Clc09G18580 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGCTATTCATGAGGTAAATCCTCAATATGAGATTTGGATCACAATGGACTAGCTTCTGCTTGGCTGGATATACAATTCGATGACCCCTGAAGTGGCAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGTGTTTCAATCGACTCGAAAAGGTAACTAAAAAATGGAAGAATATTTATGTATTATGAAGACTAATTCTGATAACCTTGAGCAAGCCAGTAGTCTGGTCCCTATAAGTTCTTTGGTGTCATAGGTTTTATTAGGATTTGATGAAGAGTATAATGCAGTTATTGCAATGATTCAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGTATGAAAAGCAGTTAGAGCATCAGACAACCTAGAAAAACTCAGTTGGATTTAATCATAATGCTATAGTCAATATGGCTAATACCAGGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGTAATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGGTATGTGGAAAAATAGGGCACACTACCTATTACTGTTACAACAAATATAATAAAGAATTTGCACCACCTAATGCCTTCCAGAATAAAGGAGGAAATTTTAATTCATCCCAAACCTGAAGAAATTCCTATAATCCTTCTGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACTATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGTGAGAGTCTTAATATTTCACATATAGGGGATGGTTGTCTGGTTGCTGGTGAAAATAAGTTGAAATTAGATAATATGTTGTGTGTACCTACTATAGCTAAAAATCTTGTGAGCATATCTAGACTTACTAAAGACAATAATGTGTTTATTAACTTTCATGATGGTTACTATCTTATTAAGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTTTATCAGCTGAAGGAAGTAGGAGTCAGTTCAAAGAAGAGTTTCATTGGATGCTCCATACAGTTGTAGCCAGTGGGAAAAAATAAAAATTAGTTTGCCCTTGTGTTATCTAACTCATGTTCTTCTGTTAGTAAAAAGATGTCCAAGACAGTTTGGCATAGATGTCTTGGTCACCATTCTATGCGAATACTTGAATATGTTTTAAAAAGTTGTAGTCTCCCTTATGTTAATGAAAAAGTTGAGTTTTGTGATTCTTGTCGATATGGAAAAGCACACTCTGTTGCATTCCCTAACTCTAACTCAAGGGTTACTAAGTTGTTTGATGTTGTATACTGATTTGTGGGACCCCGCACCAATTCTGTTGTCTGAAGGCTATAGATATTATGTTACTTTTGTTGATGATTTTAATGGATCTATCCTCTACGATTAAAAAGCGATACTCTAGTAGCATACCAGCACTTCACCACTATGATTAAAACACAGTTTGAAGGGGTTGTCAAAGTGCTTCAATTTGACAATTGAGGTGAATATGTTCGAGTTCATCAATTCTGCAAACAACAGTGTACTATCTCAAGGTTTTCATGTCCTTATACATCTGCCCAAAATGGGATAGATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCGTATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGGTAAGTCTCCTATTGAAATTGTATCTAATAAGAAGCTGAACTTTTCAAATTTGAAGATATTTGGATGCGCATGTTTTCCTTGTCTGAGGCGGTATAATGATCATAAAATGAGCTACCGTACTGAGAAATGTGTTTATTTGGGGCCAAGTATATGTCACAAAGGATATAAATGCTTAAGTCAGTTAGGTAGAGTATTTATCTCTAGACATGTTGTATTTAATGAATATGATTTTCCATATAAGTCCAATTTTGCAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCTCCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAACAATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGCTATTCATGAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGTGTTTCAATCGACTCGAAAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGTAATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGAAATTCCTATAATCCTTCTGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACTATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTTTATCAGCTGAAGGAAGTAGGAATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCGTATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCTCCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAACAATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGCTATTCATGAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGTGTTTCAATCGACTCGAAAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGTAATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGAAATTCCTATAATCCTTCTGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACTATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTTTATCAGCTGAAGGAAGTAGGAATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCGTATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCTCCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAACAATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA MFLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIHEFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLYQLKEVGMNVSIDIWWIWFHIACSSFLTITSLVGCIRICNFSHKWYANSGSKSGHDSNNQCTKAFTNSMAIFTSHYNNITTQNHLPNPTTPIPNNTSDPYTIDIPLTPENNPQPSPSNPIEQNHLLLA Homology
BLAST of Clc09G18580 vs. NCBI nr
Match: XP_016901889.1 (PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo]) HSP 1 Score: 62.4 bits (150), Expect = 9.0e-06 Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0
BLAST of Clc09G18580 vs. NCBI nr
Match: KAA0036141.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYK13500.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]) HSP 1 Score: 61.2 bits (147), Expect = 2.0e-05 Identity = 52/168 (30.95%), Postives = 76/168 (45.24%), Query Frame = 0
BLAST of Clc09G18580 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]) HSP 1 Score: 60.5 bits (145), Expect = 3.4e-05 Identity = 61/224 (27.23%), Postives = 98/224 (43.75%), Query Frame = 0
BLAST of Clc09G18580 vs. NCBI nr
Match: RVW41150.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Clc09G18580 vs. NCBI nr
Match: CAN60188.1 (hypothetical protein VITISV_002117 [Vitis vinifera]) HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Clc09G18580 vs. ExPASy TrEMBL
Match: A0A1S4E0Z3 (uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 4.3e-06 Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0
BLAST of Clc09G18580 vs. ExPASy TrEMBL
Match: A0A5D3CPY2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00160 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 9.7e-06 Identity = 52/168 (30.95%), Postives = 76/168 (45.24%), Query Frame = 0
BLAST of Clc09G18580 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05 Identity = 61/224 (27.23%), Postives = 98/224 (43.75%), Query Frame = 0
BLAST of Clc09G18580 vs. ExPASy TrEMBL
Match: A0A438E0F0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2040 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Clc09G18580 vs. ExPASy TrEMBL
Match: A5AG09 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_002117 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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