATTCTTCTCCTTTCATGCTTTCTTTTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAATGATGGGAACTGTGGAACAACATCCAGCCTCTCTTACTCAAGAAAAGGCAACAATTACAAATACTGAAACGAGTGTAGGAAAATGGAGGAAGATGATGGTTCAATTAGAGGACGACTATCATGATCCAGGACCTAATAACCCAATGGCAATGGTTGCATATAATATGGCTCCTTCTCCTGCAACACCTTGA

Protein sequence

MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMMVQLEDDYHDPGPNNPMAMVAYNMAPSPATP
Homology
BLAST of Clc09G19850 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 1  MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMM 60
          M+  RIL ILL+SCFLFLFLSPGFGVE M T+EQ  ASLT  +      E S GKWR +M
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQ-AASLTPHE-----KEMSGGKWRDVM 60

Query: 61 V-QLEDDYHDPGPNNPMAMVAYNMAPSPATP 91
          V QL +DYH PGPN P ++ A N A +P++P
Sbjct: 61 VDQLLEDYHGPGPNKPRSITAPNSA-TPSSP 84

BLAST of Clc09G19850 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-13
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 1  MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMM 60
          M+  RIL ILL+SCFLFLFLSPGFGVE M T+EQ  ASLT  +      E S GKWR +M
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQ-AASLTPHE-----KEMSGGKWRDVM 60

Query: 61 V-QLEDDYHDPGPNNPMAMVAYNMAPSPATP 91
          V QL +DYH PGPN P ++     AP+ ATP
Sbjct: 61 VDQLLEDYHGPGPNKPRSIT----APNSATP 81

BLAST of Clc09G19850 vs. NCBI nr
Match: KAA0039469.1 (hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK00659.1 hypothetical protein E5676_scaffold169G002810 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-05
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 29 MGTVEQHPASLTQEKATITNTETSVGKWRKMMVQLEDDYHDPGPNNPMAMVAYNMAPSPA 88
          MGT+EQ  ASLT  +      E S GKWR +MVQL +DYH PGPN P A  +YNMA   A
Sbjct: 1  MGTMEQ-AASLTPHE-----KEISGGKWRDVMVQLREDYHGPGPNKPKA--SYNMAAPSA 54

Query: 89 TP 91
          TP
Sbjct: 61 TP 54

BLAST of Clc09G19850 vs. NCBI nr
Match: XP_022133549.1 (apidaecins type 14-like isoform X1 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-04
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 1  MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMM 60
          MD   I S+LL+S  L LF S GFGV++MG+ E HP S+T  K      + S+ K RK  
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGE-HPESMTPLK------QESIQKSRK-- 60

Query: 61 VQLEDDYHDPGPNNP 76
          V    +YHDP PN+P
Sbjct: 61 VNEVANYHDPAPNHP 66

BLAST of Clc09G19850 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 1  MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMM 60
          M+  RIL ILL+SCFLFLFLSPGFGVE M T+EQ  ASLT  +      E S GKWR +M
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQ-AASLTPHE-----KEMSGGKWRDVM 60

Query: 61 V-QLEDDYHDPGPNNPMAMVAYNMAPSPATP 91
          V QL +DYH PGPN P ++     AP+ ATP
Sbjct: 61 VDQLLEDYHGPGPNKPRSIT----APNSATP 81

BLAST of Clc09G19850 vs. ExPASy TrEMBL
Match: A0A5A7TDZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002810 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 29 MGTVEQHPASLTQEKATITNTETSVGKWRKMMVQLEDDYHDPGPNNPMAMVAYNMAPSPA 88
          MGT+EQ  ASLT  +      E S GKWR +MVQL +DYH PGPN P A  +YNMA   A
Sbjct: 1  MGTMEQ-AASLTPHE-----KEISGGKWRDVMVQLREDYHGPGPNKPKA--SYNMAAPSA 54

Query: 89 TP 91
          TP
Sbjct: 61 TP 54

BLAST of Clc09G19850 vs. ExPASy TrEMBL
Match: A0A6J1BWA5 (apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 1  MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMM 60
          MD   I S+LL+S  L LF S GFGV++MG+ E HP S+T  K      + S+ K RK  
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGE-HPESMTPLK------QESIQKSRK-- 60

Query: 61 VQLEDDYHDPGPNNP 76
          V    +YHDP PN+P
Sbjct: 61 VNEVANYHDPAPNHP 66

BLAST of Clc09G19850 vs. ExPASy TrEMBL
Match: A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 1  MDKTRILSILLLSCFLFLFLSPGFGVEMMGTVEQHPASLTQEKATITNTETSVGKWRKMM 60
          MD   I S+LL+S  L LF S GFGV++MG+ E HP S+T  K        S+ K RK  
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGE-HPESMTPLK-------ESIQKSRK-- 60

Query: 61 VQLEDDYHDPGPNNP 76
          V    +YHDP PN+P
Sbjct: 61 VNEVANYHDPAPNHP 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031741770.11.1e-1358.24probable calcium-binding protein CML47 [Cucumis sativus][more]
KGN52469.15.7e-1358.24hypothetical protein Csa_008670 [Cucumis sativus][more]
KAA0039469.14.4e-0556.45hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK0065... [more]
XP_022133549.16.3e-0446.67apidaecins type 14-like isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU892.8e-1358.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1[more]
A0A5A7TDZ02.1e-0556.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1BWA53.1e-0446.67apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
A0A6J1BVK35.2e-0446.67apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G19850.2Clc09G19850.2mRNA