Clc09G18150 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G18150
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
LocationClcChr09: 30207775 .. 30218571 (-)
RNA-Seq ExpressionClc09G18150
SyntenyClc09G18150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTTTTAGCTCCCTTAGCAAACGATGGATTAAGGGAAGAACCTACTGCTCAGAATGATGACAATGAGTTGTTAGATTTTTTAAATGATTTGCGAGAACCGATGAGAGAAATGGAATATGATGAAGATGAAGAAGAATTTGGGGATGAAATGCTGATAACATTGAACAAAGTGATACTTCAAACATTTTTTAGGAGTTAATGGATGAAGCAAGTAACCTGTTGCACCCTGGTTGTACAAAAGTTTCCTCATTGAACTTCTTGGTGAGATTGATGCATATTAAGGTTCTCAATAATTAGAATAACAAATCCTTTGATATGCTATTAGATTTGTGGAAAGATGCCTTTCCAGTTGGTTCCTATATACCTAGTTCTTTTTATGAAGCCAAAAGAAAATTACATGACTTAGGACTAAGATATGAGTCTATTCATGCTTGCAAGTCAAAGTTGTCCAACGTGTGGGAAGTCTCGATACAAAATGAAGGATGGAACAAGTAAGAAAATTCCAAACAAAATTTTACATCATTTTCCTTTCTTCAAGTGCAAAATGAATTGGTATGGTTCAAATTCATTATTATTTTTTTACTTTTCTAGTAAATCTAAATTTTAGGTTTTTTTTTTATTGAATTACAGACAATCAGTAAGGGTGAAAAAGTTACCAAGTGAAATTGTTTCACAAGAGTCATTTCTCAGAGAGTAAGCTATGCCGCCAAAGAAGCATATATAAGTTATATTTTATTATACATGTGTAATTTTATATTAACCCTTATATATATATATATATATATGAATATAACCTCCAAAAGCATTATAAATATAGTTGGCAACGCAAGAGCAGATCAGACTATCATCACAAGATGGACTTGAACTAACACCGAAGGTAGTTATTTGTGAACGAGTTTTGGGGAAACGATCAAGCCACACTAAAGGTCTTGGATGGAACCCAAAACCCAATTTAGCTAAAGGTGGTGTATCTTTCTCACAGTTTGAGGAAGAGATTGAGAATAAGTATGAAAAGCTTGAGGCGGTGGTGACGACCTTCCAGGAGGAAAATCCCATGTTAAGGTCACAATTTTCGAATGTTCAAGATCAATTGGCTAAAATGGTGAGACAGTTAGGTGCGCAACAAAGGCAAGGAGATGACCCTCAAACAACTAGGTACGTTTGAGAACTTTCTAACTTCAAATATGTGTGGATTTAGGAACTTAATTTGGTTGTGTCTATCCTGCAGTTATGGTAGCCACATTTGAGTATGTGTGTTTTAGTGGATTTAGGAACTTACTTTGGTTGTGTGGCTATCCTGTAGCTATAGTAGCCACTTCTAATATGTGTGTTTTGGTGGATTTCGGAACTTAATTTGGTTGTGTGTCTATCCTGTAGTTATGGTAGCCACATTCAAATGTGTATTTTAGTGGATTTAGAACTTACCTTGGTTGTATGGCTATCCTGTAGTTATGGTAATCACTTCGATTATGTGTGTTTTGGTGAATTTCAAAATGTGTGTTCTGTGGTTTATGAACTTAATTTGGAGTTATGGTTAGCCACTTCCTATCTTGTATGTGTGTTTAAGACAATTTTGTAGCTTTTTAAGAATGTTTTGTTGCTGCCTTGAAGGTTTAAAGGGTGTTAAGGACACTCGTAGCTTGGAGGGAAAGGGGTTCATATGTAGACCAAGAGGGAGAGCGAGAGAGATACCGAGATGGAGTGTGTGTGGAGGGGGGGAGATCATGTCATTTTAATCACTTTTTAGATAGTAAAATGGTTGTTCGTGGTGTCATGTTTCAACATGTTCTTAGCTTCCATGTTTAGTCATGTCTCATAACCATTTAAATTCATTTTTCTTTATATATTTCTTCATAATATTTGCTTTTTCCTATTTCAGGTTGTACGAGTGAATTCTCAAATATTGTTTTTTTGGAGACTGCAAGAAGATTTTGAGATGATTAATTTTTTTGGTTTAGCATCTCAAGTATATATTTTGGCTTAGGATTGTCAAACTTTTTTGTGTATAGAGGATTGCTAAGAAGTTATTTTGCTTTAGCATCCCAAGTATATTTTCTGGAATGTGAACTTTTTTGTATAGGGGATTTCTAAGAAGTTTTTTTGATTTAGAATCCCATTTATATTTTGGCTTAGGGAATGTTAACCTTTTTTTGTTCAAGAGATTTGTAAGAAGGCTAGTAAAATGTATATAATATTCTTATTCTTAGAATTTTAGTAACTGTATTGAACATTAAGTTATTTTTAATATATAAGTTTATTTTCGTTATATTTGTTTGAATATTAAATTTTGTTTGTACAAAATTATTAAATAATAAAAAATAAAATTTTGGTTATTTAATTATTACAATTTAAAATTTATAAAATTGTAAAAAACTTATGCCGACGCATAATAAAATGTCGGCAAAAATTGAACAAAACCCTTAAATGTCCATTTTCTAAAAATTAGGTTTTTGACGATGTAACTCCAATTCGTTGGGATAAAGTATATGCCGACGCAATTTGATAAGGGTATTTATGTCGATGCATCTAGTTTCGTCGATAGAAGTAGATATATGCCAACAAAATTGGTTTTTCGTCAGGAGCGACTTCTCCCGACGTGGAAACATCGACATTTTTATCGACGCAAAACTTTTCGTCCACATAAGCTTTGCCAACGAAATTTGGACTTTTGCCAGTGTTTTATTGCATCGGCAAAAGGGAACATTCGTGTAGTGAAATCAAGATGGAATAGATGAAGAGCCTGCAGAGCAATATATAGGTAGAACGAGTGTACTTGCCGAGTCATCTCAAGGCAGTAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATGGACATAATGAGATCAACTGTTGAAATGCAGAACACACACATGGGTAGATTTGCATCGTGGCAAAAGGAAAAGTATGAGTTGGAGTTCGAGTGTCGAGAGGAAGTAGTGAACGCCATATATAACATTGATAGCTTGAATGAGGATGACCAAGTCGCCCTTATTGACCTCCTTGTCACATACATTCAGAAGACAAATTGCTTCCTTGCAGTATCAGAACATGCAAGGAAGAGGTACTGCCTCCGTCTACTAGGACGAAACATGTAGACTGACCACTGATATTTGAACAAAAACCCGTATAATGTGTTTCTAGTCTTTTCAATAGCAACATATGAATCACCAAATGGATAATGGACTGTTATATGTTGAAAAGAATGATAACTTTTGTATACGTCACGACATGTAATTTTTGTGTTTGTATTATGACGTGGATTTTATAGGTATGGAAAAGAATGCTTCCTTTCGTCACTCATAATTACTAAAGTTTGGGGACCAATAGTGAATTAAGATTCATAAATTGTTCATGTTAAATAGGTATGATGTGTATTTGGAGATATGAACAAAATGATTATGTAATTGAGTATTATGATCGAGAGTGAGCAAGAAAGAGGCAGTGAGACAGAGAGAGAGGGAGCAAGAGAGATAACGAGAGAGAGAGAGCGAAAAAGATAGAGAGAGAGAATGAGAGAGATAGCGAAAGAGAGAGAGCGAGAACACACATGCCAACTTGGTGACCCAACTCGAAAATATTGGGTTAGGTTGGGTTGGGTTGACCCTAAAAAATGGAATCGATGGGCTTGAGAGTAGGCATAGAATTTTCAGGTTGGTCCAAAAATAACAACTAACCCGGCCCAACCCAACCCATGTAAACCCCTAGTGAAGAAAGATGTTCAATTTATTCGCTTCTTGTTTGTTTATGATTGAGAGCTAAGCATGTTGTAAAAAGTTTTTTCTTTATTTTATACACGTTTTGTAGCTTACGAATAAAAAATATATCTATATAAGTTAAGTAAATTGAGGGTTGAAAAATTGTTGTACAAATTTGTGTAATCTGTACAAATTTGTTGTACCCTTATAATTATTACCAACTTAACTCAACTCATTTAATTTTAATACTATCTTTTTCTTTAAACATTTTCTCTAGAAAGAGCAAAGATGTACTAAGCGCTTCACAAGGTGATCCATCAACGATGTAATGGGACTAGTGGCATCATTTTCGTATATGATCATGTCTTCGAGATTTTTAACGTTAATTTTGCAACATCTCAAGCTTTAGTATGTTAAATCTATATTTTTTTTTCCAATAGTATTGGGTTTATTTTCTCATTTAAATCGTTAGTTTTTAACTCTCAATTGGCTTAATCACGGTTGGTTTAAGAACGAAAAATTAACCTACTATATAACTAATATTTCACAGATGTCCTAAAATTTGGTAATGTTTGATAATTCTCAATTTTGAGAATTATTTAGGTTCTAAACCAAAGGATTTTGATAAAAATTGCATACATTTAGTCCTTTTCATAGAAAAACCAAGTTTAAAAATAGAAAATAATTCATAGATGATATGTTTAATCTTAAATGTGAAACGTTTGACAAGATTCTTTTAAATTTTTGTATGTATGTTCTTTTTGCAGAAAATTCATTGATTCCAAATTATTACAGCATTCAACTAGATTGCTACGACAATCTGCCACGATAGAATTAAATTTCTAGATCTTATTGTGGGCTTGATTTTAGGACTTTCTTCTCTAATCTTGCAAATTAGGGTAGCCCACATCTTTAGCACCTACCACCATTGCTTGGGATCTCTAAGAAGTCTCCAAAATCTCTCCATTCATCTGTCCATTCTTCATTTGTCCTTCCTCCAACATATAAATTTTTTTTTACTCTTTTATTTATTGTTTTTCCTTTTTTTTCCGTTGAAGTTTAGACATGCTAAGTTGGTATTGATCCAGTTCATTCAAAAGTTTGGAACTATTAAATCTTGAAAAAGCTTGAATCAAGGTAGATTAAGGCTAGTGAGCATCTATTTCTTCAAGTTTTAGTTTCTTGCCGTGTTATTTCACTATTTTAATTCAATTTTAGTTTGAGTTGTATTTTTTTTGTTTATGCAAATTTAATTTTCCATCAACTTAGTATACGTATATTCATTCCAATTTACATCAATTTATCTAATAAAGTGTTCTTAATTTGAGTTTATTTAGTTATTCATGGTTTCTTCTCTTCCTATTCTTTTAGTTTTAGTAGTTTAATTTTAATTTCTTAATTTCATTTCTCTCTTGTTAATCGATCCAATCCTATTCGAAAGTTAGGATTGTAATAGCTAGAATTTCCTTGAAAAAGGAAGAGCAAGTAGATTGAAGGAAGGCAACATGTTGCTTGTGTATTTATTTCTTTTTAATTTTCAATTAGGTAGTCTCTTTAGATCTAATTGTTTCTTATTTAACTTACTATGAATTGCCTTCCATCTTTTTCTTTTCTTTCCTTTTCTTTTCTCTCTCTCTCTCTCTTTTTTTTTTTTTATTCTTCAATCATGGGCTAAACTTTTCTTTGGGATTCAAATATGTGAATGCTCTAAAGAAAGTAGCAAAGACCTAATATGTAAAATTGAGTAGCTTGACTAAATCCATTGCTTGGTTTGCTTTTATTGATTTTAATTTCAACATTATTAGTCTAGCTTGATCACCTAGATTAGTATACTAAAATTGAATCTAATACGGAAACGATTAGGTGAAATTTGGTTCTCATAAAAGTGATTTAGGAAAACAGCCTAGAAATAAGTCTTTGTTTTTTACCATAGACCTAGGGCAAAACCTTTAGAACCAAATGATTGTATTTTTAATTATCTAAGTTCACATTAGCCATAGAAATATAAGTTTAATGACTTGGTCTTTTAAATGTGTTTAAGATCGAATAGGTGTTGAATCCGGTTCACCAAAGCAATGAAATTGAGTCAAGTTAAAAGTTTTCATATTAGACTGAATTTACTTTCAAAAGGAGTATGAACATGTTTGAATCCCTACTTTTTCTTCCAATCTTTTTACTACTTGTCGATTGTGCACTTGCACTAGACTGGAGATTTTTTTTTTCTTTCAAAGAAATTTTAATTTAGTAAAAGTGAATTCGGTCGATCAATGTTCCATAGCTAGATTATGGCAACATTTTGAGACATTTTGGCCTTTTATTATTCTCTCTCATCTTTTAATTTCATAATATTTTAAAACCAAGAAATATATAATTTCTTGATTTACTATTAATTATAGAAAGATTTTATTTTTTTTGAAATATCAGTAATTACATTTTCTCTCCTCAACTAATATTTGGAGTATTTCATCTTTCCCTTATGAATATTTATTTTTGAATTTTGACTATTTATTTAATGCCCAATATTTCAAATTAATCTTTCATTCATCTTAGGAGATTTTGTTTATTTTCTTCTATATTCCTAGCTAAAAATCAATAATCTCTATTGAGATCTAAAATATATGTCAAATATATTAGAAAATATAAATATACTACATATACATTATTTGGTATGTCAGATGATATATTGTATAAATAGTCTTATTCATTCACTTCTAAAATATACCCCGATTTATTTATAAAAGAATAGAAGTGTAGAAAGCCCTTGGTTTAAGATTGTTTGGGCTGTTTGGTCTTATTAAATTGAAGTGGGGAGAAATTGGGCCTAAAGATGAGCCTAAAAAGTTTGGTGTTTGACCTAGTCAACTAGGTTAAAAAAAAAAGAAAAAAAAAAAGAAAAAAGAAAAGGTAATTGAAGTTTTCTTGTTCAGCCGCCAGACCTCCCCCGCCCTCCCTCACCCCCTCGTGCGTCTCTCTCCCGCACAGTATCTCTCTCTCTTCCAGCCATCTCTCCCTCACCCCAGTCTCGTACGCCAGCGCCGCCGCGACCTCCACACCGGACGACGACTGCCGCCGGTAAGTCTTCCGTCTCTTCCATTCGCTCTCTCTCTCTCTCTCCCTATCTACCTATCTCACGTTGTTCTCTCTCACTCTCTCCCTTTCGCAAATCCCCGCCGCCTGCCAGTCAGCACCACCGTCGCACGTCTCTGGTCGACGCCGCGGCGGCCGATTTTAGTTTTGGGTAAGAGTTTTGTAAGTTTTTGGGGGTATTTTTGTTGGGATGATTCTTGAATACCCACACACACTACAACAAATAACCCATTTTGTAGCATTTTGTTTTAGCATTTTTGAAAAACTGCTATAGAAATCCCGAAAAGAAATGCACCATAGTCTCCGGCTCAAAAGTTGCACTTCCAACGCTTTCCCCCGTTTCTCTTTTACATTTTTCAGACTCCTGCTATGTCTCTCTCGCAATTCTGTATCCCTCCACTTCCATTGTCCTTCTCTCAAGCCTTCAATCTTTTAGTTTCTCTGCCCATGACCACCCCAAGCTTCACTCTAGCAACCACGGGCAACGACAGATTCACCTGGTACATGGCGAGTCTGAGAATGTCGCATGTGGCGCTGCAATTTAAAATTAATAGGAGTAAGTGTCAGATATTGGGTATCGATTGTGGCAAGGAGAAGCTCTATAGACGTGCGGGTATGATTGGTTGTGAAGTTGGGTCCTTTCCTTCCTCCTACTTTGGCCTTCCTCTTGGAGGGAATCCAATAGCCATCTCTTTTGGGACTCTCCCATTGAGAAGACTGGGAAGAGGTTAGACCTTTTGAAGAAACGTTTTTCTCCTAAGTTGGTAGACTTACCCTGATCAGATCTGTGTTGAGTGGAATTCCCAATTCGATTTGCATGAGTATTGAAAAGCTTACGAGAGACTTTTTGTGGGGAACAGGTGGAGGTGGAGGAAGGGAAAGGGTCTCATTTGGTTAGCTGGGAAGTTGTTGGGAGACATGTGAACAGCTTGGAAATTAAAGGTTATGCAACAAAGCTCTGTTGGCTAAATGGCTTTGGCATTTTGCTCTTGAGTTCGTATCCTTGTGGCATTGGATTATTATAAGCATGGCCCCCACCCCTTTGAATGGGTGGCGAAAGGGTGTTAAAGGCATGCACCAGAATCTTTGGAAAGATACTTCATTTGAGCTCCTTTCTTTCTTCTATCCTGTTTGTCGTGTTGTGGGGGAAGGTAAAGAAACGTGGTTTTGGAAAGATCAGTGGGTGGGGAATAGAGCCCTCTCCATTGTGTTTCCTCGATTATATTATTTGTCATCTTTTAAAAATTGTCTAGTGACCAGTCTTTGGTTTCTTACTTTGGATGGGGAGCTTTGTGTCTTTTTCCTTTGGTTTCGTCGTCGGTTGTCCAATAGGGTAACAACAGTGCTACCTATCTTTTTTCTCTACTTGTTGAAGGTAGAGGAAGACTTGGATCACTTTCTTTGCGGGTGTCAATTTGCAAGGATTCTATGGAACTGCTTCTTTTAAGAATTTGATTTTGAGTTAGCTCGCCTAGGTGATGTTCGTGCGACGAACAAGGAGTTCCTCCTCCATCTACCTTTCAGAGAGAAAGGTCGTTTCTTGTGGTTTGCTTGGGTGTTTGCTCTATTGTGGGATCTTTGATGGGAGAGGAACAATAGAGTGTTTAGACATTTGGGCTTTGGTCTCAAAGACTTTTTATAATTATTCTCTAGGTAACATCTTACTTAGTTGGAAGCCCGTTCTTTAGTGGATTTTTGTGGACTTGGTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTTCCTAATAAAAATAGTTGTTTCCATGAAAAAATTAAATACAATGTTGAATAAGAGTCTAGTATTTCTTTTTGGACGCTATTTGGTACACTATAAACCAAATCTAGTTTTACTTTGTTTCTATTTTTGTGCATCACCTAATTCCTCTCTTCTGTTGCATTTCTTTTTGTTTTTTGACCGTCGATTGGTGCCGTAATTTTTCTCTAATTTTATTTGTAATGATTTTTCAAGATTGCTCTGTTTTTCATACCCCATCTATTTAATCATTATTGGGAAAAAAGTTCTCTTTGTTATTTACATCCTTCACAATTTCTTCAATTAAGGGTATGAGGTTGTTAATTTAACCTATGCAATTTGGTGACCTATGTAGGTATCAAAGAAGAGGAGTTTTTGAAACTGATTGCTGAAATACAGTTATCAATCATGGTCGATTGGGGTTAAGGTATATGTTCTTATTAACCTTGGTTACACGGGAAGAATTAATGGTAAAAGATTGTTTTCAAGAAAATAAGCTTTGTATACATACCTCATAAACCCTTAGGGGGTCTGTTTTGGGGGCCATAATGGAATAAGTTTGGATTGTAATGTAATCAAAAACCCATGTTTGGATTGAGCGTTTTGGGCTCAATTTGTAATATTGAACTCATTCCGTTCCAACAGTTTTTAACAAAACCATCTTTTCCATCGTTTTCACGTTCCACGATTCCGTTCCGTTCTCAATAGCCCACGCATTCCACACTGCACTGATTCTCAGTAATTCTGATTAGATTCTAGCCTCCCAAACAACCTCTTACATTCTTTGGTAGGTAAATAATTGTTTCATTCCAGTAGGTGCTTAAATGGAATGTTAGAATATCTTTTCAATGTATGTTTTGAAATTGTATATTATTTGAATATGGTCTTCTCTACCTTATTGCATAGGTTAAATTAACAAAAAAGTTGGTCTTCTCTTGAAATTATACGCTATGTGTATGTAATGATTGGTTGAATGTTTTTATTTAAGTTCTTTATCCTATGATTATTTCAAATAAGGAAAAAAATTGTTTGATGCTTTAACCATAAATTTTTTTATGAGCTGGGAAGTGAAACAAAACAAGGAGAAATTAAACTTAGTAATGTTTTTAGAGAGAGACCAAAAGATGGAGCTTTTGGAAAAGGAATCTCTTGAGTTTGTGAATAGAAGATAGATTTGATGTTGAAGTTTAATTCTATAAAGTTTGTTGCATTCTATTAGATATCCATATTTCAAACAAAATGTTGGATGTACTTATGTTTCAGATTCATGTTCAAGTTCATCTTTAGCTTAAACCATACTTAACGATTAGAATTTAGACACAAAATCTCATTTTTCTTAATCAAAGATGCAATTTTTTCTACACTTTTGAATCAAATAAGCTTGCAAGCGTTAATGATAAATTAGCTAAGAGAGTTTAGAAAATGAATCAATGTAAACTTCATGTTTGGTTAAATGTTATGAGTTTTAGTTGAGATATAACATTGCAAAATATGCAGAACTTTTTAAGCATTTGATCATTCGATCTAAAACTGATTCCTGTTATGTACTTTTGAACAAAAATGACTTTGTGGAGTTGAATAAGAGTCTGAAGCGAGAGTGTAACAAGAAGAACCACTTTATTGCATAAGTGCTTCAAAACTAGCTAATGATTTGAACAATTAAGTGTTGTATGATATTGAAGTATGAGTTGAGGATATAAGTTTTTTCCCCTTCAAATTCTATTTTTATTAGCAGTTAGATTAAGGTTGGTAAGCAAGCAAGAAAGGATAGGGTTCAAGAGCTTTTTCTATGTTACATAGATAGAAGCAAAGTAGTAGGATACTTGTTCGAATTGATATAGAATATAATACTAGGTTTTGAGCTCATTTTCCTCAAATTGCAAAGCTTGTAATTAACTTTTTTCATTTTCATCTTTCAATTATAGATAGTACCGTTTTGTAATTTGTATGTCAACATATTCTATAAATTCTCTCTTACTTTCTTGAATGAGGAGTTAAAAACAATCAAAGACATCTCACGTGGTATCTATGTGTAAAGTCAAGCCCTTTATACTCGTCATAATCAAAGATGATTTTGTTATTCCATCTCCAAATACATATTTCTTATATATTTCTTTTGATTAGTGATATCTTGGCACTAAAACTAGTATTACCATTCATATCATAAGAAAACATTTTCTGTCCATAAATTTGTACATTGAATTTTGATGATGGTTCCCTTTACTTTCCAGAACTGATGAATGGGAAGACCCTTAG

mRNA sequence

ATGACTTTTTTAGCTCCCTTAGCAAACGATGGATTAAGGGAAGAACCTACTGCTCAGAATGATGACAATGAGTTGTTAGATTTTTTAAATGATTTGCGAGAACCGATGAGAGAAATGGAATATGATGAAGATGAAGAAGAATTTGGGGATGAAATGCTGATAACATTGAACAAATTGGCAACGCAAGAGCAGATCAGACTATCATCACAAGATGGACTTGAACTAACACCGAAGGTAGTTATTTGTGAACGAGTTTTGGGGAAACGATCAAGCCACACTAAAGGTCTTGGATGGAACCCAAAACCCAATTTAGCTAAAGGTGGTGTATCTTTCTCACAGTTTGAGGAAGAGATTGAGAATAAGTATGAAAAGCTTGAGGCGGTGGTGACGACCTTCCAGGAGGAAAATCCCATGTTAAGGTCACAATTTTCGAATGTTCAAGATCAATTGGCTAAAATGGTGAGACAGTTAGGTGCGCAACAAAGGCAAGGAGATGACCCTCAAACAACTAGGAGCGACTTCTCCCGACGTGGAAACATCGACATTTTTATCGACGCAAAACTTTTCGTCCACATAAGCTTTGCCAACGAAATTTGGACTTTTGCCAGTGTTTTATTGCATCGGCAAAAGGGAACATTCGTTAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATGGACATAATGAGATCAACTGTTGAAATGCAGAACACACACATGGGTAGATTTGCATCGTGGCAAAAGGAAAAGTATGAGTTGGAGTTCGAGTGTCGAGAGGAAGTAGTGAACGCCATATATAACATTGATAGCTTGAATGAGGATGACCAAGTCGCCCTTATTGACCTCCTTGTCACATACATTCAGAAGACAAATTGCTTCCTTGCAGTATCAGAACATGCAAGGAAGAGTGGCATCATTTTCGTATATGATCATGTCTTCGAGATTTTTAACGTTAATTTTGCAACATCTCAAGCTTTACCGCCAGACCTCCCCCGCCCTCCCTCACCCCCTCGTGCGTCTCTCTCCCGCACAGTATCTCTCTCTCTTCCAGCCATCTCTCCCTCACCCCAGTCTCGTACGCCAGCGCCGCCGCGACCTCCACACCGGACGACGACTGCCGCCGTCAGCACCACCGTCGCACGTCTCTGGTCGACGCCGCGGCGGCCGATTTTAGTTTTGGGTAAGAGTTTTACTCCTGCTATGTCTCTCTCGCAATTCTGTATCCCTCCACTTCCATTGTCCTTCTCTCAAGCCTTCAATCTTTTAGTTTCTCTGCCCATGACCACCCCAAGCTTCACTCTAGCAACCACGGGCAACGACAGATTCACCTGGTACATGGCGAGTCTGAGAATGTCGCATGTGGCGCTGCAATTTAAAATTAATAGGAGTAAGTGTCAGATATTGGGTATCGATTGTGGCAAGGAGAAGCTCTATAGACGTGCGGGTATGATTGGTTGTGAAGTTGGGTCCTTTCCTTCCTCCTACTTTGGCCTTCCTCTTGGAGGGAATCCAATAGCCATCTCTTTTGGGACTCTCCCATTGAGAAGACTGGGAAGAGTTATCAATCATGGTCGATTGGGGTTAAGAACTGATGAATGGGAAGACCCTTAG

Coding sequence (CDS)

ATGACTTTTTTAGCTCCCTTAGCAAACGATGGATTAAGGGAAGAACCTACTGCTCAGAATGATGACAATGAGTTGTTAGATTTTTTAAATGATTTGCGAGAACCGATGAGAGAAATGGAATATGATGAAGATGAAGAAGAATTTGGGGATGAAATGCTGATAACATTGAACAAATTGGCAACGCAAGAGCAGATCAGACTATCATCACAAGATGGACTTGAACTAACACCGAAGGTAGTTATTTGTGAACGAGTTTTGGGGAAACGATCAAGCCACACTAAAGGTCTTGGATGGAACCCAAAACCCAATTTAGCTAAAGGTGGTGTATCTTTCTCACAGTTTGAGGAAGAGATTGAGAATAAGTATGAAAAGCTTGAGGCGGTGGTGACGACCTTCCAGGAGGAAAATCCCATGTTAAGGTCACAATTTTCGAATGTTCAAGATCAATTGGCTAAAATGGTGAGACAGTTAGGTGCGCAACAAAGGCAAGGAGATGACCCTCAAACAACTAGGAGCGACTTCTCCCGACGTGGAAACATCGACATTTTTATCGACGCAAAACTTTTCGTCCACATAAGCTTTGCCAACGAAATTTGGACTTTTGCCAGTGTTTTATTGCATCGGCAAAAGGGAACATTCGTTAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATGGACATAATGAGATCAACTGTTGAAATGCAGAACACACACATGGGTAGATTTGCATCGTGGCAAAAGGAAAAGTATGAGTTGGAGTTCGAGTGTCGAGAGGAAGTAGTGAACGCCATATATAACATTGATAGCTTGAATGAGGATGACCAAGTCGCCCTTATTGACCTCCTTGTCACATACATTCAGAAGACAAATTGCTTCCTTGCAGTATCAGAACATGCAAGGAAGAGTGGCATCATTTTCGTATATGATCATGTCTTCGAGATTTTTAACGTTAATTTTGCAACATCTCAAGCTTTACCGCCAGACCTCCCCCGCCCTCCCTCACCCCCTCGTGCGTCTCTCTCCCGCACAGTATCTCTCTCTCTTCCAGCCATCTCTCCCTCACCCCAGTCTCGTACGCCAGCGCCGCCGCGACCTCCACACCGGACGACGACTGCCGCCGTCAGCACCACCGTCGCACGTCTCTGGTCGACGCCGCGGCGGCCGATTTTAGTTTTGGGTAAGAGTTTTACTCCTGCTATGTCTCTCTCGCAATTCTGTATCCCTCCACTTCCATTGTCCTTCTCTCAAGCCTTCAATCTTTTAGTTTCTCTGCCCATGACCACCCCAAGCTTCACTCTAGCAACCACGGGCAACGACAGATTCACCTGGTACATGGCGAGTCTGAGAATGTCGCATGTGGCGCTGCAATTTAAAATTAATAGGAGTAAGTGTCAGATATTGGGTATCGATTGTGGCAAGGAGAAGCTCTATAGACGTGCGGGTATGATTGGTTGTGAAGTTGGGTCCTTTCCTTCCTCCTACTTTGGCCTTCCTCTTGGAGGGAATCCAATAGCCATCTCTTTTGGGACTCTCCCATTGAGAAGACTGGGAAGAGTTATCAATCATGGTCGATTGGGGTTAAGAACTGATGAATGGGAAGACCCTTAG

Protein sequence

MTFLAPLANDGLREEPTAQNDDNELLDFLNDLREPMREMEYDEDEEEFGDEMLITLNKLATQEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGGVSFSQFEEEIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQLGAQQRQGDDPQTTRSDFSRRGNIDIFIDAKLFVHISFANEIWTFASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARKSGIIFVYDHVFEIFNVNFATSQALPPDLPRPPSPPRASLSRTVSLSLPAISPSPQSRTPAPPRPPHRTTTAAVSTTVARLWSTPRRPILVLGKSFTPAMSLSQFCIPPLPLSFSQAFNLLVSLPMTTPSFTLATTGNDRFTWYMASLRMSHVALQFKINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISFGTLPLRRLGRVINHGRLGLRTDEWEDP
Homology
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BLAST of Clc09G18150 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-32
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0 

Query: 202 ASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEV 261
           ASVL    +G+  KRKRPSFQAEM+DIMRSTVEMQ+THMGR ASWQKEKYELEF  R+EV
Sbjct: 168 ASVLAESSRGS--KRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFGRRKEV 227

Query: 262 VNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARK 303
           VNAIY+ID L+EDDQV  IDLLVT IQKT+CFLAV EHARK
Sbjct: 228 VNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCFLAVPEHARK 266

[Close]
BLAST of Clc09G18150 vs. NCBI nr
Match: XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 2.9e-27
Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = 0 

Query: 215 KRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNED 274
           KRKR SFQ EM+DIMRSTVEM +THMGR ASWQK+KYELEF  ++EVVNAIYNID L+ED
Sbjct: 159 KRKRSSFQVEMIDIMRSTVEMHSTHMGRLASWQKKKYELEFGRQKEVVNAIYNIDGLDED 218

Query: 275 DQVALIDLLVTYIQKTNCFLAVSEHARK 303
            QV LIDL+VT IQKT+CFLAV EHA K
Sbjct: 219 TQVTLIDLVVTDIQKTDCFLAVPEHAWK 246

[Close]
BLAST of Clc09G18150 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 8.3e-27
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 202 ASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEV 261
           ASV     +G+  KRKR SFQ EM+DI++STVEMQ+THMGR ASWQ EKYELE    +EV
Sbjct: 168 ASVPTESSRGS--KRKRSSFQVEMIDIVKSTVEMQSTHMGRLASWQNEKYELEL---KEV 227

Query: 262 VNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARK 303
           VNAIYNID L E+DQV LIDL+VT IQKT+CFLAV EHARK
Sbjct: 228 VNAIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAVPEHARK 263

[Close]
BLAST of Clc09G18150 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-21
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 236 QNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLA 295
           ++THMGR ASWQKEKYELEF  R+EVVNAIYNID L+EDDQV LIDLLVT IQKTNCFLA
Sbjct: 209 ESTHMGRLASWQKEKYELEFGRRKEVVNAIYNIDGLDEDDQVTLIDLLVTDIQKTNCFLA 268

Query: 296 VSEHARK 303
           V EHARK
Sbjct: 269 VPEHARK 275

[Close]
BLAST of Clc09G18150 vs. NCBI nr
Match: XP_038899910.1 (uncharacterized protein LOC120087100 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-19
Identity = 81/200 (40.50%), Postives = 114/200 (57.00%), Query Frame = 0 

Query: 95  GLGWNPK---------------PNLAKG--GVSFSQFEEEIENKYEKLEAVVTTFQEENP 154
           G GWN +               PN AKG    SF  + +++   + K  AV  + ++   
Sbjct: 6   GFGWNEEFKCVQVEKEIFNRSHPN-AKGMWNKSFPHY-DDLSTVFGKDRAVGQSSEDPYV 65

Query: 155 MLRSQFSNVQDQLAKMVRQLGAQQRQGDDPQTTRSDFSRRGNIDIFIDAKLFVHISFANE 214
           M ++ F   +D++     +LG+Q  +  + + T S  ++       ID +       A +
Sbjct: 66  MAKNAFREFEDEI-----RLGSQDCRTAEVRQTESPLNQDE-----IDEEP------AEQ 125

Query: 215 IWTFASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFEC 274
               ASV +   +G+  KRKRPSFQAEM+DIMRSTVEMQ+THMGR ASWQKEKYELEFE 
Sbjct: 126 STGRASVPVETSQGS--KRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFEH 185

Query: 275 REEVVNAIYNIDSLNEDDQV 278
            +EVVNAIY+ID L+EDD++
Sbjct: 186 WKEVVNAIYSIDGLDEDDRL 185

[Close]
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match: A0A5A7UKB8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001590 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-11
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 59  LATQEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGGVSFSQFEEEI 118
           +A QE+IR SS+DG + TPK +I E+VL KRS HTKGLGW   PN+A    S   FE++I
Sbjct: 240 VAMQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVAT-CTSTHVFEKDI 299

Query: 119 ENKYEKLEAVVTTFQEEN 137
            +KYEKL+  V   +EEN
Sbjct: 300 GDKYEKLQTKVINLKEEN 316

[Close]
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match: M5XUF8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-06
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 459  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISF 510
            KIN+SKC ++GI+     L   AG  GCEVG++P SY GLPLGGNP AI F
Sbjct: 971  KINKSKCSLVGINLDDGLLNELAGAWGCEVGAWPMSYLGLPLGGNPRAIKF 1021

[Close]
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match: M5WJI4 (zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020784mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-06
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 459 KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISF 510
           KIN+SKC ++GI+     L   AG  GCEVG++P SY GLPLGGNP AI F
Sbjct: 2   KINKSKCSLVGINLDDGLLNELAGAWGCEVGAWPMSYLGLPLGGNPRAIKF 52

[Close]
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match: A0A5H2XP17 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_575S000200 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-06
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 459 KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISFGTLPLRRLG 518
           KIN++K  ILGI+   E L   AG  GCEVG +P  Y GLPLGGNP A++F    L ++ 
Sbjct: 121 KINKAKSCILGINFSIETLNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLDKVE 180

Query: 519 RVINHGR 526
           + + +GR
Sbjct: 181 KRLQNGR 187

[Close]
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-06
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 62  QEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGG-----VSFSQFEE 121
           Q  I+  +Q+G E   +   C +VLG R  H KGLG+ P+P L K G      S + +E+
Sbjct: 158 QNLIKAPTQEGCEPVTQPEACRKVLGDRPDHVKGLGYGPQPTLCKRGSSSNVTSSTLYEK 217

Query: 122 EIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQLGAQQRQGDDP 168
           E+E K E +E  +   + EN  L+   S  +D+  ++ R +    RQGD P
Sbjct: 218 ELEKKVEDMEVEMREMKTENQRLKESVSTWEDRWNEISRFMAG--RQGDGP 266

The following BLAST results are available for this feature:
BLAST of Clc09G18150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896380.11.7e-3278.22uncharacterized protein LOC120084641 [Benincasa hispida][more]
XP_038877407.12.9e-2777.27uncharacterized protein LOC120069696 [Benincasa hispida][more]
XP_038887234.18.3e-2770.30uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_038895773.14.0e-2183.58uncharacterized protein LOC120083935 [Benincasa hispida][more]
XP_038899910.14.9e-1940.50uncharacterized protein LOC120087100 [Benincasa hispida][more]
BLAST of Clc09G18150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UKB84.0e-1153.85DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
M5XUF81.0e-0658.82Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
M5WJI41.0e-0658.82zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020784mg ... [more]
A0A5H2XP171.3e-0647.76TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_575S000200 PE=4 SV=1[more]
A0A6J1DUH32.3e-0634.23uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Clc09G18150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G18150.1Clc09G18150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016779 nucleotidyltransferase activity