Clc09G18470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G18470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	L-type lectin-domain containing receptor kinase IX.1-like
Location	ClcChr09: 30886236 .. 30888413 (-)
RNA-Seq Expression	Clc09G18470
Synteny	Clc09G18470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGCTAAAGTGGGGTTGGGAGCTTTATGGCCAGGGAAGGCTTCTTGAAGCAGCCGACTCGAAATTCCATTGGAGCTTCGAAGATGAAGCTCAACAGCAACAACAGATAGAGTGTGTGATGGTTTTGTTGATCTATGGTGTGCTCATCCAGATATAAATTACAGACCATCAATAAGACAAGCAATTCATGTGCTGAACTTTTGAAAAATAGGTTGATTTAACACAGAATACATACAGTTTCAAGCACGATGTCACAAACAACATGTATGACAAGTGGACAACACAAGCAAACAGAAAAGTAATGACATGAAGATTGGTAACCAAAGGTGCAAGCTCACCTATGTCTGGGTTGTGCGCTTGGTGGAACGAAACTTCACTATAAAGAGTTAGAAATTATGATAGACTCCCTCTTTAGTGACTCACGTATAGCTTCCTCTTCAGTTTCAACTTAGGCTCTCCCTAAGTTTTAAGCTCCCCTTAATTCCAAAATAACGATTCTCCAAACTTTGTATGAGATCCCCTAAATACAACATACTTAGGCTCCCCCTAAATTTGAGACTTCATCATGTTCAACGTACTTAAGCTCCCCTAAATACAATATCAAAATAAAACTCCTCTCGAGTTCGACAATAGCTGCCGAACCAAAAGTCTCAACGACAAATACAAAAATTTTCACTGACACTACATGGAGGCTGAGGCTTAAACAAACCCTAAGCTCAAAACTCTAAATGCTCACTTTTCTAACAAGGAGGCTAACTCTAAAATTGAATTTGAGTACAATATAAATATGGCTAGCTTAAAAAATATCTTTTAGGAGTGAATAAACATTATTTGCAAGAAAATAAGAAAGACACATATGAAAATACAGATATGGAAAAGATATTCTGCAGGAATCTGCTACCAGACATGAAACAATGTCCCTGAGAATGTCCTCGACATGGTGCAAGACATGTTGCTCAAGTTTTACCAGTAATAAAATCAACCAACCATAATGTCGAACAAACTCCCTCTTCAGTAACTCATGTATAGCTTGCTCTTCAATCTCAACTTAAGCTTCCCCTAAGTTTGAGCTCCCCTCAATTTCACAATAATGCTTCTCTAAGTTTTGTATGAGATCCCCTCAATACAACATACTTAGGCTCTCCATAAGTTTGAGATTTCATCATGTTCAACGTACTTAAACTCCCCTTAAATACAATATCAAAATAAAACTCCTTCAAAACCAAAAATTTCAATGACAAATACAAAGATTTTCACTATCAATACATGGAGGTTGAGGCTTAGACAAGCCCTAAGCTCAAAACTCTCAATGCTCACTTTTCTAATAAGGCGGCTAACCCTAAAATTGAATTTGAGTACAATATAAATATGGCTAGCTTAGAAATTATCTTTTAGGACTGAATATATATTCTCGGCAAGAAAACAAGGAAGGAAGATATGAAAATCTGCAAATCACTTTGACAGTTATGGAAAAGATATTCTATAGAATCTGCTACCAGACATAAAACAATGCCCTTGATAATGTCCTTGTCATGTTGCAAGACATGTTGTTCAAGTTTTCCCCGTAATAAAATCAACCAACCACACTGTTGTAGCAATTTTGAAGCCCCACTACCGGTGTTCTTCCTTTATCGTTCCCTATACTTAGCATATCATCCTCTTCCCTTCAAACGACGGATTGATTCTTCTTCATTTTCGTCATCTCAAGATGGTGTTGTTTCTCAAATTGGTAGTGTACTAACTGCTTCTTCACAGGGGAGTACATCTACTTCAACTTCTTTTTCTGCATCTACTTCACTTCTGAGTACAAGGTAACTTTTGTCTTAGTGAGAGACATTTGGTAACTTTCTTATTCATTGGTCCTCTATTTCAATGAAACTCGCACCATATTATTCTTGGGATTGTGAGTCAACTCTCAAATTTGGTCTCTTATCCTAATTTGGCCCAGGGTTTGGTGAGGGTAGCATAAGGTAGCACTAGTAGTTGGAGTGTGCATTGGTGGGTGGTTTGCTCGTAGGCTGCATCTTTTTTCTGGAAGAAGAAAAAGAAGGAGATGATGATAAATGTTGTAGAGGATATTGTGTTGGGTAACAGTGAATTTGAAAGGGGGGAAGGACCTCAAAAATTTTCATATAGCAAGCTAGAAGCAACAAATAATTTTGGAGATGATTAA

mRNA sequence

ATGGTGATGCTAAAGTGGGGTTGGGAGCTTTATGGCCAGGGAAGGCTTCTTGAAGCAGCCGACTCGAAATTCCATTGGAGCTTCGAAGATGAAGCTCAACAGCAACAACAGATAGAGTGTGTGATGGTTTTGTTGATCTATGCCCCACTACCGGTGTTCTTCCTTTATCGTTCCCTATACTTAGCATATCATCCTCTTCCCTTCAAACGACGGATTGATTCTTCTTCATTTTCGTCATCTCAAGATGGTGTTGTTTCTCAAATTGGTAGTGTACTAACTGCTTCTTCACAGGGGAGTACATCTACTTCAACTTCTTTTTCTGCATCTACTTCACTTCTGAGTACAAGTGAATTTGAAAGGGGGGAAGGACCTCAAAAATTTTCATATAGCAAGCTAGAAGCAACAAATAATTTTGGAGATGATTAA

Coding sequence (CDS)

ATGGTGATGCTAAAGTGGGGTTGGGAGCTTTATGGCCAGGGAAGGCTTCTTGAAGCAGCCGACTCGAAATTCCATTGGAGCTTCGAAGATGAAGCTCAACAGCAACAACAGATAGAGTGTGTGATGGTTTTGTTGATCTATGCCCCACTACCGGTGTTCTTCCTTTATCGTTCCCTATACTTAGCATATCATCCTCTTCCCTTCAAACGACGGATTGATTCTTCTTCATTTTCGTCATCTCAAGATGGTGTTGTTTCTCAAATTGGTAGTGTACTAACTGCTTCTTCACAGGGGAGTACATCTACTTCAACTTCTTTTTCTGCATCTACTTCACTTCTGAGTACAAGTGAATTTGAAAGGGGGGAAGGACCTCAAAAATTTTCATATAGCAAGCTAGAAGCAACAAATAATTTTGGAGATGATTAA

Protein sequence

MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIYAPLPVFFLYRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQIGSVLTASSQGSTSTSTSFSASTSLLSTSEFERGEGPQKFSYSKLEATNNFGDD

Homology

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BLAST of Clc09G18470 vs. NCBI nr
Match: XP_008455115.1 (PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-23
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAADSK H SFEDE +QQ+QIEC+MV+ ++             
Sbjct: 571 MVMVEWVWELYGHGRLLEAADSKLHGSFEDEPEQQRQIECLMVVGLWCAHPDINCRPSIR 630

Query: 61  ---------APLPVFFLYRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQIG------SVL 116
                    APLPV  L +   LAYHPL   R I SSSFSS+QD VVSQIG      +VL
Sbjct: 631 QAIHVMNFEAPLPVLPL-QFPTLAYHPLSVNRSIISSSFSSTQDSVVSQIGNGFNSANVL 690

[Close]

BLAST of Clc09G18470 vs. NCBI nr
Match: ADN34262.1 (putative kinase [Cucumis melo subsp. melo] >KAA0031423.1 L-type lectin-domain containing receptor kinase IX.1-like [Cucumis melo var. makuwa] >TYK06874.1 L-type lectin-domain containing receptor kinase IX.1-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-23
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAADSK H SFEDE +QQ+QIEC+MV+ ++             
Sbjct: 507 MVMVEWVWELYGHGRLLEAADSKLHGSFEDEPEQQRQIECLMVVGLWCAHPDINCRPSIR 566

Query: 61  ---------APLPVFFLYRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQIG------SVL 116
                    APLPV  L +   LAYHPL   R I SSSFSS+QD VVSQIG      +VL
Sbjct: 567 QAIHVMNFEAPLPVLPL-QFPTLAYHPLSVNRSIISSSFSSTQDSVVSQIGNGFNSANVL 626

[Close]

BLAST of Clc09G18470 vs. NCBI nr
Match: XP_004137070.1 (L-type lectin-domain containing receptor kinase IX.1 [Cucumis sativus] >KGN43785.1 hypothetical protein Csa_017053 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 73/145 (50.34%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAAD+K H SFE+E QQ+QQIEC+MV+ ++             
Sbjct: 566 MVMVEWVWELYGNGRLLEAADTKLHGSFENEPQQRQQIECLMVVGLWCAHPDINCRPSIR 625

Query: 61  ---------APLPVFFL-YRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQ-------IGS 116
                    A LPV  L + +L   +HPL   R I SSSFSS+QD VVSQ         +
Sbjct: 626 QAIHVMNFEASLPVLPLQFPTLAYHHHPLSVNRPIISSSFSSTQDSVVSQSTGNGFNSTN 685

[Close]

BLAST of Clc09G18470 vs. NCBI nr
Match: XP_022136949.1 (L-type lectin-domain containing receptor kinase IX.1-like [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-09
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIYAPLPVFFLYRSLY 60
           MVM++W WELYG G L+EA D K H SF+DE QQQQQIEC+MV+ ++   P      S+ 
Sbjct: 566 MVMVEWVWELYGSGNLVEATDPKLHGSFQDEQQQQQQIECLMVVGLWCAHPDRNCRPSMR 625

Query: 61  LAYHPLPFKRRI------------------DSSSFSSSQDGVVSQIGSVLTASSQGSTST 116
              H L F+  +                   S + SSS  G  S   +V+T SSQ + S+
Sbjct: 626 QVIHVLNFEAPLPVLPSQLPTPSYLSLPIGGSVAASSSFSGTCS---NVITNSSQDTVSS 685

[Close]

BLAST of Clc09G18470 vs. ExPASy TrEMBL
Match: A0A5A7SMJ6 (L-type lectin-domain containing receptor kinase IX.1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001780 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAADSK H SFEDE +QQ+QIEC+MV+ ++             
Sbjct: 507 MVMVEWVWELYGHGRLLEAADSKLHGSFEDEPEQQRQIECLMVVGLWCAHPDINCRPSIR 566

Query: 61  ---------APLPVFFLYRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQIG------SVL 116
                    APLPV  L +   LAYHPL   R I SSSFSS+QD VVSQIG      +VL
Sbjct: 567 QAIHVMNFEAPLPVLPL-QFPTLAYHPLSVNRSIISSSFSSTQDSVVSQIGNGFNSANVL 626

[Close]

BLAST of Clc09G18470 vs. ExPASy TrEMBL
Match: E5GCR4 (Putative kinase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAADSK H SFEDE +QQ+QIEC+MV+ ++             
Sbjct: 507 MVMVEWVWELYGHGRLLEAADSKLHGSFEDEPEQQRQIECLMVVGLWCAHPDINCRPSIR 566

Query: 61  ---------APLPVFFLYRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQIG------SVL 116
                    APLPV  L +   LAYHPL   R I SSSFSS+QD VVSQIG      +VL
Sbjct: 567 QAIHVMNFEAPLPVLPL-QFPTLAYHPLSVNRSIISSSFSSTQDSVVSQIGNGFNSANVL 626

[Close]

BLAST of Clc09G18470 vs. ExPASy TrEMBL
Match: A0A1S3C0A2 (L-type lectin-domain containing receptor kinase IX.1-like OS=Cucumis melo OX=3656 GN=LOC103495366 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAADSK H SFEDE +QQ+QIEC+MV+ ++             
Sbjct: 571 MVMVEWVWELYGHGRLLEAADSKLHGSFEDEPEQQRQIECLMVVGLWCAHPDINCRPSIR 630

Query: 61  ---------APLPVFFLYRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQIG------SVL 116
                    APLPV  L +   LAYHPL   R I SSSFSS+QD VVSQIG      +VL
Sbjct: 631 QAIHVMNFEAPLPVLPL-QFPTLAYHPLSVNRSIISSSFSSTQDSVVSQIGNGFNSANVL 690

[Close]

BLAST of Clc09G18470 vs. ExPASy TrEMBL
Match: A0A0A0K286 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067400 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-18
Identity = 73/145 (50.34%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIY------------- 60
           MVM++W WELYG GRLLEAAD+K H SFE+E QQ+QQIEC+MV+ ++             
Sbjct: 566 MVMVEWVWELYGNGRLLEAADTKLHGSFENEPQQRQQIECLMVVGLWCAHPDINCRPSIR 625

Query: 61  ---------APLPVFFL-YRSLYLAYHPLPFKRRIDSSSFSSSQDGVVSQ-------IGS 116
                    A LPV  L + +L   +HPL   R I SSSFSS+QD VVSQ         +
Sbjct: 626 QAIHVMNFEASLPVLPLQFPTLAYHHHPLSVNRPIISSSFSSTQDSVVSQSTGNGFNSTN 685

[Close]

BLAST of Clc09G18470 vs. ExPASy TrEMBL
Match: A0A6J1C5S1 (L-type lectin-domain containing receptor kinase IX.1-like OS=Momordica charantia OX=3673 GN=LOC111008518 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 1   MVMLKWGWELYGQGRLLEAADSKFHWSFEDEAQQQQQIECVMVLLIYAPLPVFFLYRSLY 60
           MVM++W WELYG G L+EA D K H SF+DE QQQQQIEC+MV+ ++   P      S+ 
Sbjct: 566 MVMVEWVWELYGSGNLVEATDPKLHGSFQDEQQQQQQIECLMVVGLWCAHPDRNCRPSMR 625

Query: 61  LAYHPLPFKRRI------------------DSSSFSSSQDGVVSQIGSVLTASSQGSTST 116
              H L F+  +                   S + SSS  G  S   +V+T SSQ + S+
Sbjct: 626 QVIHVLNFEAPLPVLPSQLPTPSYLSLPIGGSVAASSSFSGTCS---NVITNSSQDTVSS 685

The following BLAST results are available for this feature:

BLAST of Clc09G18470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455115.1	2.5e-23	55.94	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Cucumis me...	[more]
ADN34262.1	2.5e-23	55.94	putative kinase [Cucumis melo subsp. melo] >KAA0031423.1 L-type lectin-domain co...	[more]
XP_004137070.1	1.6e-17	50.34	L-type lectin-domain containing receptor kinase IX.1 [Cucumis sativus] >KGN43785...	[more]
XP_022136949.1	2.7e-09	42.54	L-type lectin-domain containing receptor kinase IX.1-like [Momordica charantia]	[more]

BLAST of Clc09G18470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G18470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMJ6	1.2e-23	55.94	L-type lectin-domain containing receptor kinase IX.1-like OS=Cucumis melo var. m...	[more]
E5GCR4	1.2e-23	55.94	Putative kinase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3C0A2	1.2e-23	55.94	L-type lectin-domain containing receptor kinase IX.1-like OS=Cucumis melo OX=365...	[more]
A0A0A0K286	7.6e-18	50.34	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067...	[more]
A0A6J1C5S1	1.3e-09	42.54	L-type lectin-domain containing receptor kinase IX.1-like OS=Momordica charantia...	[more]

BLAST of Clc09G18470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G18470.2	Clc09G18470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding
molecular_function	GO:0004672	protein kinase activity