Clc09G19840 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G19840
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionapidaecins type 14-like isoform X1
LocationClcChr09: 33351638 .. 33352616 (-)
RNA-Seq ExpressionClc09G19840
SyntenyClc09G19840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAGTTTTGCTTGGTGTTTGCAAGAAAGCATTGTGTGAGAATCCTCCAAAAGGCCTCAAACTAATTAAGATATGGATAACCCAAGAATTTTATCAGTTCTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGTATACTCTTCTCTCTCCTTTTTTTTTTAATCTTCATGGATTTTTATTACATTCATACCCTCATCTCTTCTCTGTTCAAACTTTTTTTTTTTTTTTTCCAAAAGGATTTGGAGTAGAAATGATGGGAAATATGGAACATGCACCCCCTCTTACTCCACAGAAGGTAAATAATTAGAACTACTTTCCTTTTTCTCTATTATGCATGCTCTCCAAATTGTTTAGAAATCAAATATTACTTTTTTAAAAATGTGTTCATTTTAATCAGTGTGTATTTTCAAAAAAAGAAAAAATTAAAATAAACCAAAATTAAAAATATAAAGACGAAATAATTAAATGAATTGTGTTTATGCGTTTGAATACGACAGGAAATGAGTGGAGGAAGATGGAGGAAGATGATGGTTCAATTAGAGGAAGACTATCATGATCCAGGACCTAATAAACCAAAGACAATGACTACATATAATATGGCTCCTTCTCCTGCAACACCTTAATCCGTACATCTTATATATATATATATATATATGTGTGATCATCATCTTTTTAAGTGTATTTTAATCCATAAGCATAGACTTAAAAACTACTAGTGTGTTATGCTTTCTCTTTTCTCTTTCTATCTTCAAGTGTGTAATAATAATCCATGCATGCATGGACCTCAAAAGTAGTAACTTTTAATTGTCTTTTCTCTCAAATTATAAGTGTAATCCATGTATATTATGGACCTTAAAAGTGTTAACTCTTTCAGCATTTTTTCTCTAAGTCTACTCAGGTATCCTAATCCACATGACATGGACTTGAAATTACTTATGCACCATCATTTTAAGGGAAAATTCCGTTTTTTT

mRNA sequence

GTTTAGTTTTGCTTGGTGTTTGCAAGAAAGCATTGTGTGAGAATCCTCCAAAAGGCCTCAAACTAATTAAGATATGGATAACCCAAGAATTTTATCAGTTCTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAATGATGGGAAATATGGAACATGCACCCCCTCTTACTCCACAGAAGGAAATGAGTGGAGGAAGATGGAGGAAGATGATGGTTCAATTAGAGGAAGACTATCATGATCCAGGACCTAATAAACCAAAGACAATGACTACATATAATATGGCTCCTTCTCCTGCAACACCTTAATCCGTACATCTTATATATATATATATATATATGTGTGATCATCATCTTTTTAAGTGTATTTTAATCCATAAGCATAGACTTAAAAACTACTAGTGTGTTATGCTTTCTCTTTTCTCTTTCTATCTTCAAGTGTGTAATAATAATCCATGCATGCATGGACCTCAAAAGTAGTAACTTTTAATTGTCTTTTCTCTCAAATTATAAGTGTAATCCATGTATATTATGGACCTTAAAAGTGTTAACTCTTTCAGCATTTTTTCTCTAAGTCTACTCAGGTATCCTAATCCACATGACATGGACTTGAAATTACTTATGCACCATCATTTTAAGGGAAAATTCCGTTTTTTT

Coding sequence (CDS)

ATGGATAACCCAAGAATTTTATCAGTTCTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAATGATGGGAAATATGGAACATGCACCCCCTCTTACTCCACAGAAGGAAATGAGTGGAGGAAGATGGAGGAAGATGATGGTTCAATTAGAGGAAGACTATCATGATCCAGGACCTAATAAACCAAAGACAATGACTACATATAATATGGCTCCTTCTCCTGCAACACCTTAA

Protein sequence

MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTPQKEMSGGRWRKMMVQLEEDYHDPGPNKPKTMTTYNMAPSPATP
Homology
BLAST of Clc09G19840 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTP-QKEMSGGRWRKMMV-QLEE 60
          M++ RIL +LL+SCFL LFLSPGFGVE M  ME A  LTP +KEMSGG+WR +MV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHDPGPNKPKTMTTYNMAPSPATP 84
          DYH PGPNKP+++T    AP+ ATP
Sbjct: 61 DYHGPGPNKPRSIT----APNSATP 81

BLAST of Clc09G19840 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTP-QKEMSGGRWRKMMV-QLEE 60
          M++ RIL +LL+SCFL LFLSPGFGVE M  ME A  LTP +KEMSGG+WR +MV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHDPGPNKPKTMTTYNMAPSPATP 84
          DYH PGPNKP+++T    AP+ ATP
Sbjct: 61 DYHGPGPNKPRSIT----APNSATP 81

BLAST of Clc09G19840 vs. NCBI nr
Match: KAA0039469.1 (hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK00659.1 hypothetical protein E5676_scaffold169G002810 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 29 MGNMEHAPPLTP-QKEMSGGRWRKMMVQLEEDYHDPGPNKPKTMTTYNMAPSPATP 84
          MG ME A  LTP +KE+SGG+WR +MVQL EDYH PGPNKPK   +YNMA   ATP
Sbjct: 1  MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPK--ASYNMAAPSATP 54

BLAST of Clc09G19840 vs. NCBI nr
Match: XP_022133549.1 (apidaecins type 14-like isoform X1 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTPQKEMSGGRWRKMMVQLEEDY 60
          MD+  I S+LL+S  LLLF S GFGV++MG+ EH   +TP K+ S  + RK  V    +Y
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQESIQKSRK--VNEVANY 60

Query: 61 HDPGPNKP 69
          HDP PN P
Sbjct: 61 HDPAPNHP 66

BLAST of Clc09G19840 vs. NCBI nr
Match: XP_022133550.1 (apidaecins type 73-like isoform X2 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTPQKEMSGGRWRKMMVQLEEDY 60
          MD+  I S+LL+S  LLLF S GFGV++MG+ EH   +TP KE S  + RK  V    +Y
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKE-SIQKSRK--VNEVANY 60

Query: 61 HDPGPNKP 69
          HDP PN P
Sbjct: 61 HDPAPNHP 65

BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTP-QKEMSGGRWRKMMV-QLEE 60
          M++ RIL +LL+SCFL LFLSPGFGVE M  ME A  LTP +KEMSGG+WR +MV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHDPGPNKPKTMTTYNMAPSPATP 84
          DYH PGPNKP+++T    AP+ ATP
Sbjct: 61 DYHGPGPNKPRSIT----APNSATP 81

BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A5A7TDZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002810 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 29 MGNMEHAPPLTP-QKEMSGGRWRKMMVQLEEDYHDPGPNKPKTMTTYNMAPSPATP 84
          MG ME A  LTP +KE+SGG+WR +MVQL EDYH PGPNKPK   +YNMA   ATP
Sbjct: 1  MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPK--ASYNMAAPSATP 54

BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A6J1BWA5 (apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTPQKEMSGGRWRKMMVQLEEDY 60
          MD+  I S+LL+S  LLLF S GFGV++MG+ EH   +TP K+ S  + RK  V    +Y
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQESIQKSRK--VNEVANY 60

Query: 61 HDPGPNKP 69
          HDP PN P
Sbjct: 61 HDPAPNHP 66

BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1  MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTPQKEMSGGRWRKMMVQLEEDY 60
          MD+  I S+LL+S  LLLF S GFGV++MG+ EH   +TP KE S  + RK  V    +Y
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKE-SIQKSRK--VNEVANY 60

Query: 61 HDPGPNKP 69
          HDP PN P
Sbjct: 61 HDPAPNHP 65

BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MDNPRILS-VLLLSCFLLLFLSPGFGVEMMGNMEHAP--PLTPQKEMSGGRWRKMMVQLE 60
          M +P++ S +LLLSCFLLL  + G  VEM+ ++ H     ++P  +  GG+ RKMM+++ 
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEI- 60

Query: 61 EDYHDPGPNKPKTMTTYNMAPSPATP 84
           DY DPGPN   T + Y   P P +P
Sbjct: 61 MDYADPGPN-TNTRSGYLNPPPPPSP 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031741770.14.2e-1864.71probable calcium-binding protein CML47 [Cucumis sativus][more]
KGN52469.14.2e-1864.71hypothetical protein Csa_008670 [Cucumis sativus][more]
KAA0039469.11.6e-0966.07hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK0065... [more]
XP_022133549.16.2e-0650.00apidaecins type 14-like isoform X1 [Momordica charantia][more]
XP_022133550.14.0e-0551.47apidaecins type 73-like isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU892.0e-1864.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1[more]
A0A5A7TDZ07.7e-1066.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1BWA53.0e-0650.00apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
A0A6J1BVK32.0e-0551.47apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
A0A0A0KSB72.8e-0441.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G19840.1Clc09G19840.1mRNA