Clc09G18230 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G18230
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhloem filament protein
LocationClcChr09: 30503371 .. 30503787 (-)
RNA-Seq ExpressionClc09G18230
SyntenyClc09G18230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATTATTGGTGGAGGTATTGGTATTGGCGTTGAGCTTCCCGGTATAGGTGGCGGAGGCATCGGCATCGGGGGTGGCATCAACATCGGTATTGGCGGTACCGGCGATAACAGTGGTAGCGGCGGTAGTGGCGCATCCCCATGGGTTCAAATTTTCGATCTAGACAGCCCCATAGTTCCAGAAGTTGCAAGGTTTTCAGTGGAACGTTTCAACCTGGACCATAATAATACACTCAGGTACCAACACGTTTATGAAGGTTGGGTTCAGTTCGTGGATGAAAACACCAAAAGGTATCGTCTCAAATTAACAGTCCTAGACTGTTTGGAACGTTTGCTCAGGTTTGAGGTTATTGTGTGTGAAGTAACAAATGGCGATGACAAGTATAAACTTGAATCCTTCGTGCAAATCCACTAA

mRNA sequence

ATGAGTATTATTGGTGGAGGTATTGGTATTGGCGTTGAGCTTCCCGGTATAGGTGGCGGAGGCATCGGCATCGGGGGTGGCATCAACATCGGTATTGGCGGTACCGGCGATAACAGTGGTAGCGGCGGTAGTGGCGCATCCCCATGGGTTCAAATTTTCGATCTAGACAGCCCCATAGTTCCAGAAGTTGCAAGGTTTTCAGTGGAACGTTTCAACCTGGACCATAATAATACACTCAGGTACCAACACGTTTATGAAGGTTGGGTTCAGTTCGTGGATGAAAACACCAAAAGGTATCGTCTCAAATTAACAGTCCTAGACTGTTTGGAACGTTTGCTCAGGTTTGAGGTTATTGTGTGTGAAGTAACAAATGGCGATGACAAGTATAAACTTGAATCCTTCGTGCAAATCCACTAA

Coding sequence (CDS)

ATGAGTATTATTGGTGGAGGTATTGGTATTGGCGTTGAGCTTCCCGGTATAGGTGGCGGAGGCATCGGCATCGGGGGTGGCATCAACATCGGTATTGGCGGTACCGGCGATAACAGTGGTAGCGGCGGTAGTGGCGCATCCCCATGGGTTCAAATTTTCGATCTAGACAGCCCCATAGTTCCAGAAGTTGCAAGGTTTTCAGTGGAACGTTTCAACCTGGACCATAATAATACACTCAGGTACCAACACGTTTATGAAGGTTGGGTTCAGTTCGTGGATGAAAACACCAAAAGGTATCGTCTCAAATTAACAGTCCTAGACTGTTTGGAACGTTTGCTCAGGTTTGAGGTTATTGTGTGTGAAGTAACAAATGGCGATGACAAGTATAAACTTGAATCCTTCGTGCAAATCCACTAA

Protein sequence

MSIIGGGIGIGVELPGIGGGGIGIGGGINIGIGGTGDNSGSGGSGASPWVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDCLERLLRFEVIVCEVTNGDDKYKLESFVQIH
Homology
BLAST of Clc09G18230 vs. NCBI nr
Match: XP_038887119.1 (uncharacterized protein LOC120077304 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 49  WVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I DL++P V + A+F++E FN+ HN +LRY+ V EGW + +DE+  RYRL +   DC
Sbjct: 13  WIKITDLETPCVEDNAKFAIEEFNIKHNGSLRYKKVIEGWCKELDESHIRYRLLVQANDC 72

Query: 109 LERLLRFEVIVCE--VTNGDDKYKLESFVQ 137
           L RLL FE IV      NG+    LESF Q
Sbjct: 73  LRRLLEFEAIVFAHYSENGETTRILESFEQ 102

BLAST of Clc09G18230 vs. NCBI nr
Match: XP_038887120.1 (uncharacterized protein LOC120077305 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 4   IGGGIGIGVELPGIG-GGGIGIGGGINIGIGGTGDNSGSGGSGASPWVQIFDLDSPIVPE 63
           IGG +G+G+ LPGIG GGGI IGGG  +         GSGG+   P       D P + E
Sbjct: 3   IGGSLGVGLHLPGIGIGGGISIGGGFGL---------GSGGADEPPKSVPVPTDDPSIQE 62

Query: 64  VARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDCLERLLRFEVIVCEV 123
           + +F+VE FN+ +N+ L++Q VY+     +D     Y L LT +DCL+RLL F+  V EV
Sbjct: 63  LGKFAVEEFNIKYNDNLKFQSVYKYEKFVLDPYATNYNLWLTAIDCLKRLLNFKARVAEV 122

Query: 124 -TNGDDKYKLESF 135
             +G  +  LESF
Sbjct: 123 KVDGTIQLTLESF 126

BLAST of Clc09G18230 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 4   IGGGIGIGVELPGIGGGGIGIGGGINIGIGGTGDNSGSGGSGAS-PWVQIFDLDSPIVPE 63
           IGGGI IG+ +PGI    I IGGGI I     G   G      S  W +I  ++ P + E
Sbjct: 5   IGGGISIGLGIPGI---NISIGGGIGI----RGRKGGCKSHDPSKKWTEIKSVNDPAIIE 64

Query: 64  VARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDCLERLLRFEVIVCEV 123
           +A+F+V+ FN  H N L++Q V E WV    +  K Y ++L   DCL R L++  +V E+
Sbjct: 65  IAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEI 124

Query: 124 TNGDDKYKLESFVQI 138
                 + L SF QI
Sbjct: 125 CGTPPGWNLVSFNQI 132

BLAST of Clc09G18230 vs. NCBI nr
Match: XP_023530867.1 (uncharacterized protein LOC111793278 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 45  GASPWVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLT 104
           G   W+QI D+ S  V EVA+ +VE+FN+ H ++L+Y+ ++EGW   + +N  +YRL + 
Sbjct: 13  GVEKWIQIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCELGQNNLKYRLHIR 72

Query: 105 VLDCLERLLRFEVIVCEVTNGDDKYKLE 133
            +D L+R L +E +V E     +K KLE
Sbjct: 73  AIDFLQRSLLYEALVFE-----EKPKLE 95

BLAST of Clc09G18230 vs. NCBI nr
Match: XP_023530959.1 (uncharacterized protein LOC111793346 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 45  GASPWVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLT 104
           G   W+QI D+ S  V EVA+ +VE+FN+ H ++L+Y+ ++EGW   + +N  +YRL + 
Sbjct: 13  GVEKWIQIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCELGQNNLKYRLHIR 72

Query: 105 VLDCLERLLRFEVIVCEVTNGDDKYKLE 133
            +D L+R L +E +V E     +K KLE
Sbjct: 73  AIDFLQRSLLYEALVFE-----EKPKLE 95

BLAST of Clc09G18230 vs. ExPASy TrEMBL
Match: A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 45  GASPWVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLT 104
           G   W++I D+ S  V EVA+ +VE+FN+ H ++L+Y+ ++EGW   + +N  +YRL + 
Sbjct: 13  GVEKWIKIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCELGQNNLKYRLHIR 72

Query: 105 VLDCLERLLRFEVIVCEVTNGDDKYKLE 133
            +D L+R L +E +V E     +K KLE
Sbjct: 73  AIDFLQRSLLYEALVFE-----EKPKLE 95

BLAST of Clc09G18230 vs. ExPASy TrEMBL
Match: A0A6J1EI90 (uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC111434592 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.3e-09
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 49  WVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I D+    V EVA+ +VE+FN+ H ++L+Y+ ++EGW   + +N  +YRL +  +D 
Sbjct: 17  WIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKYRLHIRAIDF 76

Query: 109 LERLLRFEVIVCEVTNGDDKY-KLESFVQI 138
           L+R L +E +V E     ++  KL SFV I
Sbjct: 77  LQRSLLYEALVFEEKPKFERIRKLISFVYI 106

BLAST of Clc09G18230 vs. ExPASy TrEMBL
Match: A0A6J1EQ39 (uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 49  WVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I D+    V EVA+ +VE+FN+ H ++L+Y+ ++EGW   + +N  +YRL +  +D 
Sbjct: 17  WIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKYRLHIRAIDF 76

Query: 109 LERLLRFEVIVCEVTNGDDKY-KLESFVQI 138
           L+R L +E +V E     ++  KL SF+ I
Sbjct: 77  LQRSLLYEALVFEEKPKFERIRKLISFIYI 106

BLAST of Clc09G18230 vs. ExPASy TrEMBL
Match: A0A6J1EJ75 (uncharacterized protein LOC111434636 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 49  WVQIFDLDSPIVPEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I D+    V EVA+ +VE+FN+ H ++L+Y+ ++EGW   + +N  +YRL +  +D 
Sbjct: 17  WIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKYRLHIRAIDF 76

Query: 109 LERLLRFEVIVCEVTNGDDKY-KLESFVQI 138
           L+R L +E +V E     ++  KL SF+ I
Sbjct: 77  LQRSLLYEALVFEEKPKFERIRKLISFIYI 106

BLAST of Clc09G18230 vs. ExPASy TrEMBL
Match: A0A0A0K477 (PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 51/135 (37.78%), Postives = 69/135 (51.11%), Query Frame = 0

Query: 4   IGGGIGIGVELPGIGGGGIGIGGGINIGIGGTGDNSGSGGSGASPWVQIFDLDS-PIVPE 63
           IGGGIGIG+ +PGI    + IGGGI IG    G  S      +  W Q+ +  +  ++  
Sbjct: 28  IGGGIGIGIGVPGI---KVSIGGGIGIGSRKGGCKS---HDPSKKWSQVPNAQADQVIIN 87

Query: 64  VARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDCLERLLRFEVIVCEV 123
           VA F+V  FN  + N L +  V E WV  + +  K Y ++L   DCL R L F  IV E+
Sbjct: 88  VANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEI 147

Query: 124 TNGDDKYKLESFVQI 138
                 + L SF QI
Sbjct: 148 VGVPPGWNLFSFTQI 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887119.11.8e-1347.78uncharacterized protein LOC120077304 [Benincasa hispida][more]
XP_038887120.12.5e-1242.11uncharacterized protein LOC120077305 [Benincasa hispida][more]
ADN34263.11.8e-1038.52phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament... [more]
XP_023530867.12.0e-0939.77uncharacterized protein LOC111793278 [Cucurbita pepo subsp. pepo][more]
XP_023530959.12.0e-0939.77uncharacterized protein LOC111793346 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ELQ92.8e-0938.64uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1EI908.3e-0937.78uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1EQ391.1e-0836.67uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EJ751.1e-0836.67uncharacterized protein LOC111434636 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0K4773.1e-0837.78PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.10coord: 49..138
e-value: 8.3E-9
score: 37.3
NoneNo IPR availablePANTHERPTHR47116:SF5PHLOEM FILAMENT PROTEINcoord: 46..137
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 48..134
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 59..133
e-value: 1.1E-15
score: 57.4
IPR027214CystatinPANTHERPTHR47116PHLOEM FILAMENT PROTEINcoord: 46..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G18230.2Clc09G18230.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity