
Clc09G19590 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTAAGAAGAAAGCCCTAATTGAGAGAAAACCTGCAACGAGGAGAGCTGGGTCTCCAAGGACTCGAGGGCATCGCAGATATTCAAAAGTCGTTCCACTTCTTCATCGTCCTCCGTATCGCCGACCAGAGTTTGGGAGCCAGAACCGCGGTCGTTGGCGGCCCCATTTCCCGTTTCGGCAGATGGGTCTTGCCCGAGTGAGGAGGTGATTGTTGCTTTGTGAATGCAGTTGCTGATCTTCAATCGGAGCTCCGTGGCTCTGCCCAGAACCATGTCAATGCCGTCTTCTTCCATGGACGCTGCTTGCTCCGGCTCCGGCTCCACCTAGGGTTTTGAGGGAAAGGAAGAAAATGGAAGAATAGGGAAGTGGGGTTTTGAAAAGCACTAGACTATGAATCAGAAGCCGCCAAGATTAGAAGATTACAAGTGATTCTTCTTAGTAGAAGTAGTTTCTGGTGGCCAAATTTAGATTAAAAGCGATTGTGCTCTCTCTTTGATTGGCTATTGCAAGTTGGACTCACCCTTTGAGTTTAAACTCATTTTAGCTATACAATAAATGGAATCAATGAATGGTAATAATAATATGGGGAAGCATCCACCATTTAAAAATGTTTCCAGAAAATTAGTTCCACTTACGGTCCATCGATTACTCAATATCGAAATCACATACATAACCTATGATTTTCCGTTGCTTTTTCGCCAACCGTCTAGACCAAAGTAGCTATTGAAATAAATTTCTAAGAATATTTCCAATTTATTTATTTACTTTGTCTAGCTTGAATTTTGACCCAACATTTTCAATTTTTTACATTTCCAACCCAAAACAACCAAATCGACCAATTTAATTTCAAACACGAGTCCACAACCGAATTCGGTCGGTTGGGAGATTTATCCTCATTATATGTCGTCTAAGCTAAATAAAATTATGAAACTCACACCGTAATAAATCCTTCTAAGTAAATTAGTTGGTGCATACTTATATTATATTTTGAATTTTGAGACCATGAAATTGGAGTAATCAAAATGTATGGAAACAGAAGTTTTAGAAGCTTTACGTAAAATATTAAAGTTGATAGAATGAATATAAACAAAATAATGTTGTAAAAATTGATAATACACATGCAACCCACCCACGTAGTAATTAATAAACTAGTTATATATAAATGAAATTATAGAGGAGATACTCATTTGTCCCAACATTTTTCCTTTAATATTTCGGACATGCCTCTTCGAGTTTAAGTGTCCTTTAAAATATGTTCGAGGTGTAATTTTTGTGCCCACAATATGACTTTTGGGTGCATCTATTACACATGGAATACGTGCATCTATTACATTCATTCATGTACAGATGTGAAAAGAGTTTATTTGTACTATGTTGATGTTTTTCAATGTTTGGGACATGACTCATCGAGTTTAGACATATGTTGGGAGATGTCACGAAATTATAGGTGCAATTTATGCTGACGGGAAACGACTATTTGGTTGTCTAGTTTACACATCAAATTGGGTGCATTTATTCATGTATGCATTTGACCTAGGTATAAAAATACTGCTTTTTGAGTTTAGGTGTTCATTGAGAGATGGTGGAACAATGGAGACGATTCTTGAAATATTCACTTTACAATATTGTTGATACCAAATTCTGAAAGGGGGAAAACACACCGAAACTTCAGATGATAACAACGATAAATTTATAATTCAGGGATGACATGAGCTGCAAAATAAGAAGAATCTGGGCACTAGTGTGGTACTTGCCACAACAACTCTAATGCCTAAGTCAGGAATAGGCTTTTGGTTGTAACAAGAGTTTTTAAGGATTGGAGTAAATTTTGCTTCTTCTAAAGTCATAATAATGTATTTATAGTGAATTTCTGACCAAGAGCATCCATATTAGAGTTTTTTAGTCATATTAGGTTAGTTCATCAAATCCTTGGCCGAGGTCAAGGCTGAGGAGGCCATTTGGGCTTTTAAACCAAACTATTTTTCTTCCTAAGGCCCAAATAAGTCACAATATGAGGGTTGACCTCTAGCTCATCCTTTGTCAAGGTCAACGTCGAGCAGGTCAGTTTGGGCTCTCTTCCCATGTTGAATTGGGTCCTAGGGTGTGGTTTTTTTGCTCGGGTTTTGCAATTTTCTTGATTATATAGAATGCAAACTTCATAAAGTTGATTGTGCCCTCTTGTCTACATATACCCATCACAAAATGAATATGTATATATATATATATATATATGAAAGTTAAACAATCATCAATGACCTAGTGGTAGTGGGAATATAAAAAAAAAAAAAAAACCAAAGGGCCCGATTCGTGGTGGCCATCTACTTAGGATTTAATATCCTATGGATTTCCTTGACCCCCAAATATTGTAGGAATCAAATGGGTTATCTCTTAAAATTAGTCGAAGTGCACGTAGTACACTACTATTTGGGTATTGGTAGTATATTACACATTGAATTGGTGCATCTCTTAACAATTTTATTTTATATATACAAACTTTAATGGATAATAATTTAGTCTCTATCTTTTACAATTTGTAACATTCTAATCTTTATAAACAATGAGGATAAGGCAATTAATAAAATAGTGGTGCAGATTGAGTTAAGTGTGGATAATGTTGAGAGACAGAGAATGGGATGAATTGATGAAAATAGGAACATCAAACCCTGAAAAGAATAATTGGAAAAGAGGGATGGGTAGCTCTGCCTCTAACAAAATCTTCCCATTTCAAGTCCTCAAATGGCCACCATATTATAATACAACTATAACTAAACCATCCATCATTTCTTTTGCTGCACCCACAGCCTCTTTGCTGCCCAAAAGTTGCCGCAACTGTGGAGGTAAAGGAGCCATTGATTGTCCTGGATGTAAGGTTAATTATCATCCTCCCTCCACTTCTTACTTCATTAATTCATATGTTGTTTATTCTAAATTAAAATTCATGATCATAAAAGGAAAACAAATGTGAATTGGTGATTCAATTTGGTGGGTTACTTATGAGATCAATCACATTGCTATTCCTTTCCTTTTTAAACGTATTCATCATTTTACCCCCTAAAACCATAACTTCATATTGTTTTTAAAGAATTTACTAAGGGAGCGTTTGGGGCATGCAACGAGTTGAGTTGAGTTGAGTTGAAGTTTAGAAAGTTGTGAGCTCTTATAGAGAGTGTTTGGCCCAAGGAATTGGAGTTGTGAAGTCCACTCTATGGAGTTCATGAGCCCCATGACTAATAAATATCAATTTTAGGCTTCATTAAAAGGGGCAATTGCAAATATAGTAGTAAGGCTTAAGATATTATCAGATATAGCACAATGCAAAAAAAGGAATTGAAAATATAGCAAAATTTAGATCCCACTCTTAGACTCTATTAGACTATCTCACTAATAGAAGTATATCATCGATAGAGTCTATCACTCCTACATTTTGCTATATTTGCAATTCTTTTAAAATATTGCTGTACAATTATTTATTAGCCTAAAAGTACTACCCATTACAATTACCTTTAGTAAAAATCTTACACTGTGGGCCTCATGATTTCATGACTCTTTCACAACTCCACTGTTTGCTCCACACACCCTCGTAAGGAGTTAATAAAATATAAAATTGATATCTTTAATTGCAAGACAAAGCCCATAAACTCTTTGGGTCAAACACTCCTTAATTATTTTAGGAAACTAAAAAGAGATTCTTTAACCATTTTCGAATACAAGATACCTATATATATATTCTATACTAATCATATTATGTGATTGTTTTTTAGGGCACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTAAGTACTCTCACTCGATATATTTTTTACTTGTTTTTTTTTTCTCTCTCTCTCTCCCTTTTAACATAAACTCAAAGGTAGCTTAATTGAATTCATCCATTCATTCTCTTAAAATTGTTTGTTTTAGATGTTTTGATTGTCAAGGATTTGGATTAAAGAGTTGTCCGGAATGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAATGCATATTTTCCCCAATGCAATATATATTTTGTATTTATATGTCCTGATTTTTCTAATTTAAGGTTTTATTATGTTTTTTTTTTCTTTCTTTTTAGAATTTTAACAAACATTATTAAGAATGGTGAAATTAAACGTCTTATTCAAATTTTTATGCGTGCTAAAATAAATTATTCGAATT ATGTGTAAGAAGAAAGCCCTAATTGAGAGAAAACCTGCAACGAGGAGAGCTGGGTCTCCAAGGACTCGAGGGCATCGCAGATATTCAAAAGTCGTTCCACTTCTTCATCGTCCTCCGTATCGCCGACCAGAGTTTGGGAGCCAGAACCGCGGTCGTTGGCGGCCCCATTTCCCGTTTCGGCAGATGGGTCTTGCCCGAGTGAGGAGAGAATGGGATGAATTGATGAAAATAGGAACATCAAACCCTGAAAAGAATAATTGGAAAAGAGGGATGGGTAGCTCTGCCTCTAACAAAATCTTCCCATTTCAAGTCCTCAAATGGCCACCATATTATAATACAACTATAACTAAACCATCCATCATTTCTTTTGCTGCACCCACAGCCTCTTTGCTGCCCAAAAGTTGCCGCAACTGTGGAGGTAAAGGAGCCATTGATTGTCCTGGATGTAAGGGCACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGATTGTCAAGGATTTGGATTAAAGAGTTGTCCGGAATGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAATGCATATTTTCCCCAATGCAATATATATTTTGTATTTATATGTCCTGATTTTTCTAATTTAAGGTTTTATTATGTTTTTTTTTTCTTTCTTTTTAGAATTTTAACAAACATTATTAAGAATGGTGAAATTAAACGTCTTATTCAAATTTTTATGCGTGCTAAAATAAATTATTCGAATT ATGTGTAAGAAGAAAGCCCTAATTGAGAGAAAACCTGCAACGAGGAGAGCTGGGTCTCCAAGGACTCGAGGGCATCGCAGATATTCAAAAGTCGTTCCACTTCTTCATCGTCCTCCGTATCGCCGACCAGAGTTTGGGAGCCAGAACCGCGGTCGTTGGCGGCCCCATTTCCCGTTTCGGCAGATGGGTCTTGCCCGAGTGAGGAGAGAATGGGATGAATTGATGAAAATAGGAACATCAAACCCTGAAAAGAATAATTGGAAAAGAGGGATGGGTAGCTCTGCCTCTAACAAAATCTTCCCATTTCAAGTCCTCAAATGGCCACCATATTATAATACAACTATAACTAAACCATCCATCATTTCTTTTGCTGCACCCACAGCCTCTTTGCTGCCCAAAAGTTGCCGCAACTGTGGAGGTAAAGGAGCCATTGATTGTCCTGGATGTAAGGGCACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGATTGTCAAGGATTTGGATTAAAGAGTTGTCCGGAATGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAA MCKKKALIERKPATRRAGSPRTRGHRRYSKVVPLLHRPPYRRPEFGSQNRGRWRPHFPFRQMGLARVRREWDELMKIGTSNPEKNNWKRGMGSSASNKIFPFQVLKWPPYYNTTITKPSIISFAAPTASLLPKSCRNCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER Homology
BLAST of Clc09G19590 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida]) HSP 1 Score: 166.4 bits (420), Expect = 2.5e-37 Identity = 83/110 (75.45%), Postives = 87/110 (79.09%), Query Frame = 0
BLAST of Clc09G19590 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156.0 bits (393), Expect = 3.3e-34 Identity = 74/114 (64.91%), Postives = 84/114 (73.68%), Query Frame = 0
BLAST of Clc09G19590 vs. NCBI nr
Match: XP_022152486.1 (uncharacterized protein LOC111020203 [Momordica charantia]) HSP 1 Score: 155.2 bits (391), Expect = 5.7e-34 Identity = 74/108 (68.52%), Postives = 78/108 (72.22%), Query Frame = 0
BLAST of Clc09G19590 vs. NCBI nr
Match: KAG7033428.1 (hypothetical protein SDJN02_07484 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 155.2 bits (391), Expect = 5.7e-34 Identity = 74/114 (64.91%), Postives = 83/114 (72.81%), Query Frame = 0
BLAST of Clc09G19590 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo]) HSP 1 Score: 154.8 bits (390), Expect = 7.4e-34 Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 0
BLAST of Clc09G19590 vs. ExPASy Swiss-Prot
Match: O64750 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA2 PE=1 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 5.7e-05 Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0
BLAST of Clc09G19590 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34 Identity = 74/108 (68.52%), Postives = 78/108 (72.22%), Query Frame = 0
BLAST of Clc09G19590 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 3.6e-34 Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 0
BLAST of Clc09G19590 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 6.1e-34 Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 0
BLAST of Clc09G19590 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 73/114 (64.04%), Postives = 83/114 (72.81%), Query Frame = 0
BLAST of Clc09G19590 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33 Identity = 73/114 (64.04%), Postives = 82/114 (71.93%), Query Frame = 0
BLAST of Clc09G19590 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 134.0 bits (336), Expect = 1.3e-31 Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Clc09G19590 vs. TAIR 10
Match: AT2G34860.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein ) HSP 1 Score: 49.3 bits (116), Expect = 4.1e-06 Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0
BLAST of Clc09G19590 vs. TAIR 10
Match: AT2G34860.2 (DnaJ/Hsp40 cysteine-rich domain superfamily protein ) HSP 1 Score: 49.3 bits (116), Expect = 4.1e-06 Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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