Clc09G18115 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G18115
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA polymerase sigma factor
LocationClcChr09: 30152479 .. 30160670 (-)
RNA-Seq ExpressionClc09G18115
SyntenyClc09G18115
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTGGACAATGTGAAAGCTAGACTTCAGTCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCAGAAGCTCTAGGGCTTACTTGTCAAGGCTTATCGTCACAGTTTCACTCCTTTTGGATCGGTCGTGAAAAGCTGATTAATGCAAATTTGCAAATCGTAGTTCACATCGCTAAATAATATCAGGGTCGTGATCTCAGCCTTCCAAAACTAATTGCAGGACAGAAGCTTGGGACTTATGAACGGTGTAGTAAAATTCAAACCGCAAGCTGGTTGCCGCTTTGCCACTTATGCTTATTGATGGATTAGGCAATCAATTAGGAAGGTGATATTCGAACACTCTAGAACAATTCGTTTACCAGAAAATGCATATGGCCTCCTTGGAAAGGTGACAGAGGCCAAGAATTAATGCGTCGCTATAATTTTTTACTTCTTCGAAGTTTTTCCCTAGTTGGTTCTCCTCATGGAAGTGAACTGCTGTATTGGTAATACATTTTTCTGTATTAGAAGAGACAAGGATGCAATTCTGGTAGAAGATACAAAATTTAGACAAATAATCTCCCTTTCTTTCTCGAATCTAAGCTGGTTTCAGAGTTACATCAACTGCCAGTAATTTTGAAATTCCTTAAGGACAGGGACTCTTCTGGAACACTTTGTTTAACCAAGCTACGGTCTCAAAATTGATGGGGTTTTGAATATACAATTTGGCCTTCAATGAGGGAAGAAAGCAGTTTCATTTTCCGGCTAGCCCCAAGAAGAGAGGTTGGCTTGTTTTTTGGGAAATGTTAAGAGATTTTTCATTACTTCAAGCAAAAAAAGAATCTGCAATGATGGACCCTTCCAAACAGCCAGTCAGCAGAGATAGCCTGATTTTGGAAGTTGATCGGAAGAATTCCAGAAGTTATGTTGAAGTAGTGAAGAAGAAGTTGTCAACCGGTCAGAGTACTGAACACCTTTAATTTCTCATCCTCGAACAGATCAAGTTTTCTCATCTACATGGGTCAGAAAAGAGAAGGAAGCAGTTGAAGTAGATTTAACAAGATTTATTTAATCTCAAGATTCGGTGTGCATCATTCGAAATTCATAAGGCTTTGGAGCAATATTTTGGAGAAGCTATAATAGTTAATCCCTTTTTGGGGGATAAGGCGTTGCTGATGTTTTCAAAAGACGGGGCTGGACATTTATTTGATGATAAGTGGAAACTCTTTTTTTTTTAAAAAAAACGATTCATTGATATAATGAAAAAACCCAAAAACTCATAGTACAAAGAAATAAGTAAGGAAAGAAAACAACCAAGAAAACAATTTAACAAGAACAAAAATGAAAAGACTAAACCTTGGAAACAAAACAGAGTAAAATATAAGCACCCACAGAACAAAACTTCCAAAACGAACAGAATAGTTGGCAAAGAGCGAAACTTAAGCCAAGAGTGGCAAAGAACTTAGAAAGCTGATGAAGGCAGATGAAGCTTGAAACTAAAAACATAACCAAAATGACTAAAAAGATGACAACGCAGAAGCTTCCGAGCCAGACATAGTTCTTAAACAACCAAGGACAAAAGACTTGGAAAAAAAGCAGCAACGGATTTGGACAAACATTCAGAATTTTCTGAAAGCACGACCAACCAGGCCCTCCAATCTAAAATTTCTGAAAGATTTGATAAGACCACTCGAACTTGACTTTAACTAGAGAATAAAATGTGGAGTGACAAGCAAAACCATATTAAAAACCTTCAAAACAACTGATAAACACCAACCAATTAGGGGTGCCTCCAAGCCTCTTGTGAACTACTGCAGGATCTTTAATGATCTTTAACGAAGACTAAACAAAAACAGCCCCAATAAAGCACAGACATCTAAACACAAAACTCAACCAAGACCGATACCACAAGCATCAATTATAGAATGAAGATGTTGTGGAACTTCACCCTTTTCAAGAGGAGAAAATAAAAAGTCTTCAGCCTTACCAAACATATGAGCTTCCTTTGATTCAAATAAATGACAAATGTCAATACCACACCCATCAACTGAATCTCGTAATTCCTCTGTTTCAGAATTTTCGACTCTTCACTGCTAGCACTTGTTAATGAAACCCCATCCAATTCCCCATCTGAATCTTGCTTTTTGTGATGATAGTTGCTTGAAAAACTAGCCGGGAGTCCTCACAAAATTTACGTTTGAGCCAAGGATTTTAAAATCCAATTGAGAAAAAGGAGGATGAGTCGAAGAAGAGTTGTCAAGCCTTTCAGGTATAAGCCCTGGGATTTGAACTTTGACGCAACATTCCTCAAGCAAATCCGAGTTCACAATCGTAGACCAAGAGTTTAGAAACGAAGTCTTTTTCCTGACAAAATGCTTGGGAAAAGGCTTGAGTAATTTTGGATGCTTTTTTCTCCAATTTCAATTGATGAGAATCATGCGCTAAGGGAGAAGAATCAAACTTACTTTTGCAATGGAACACTAGAGATGGGAAAACTGATCGAAGAGGGTTGCCGTCTCTTGGACTTTCAAGAGAGAGAATATTTGCGCAAGCATTTACTTCTTTTTCGATGAAAAAGGAACGGACAACTTTATCCTTTAAAAGTGAGACTTCATTGGTTGGGGAAATGAGCAGGGTTGAAACAACTTCATGGGGCTGAAAATCTTGGGAATTTGAAGTTCTTTCGAAGGGATATCGAGGGTCTTTGTTTTCTTAACAGTCGTATCCCTAACGACTTTCTCACTCTTCAATAAAAGAAACTTTGTGTTCATATCAAACACAGAAGGATTACCGCTTGTCTTCTCTAGCTACGGTGGAATGGAATATAGTTTGATTGAAGCCAATTGACCAACTTCCGTTGGCTTTTGCAACGAGGAATTTCTCCCCTTTATTCTTGAAGCTAATAGATTTCTTGAAAAATTTAAGGACGACTGAGATGGTAACAAAAAATCTAAATCAGGATCTAAAGATTCAAACTCTAATCCTTCATCCTATAAAACTTGATTCAAACGGACTAAATAAATTGGATTAGTAAAATCCTTGACAAATAAGTCACCTTTCACCATTGAGAGAGGATCAATTAATTCAAGGTCTCAAAAATTCAGAAAAATAGAACCACACTTTTCATCTGCAATTTCTATGGTTGATGGCTTGAAACAACATACATTCATTTTAATTTGAATCTTAGCTTCAGAAACGTTACGGAGGTTCAAAGTATCCAAACAATATCTTCCTAACCTCCAAAATAGGCACCAATAGCTTCGAAAGTTTGCCTACACCAATAGTCTTACGAGAGATTCTTAATTGGAATCCATCCTCCATAACCTTTCAAATATAATGGTCGGCTAAGCACAAACTTGTTCCACTTCACGAACTTTAGATAAAACGATCCATAAATCTGCCATTACACGGAGTCTCAATCACATCCTCAAGAGTTCCGTGGTCTAGTTTAATTAAGGCATTTTCCCCGAACAGAGGATTGACAATGACATCAAATTGGAAGTATTCTTTTAACGTTTTAGCTATTTTTGACCCGTCATTGAACTCAAACAATCTGGAAACTATCCACAAATTGCAAAAATCTTCTTGAAAACATCAGAATTAAAGTAGAAGAAAACCAAAAGAACTTGAGGATTAGGTGGTGCACTCGAGCATCTCAACCAGGTTGACACCCCATAGCACATCATCATATCTAGGAATAATACAAGACAGAAACTGAAAAAGCAACTTCTAGAATGATACAATCCTTCAAGAAGTTGTTACAAGGATCAACAAGACAATTAAAATGAAAATAAACTATGCAGCAACATCATTACAAAGAATAAGAATGTTACACTGGGAAAATAAATGTCATCTAGTTGAGACTGAGATCTTGGATGGAGAAGTCTTCAAAAGCAGACAGCTCTAAGAAGATGCATTTAAACAGGCTATATCAAACCGAACTCTCCAATCTGCTTGTTTTTCATGAAGAACTCGTTGATTCCTCTCAAACCGAACTTCATTTAACACAACTGTGACCGCATTTGACTATAGAATCGATGCCTTGGAGTTCATGGCTTGCCCTACCAGAATCTGCATAGTACTTTCTCGAAAAATGTTTCCAAAAACCCAACTAATGTTAAATATTGCAAACAATGGGTCCCAACAGTTCCTAGAGAATGAACAAAGAAAGAATAGGTGTTGTAGATCCTCAATTATAGCTAGACAGAGAGGGTAGATTGAGGGAGAAAGATAGCGTTGGGGCAATTTCTGTTGCATAACCGAGGAGCAATCCACTTTAACAAAAGCAGTATTCAAACAATGATATTCACTCTTCTAGGACTTCTAGTCATCCATAAAGCTTTGCGCACCTATTTATCTAATGGGGAAGCCACTGATAAATGCCTTGAAAGGGATTTTACCGAGAATGACCCACTTGCTTCTAAAGTCCAGACGAGCCTATCCAAATTTTCATTCACACTTTTGGAAGAAATCAATTCAAGGAGTGATTGAAAATGCACAATCTCTTCTTCTTTTAATAATCTTCGAAAGGATAATGACCAAGAGGAGGATGAGGAATCCCAATGATCTTGAACTAAGCCACTTGGCCTATTTGCTATTCTAAACAGAGTTGGGAAGCTTGCTTTTAGAGGTAATTGGCTTGTCCAAGGGTCGGTCCAAAATCCAATCTGGCACCCGTTTCCAAGCTTGAAACTAGCTAATGTGCTCAGCTTTAGCCAAGTGCGAGAGATGCTTATCCATGAACTTTGAAGGCTAAGGTTTGTTTTACCGGCAGTGTGCCAATTGTATCTTTCTTTCCCATGAATACTACTAACAGCTTGCTGCCATAACACATTTTCCTCTTTCAAGAATCTCCACCCCCATTAGGCTTAGGGGGCAAGGTTTTTGACTTTTAAATTGCCTAATCCGAGTTCCCCATCATTTTGTGAGCAAGTCACAAATTCCTATTTGACTAAGTGATTCAACTTTCCTCCTTTATTTCCTTCCCATAAGAACATTCTCATAATCCACTCCAATTTGGCAATTACTTTTTCAGGCATGAGAAATACAGACATAATAAGTGAAGAGATTGGATAGAACTGACTTACAAAGTGTGGCTCGACCTCCTCTTGATAAATTATATGCTCTCCATTTGTCTAGCTTCCTTTGAACTTTATCAATAATCGGCTGCCAAAATGTAACTAGTTTTGGATAACTTCCCAATGGTAGACCAAGGAAGAAATAAGGTAATTATTCTATTTTACAATATAACCGAGTGGCCATTGAAACAAGCTTATCTTCTTCCATATTAATGTCACAAGGAGCTGATTTCTCCCAACTCACCTTTTGCCCTGAAATCCATTTAAATAATTCAACTGTTCTCCGCAAGGTAATTAGCATAGAGTCATCATCCACAAACTGTAGTATAGAAATATGAATGTTATCCTTTCCCACCATAAGAACTTCAAAGATCCTTGTTCATAAATCTTCATGATGAGCGCAATCAAGACCTCGCTAACAAGAGGAATAGAAAGGGGGATAGAGATCCCCTTGTCCAAGTCCTCTAGAAACAAGGATTCTTCCACAGGGTCAGCCATTTATGAAAATTGAATATCTTGGATTTTTAACACAACCCAAAATCCAAAAAATCCATTCAGGATGAAAAATTTTACAAATTAAAATCCTCTCCAAGAATTCTCAATCAACTCTATTGAAGGCCTTCTCCAAATCCAACTTCAATATCCAACCCTTCTTCTTTTTGGATCTATATTCTTCCACTACCTCGTTTGCAATGAGGATCGGGTCTAAAATTTGTCTTCCCCTTATGAAAGCACTTTGAGTGGGAGCAATGATGGAAGCGTTACTTTCTTTAAGCGTTCTGCAAGAACCTTGGCCACAACCTTATACACTAAGGTGGTTAAACTGATTGGTCTAAAATCATTTACTCGTATTGTATCCTTTTTTTTTTTGTATTAAACAAATAAACTTCTCCTTGATGCAAGCATTTAATCTCTCATTTGAAGAAAATTGCTCAAATAGCATCAAGAAGTCTGACCCGAATGAACTCCAATATTTAATTAAGAATTCGATCGTAAAGCCATCTAGTCCTGAAGCTTTATTCTTGCCAAGTGCTTCTAAGGCTTGGAAAATTTCCTCTGTGGTGAAATTGGCAGTCAATAATGGATTTTGTTCCTTAGAAACCTTGGTCTAGCCAAAGTTGAGGGGTAAGGATCTAAATCTAAGGGATTTTAGGTTAAATAGAGGAGTAGAAGCCCAACACAATACTTTCAATTTCACTAAATTTTTTGGAAGGAACACCCTGCTCATTAATCAGTGTTGTAATTAAGTTCCTCCTCTTCTTTGCTGCAAGAAAACGATGGAAAAAGCTAGAATTTTCATCTCCCAGCCTTAGCCAATTTAATTTACTTTACTATATAAGTCTTCTTTCTTCCATTTGATACATCTGTAGGAGTTCTGCTTTCAAAGAGGTTCTCAAACTTAACTCTTTTGAATCTGTCTCTTGATTCTCAGATTGTATGTCAAGTTTCTCTATTTCCTCTAGTAATTCCTCCTCCCTTTTTTTCTTAGAAGCTTATGAGTCTGTGTGCCAAGCTTTAATTGATTATTTGACCTTTCTAAGCCTTGAATCTATAATGAAACCTGCCCAACCTCGAAAGTTTCCATTTGTTAAGGATCGTTCGATTAATTGACAACAAACATTCTCTGAAAGCCAACTATTGCAGAAACGAAAAGGAGAAGGACCCCAAGAAAAAGAACCAACTTCGTGGGCTTGCTTTGAAACTCTAGAGTTTTAAAACATATCATCCCAAGCCTTTGTAATGAGAAATTTGTCAATAAGAGATCTTGAAGTTGAGTTTCCTTCCCTTGACCAAGTGAATCTACCATTTGATAAAGGAATTTCCATCAATTGATTGTCAATGATAAATTTGTTGGATTTTCTCATGCCTCGTGTGACTCTGCCAATTGGAATTCATTCTTGAGGCCATCTTGTAATGTTGAAATCTCCCCCAAGGCACCATGGTTCAATGCAATAATCTAGCAAAGAAGATAGCTCTTTCCAAATATATCTTCGTTCTCTATAATCATTAGGGTCATACACGTTTGTAATCCAAATTTTTTTTTTGCAAATAATCATACATTTGGCCGATAAGGAGTAACCACCTTTTAATACTTCAGTTACCATTAGCTTGCTTTCATCCCAGATAGTCAAAATCCCGCCTGATTTGCCAATTGATTCCACAAATGCCCAGCCAATATCTTTTGAGCTCCATAACGATTTAATAAATGCAGCATCAAACTCATCCTTCTTAGATTCTTGGATTGATACCAAATCCGGGTCCTGTTTCTTCAAAAAATGCTTAAGGGTCAGTTGTTTAGAACTATCACCAAGGCCTCTGATATTGCATGTGATGATCTTCATAGTAGAGTATTAATGAGGACTAGCTACTAATCAGCCCAAGATAAGACCACAATCATCAATAATTGTGGGTAAATGAGTGGGAATGACAGAACTATTTAACGGCGGGAATTCGTCCTTGAGAAAATCCAGGTTGTCTTTATCCTCATCTTATTTGTGAAATAACTTGCCAATATCTACTTCAACATTGTCAATTTGGACAAGAACTTCTTTAGATTCTTCTATGCCCGACTCTTGGAATTCTTCACTGCTCACACTTGCTGCTAAACCCAAATCAAAATCTTGGTTGTCTGACCGAGATATAATTTTGGGATGAAGGTTTGAATTCGATAAGGTAACAACTGTGTTTTGAAAATGAGGAGAGGGATGAAAAGGTACCGACGATATTTTGAAAGCTTCTGGTGCATGGGCTCTTACACAGCTTTCTTCCAAGAGATCTGAGTTGACAAATGACGAAAGTGATTTGAGTAAGGATGAATTCTTTCTGAAATTCTTCCCGGAAGAATGCTTGGGATATGGTTTCAGTAATCTTGATCTAAGCCTTGAACTCTTAGCTGTCAAATTAGAAGCACGGGAGAACTTAGACTTAATTTTTGCTTTGGGATTAGGTAATCGTGTTAGTGCAATTTCATCGAAATTCTCCAAGTTAATCACTAAGGGAACCTCTGACTTTTCATTATCTGGGGAGAGGAATGCCTCTCTTGCAATGGCAGAGAAGACGAAGGGCCAGAAGAATATGAACCGTTGTCTAAATATCTTTCTTTTAATAAAGCCTTTTGAATTGTCTTAA

mRNA sequence

ATGATACTGGACAATGTGAAAGCTAGACTTCAGTCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCAGAAGCTCTAGGGCTTACTTGTCAAGGCTTATCGTCACAGTTTCACTCCTTTTGGATCGGTCGTGAAAAGCTGATTAATGCAAATTTGCAAATCCTTTCTTCCAAGAGATCTGAGTTGACAAATGACGAAAGTGATTTGAGTAAGGATGAATTCTTTCTGAAATTCTTCCCGGAAGAATGCTTGGGATATGGTTTCAGTAATCTTGATCTAAGCCTTGAACTCTTAGCTGTCAAATTAGAAGCACGGGAGAACTTAGACTTAATTTTTGCTTTGGGATTAGGTAATCGTGTTAGTGCAATTTCATCGAAATTCTCCAAGTTAATCACTAAGGGAACCTCTGACTTTTCATTATCTGGGGAGAGGAATGCCTCTCTTGCAATGGCAGAGAAGACGAAGGGCCAGAAGAATATGAACCGTTGTCTAAATATCTTTCTTTTAATAAAGCCTTTTGAATTGTCTTAA

Coding sequence (CDS)

ATGATACTGGACAATGTGAAAGCTAGACTTCAGTCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCAGAAGCTCTAGGGCTTACTTGTCAAGGCTTATCGTCACAGTTTCACTCCTTTTGGATCGGTCGTGAAAAGCTGATTAATGCAAATTTGCAAATCCTTTCTTCCAAGAGATCTGAGTTGACAAATGACGAAAGTGATTTGAGTAAGGATGAATTCTTTCTGAAATTCTTCCCGGAAGAATGCTTGGGATATGGTTTCAGTAATCTTGATCTAAGCCTTGAACTCTTAGCTGTCAAATTAGAAGCACGGGAGAACTTAGACTTAATTTTTGCTTTGGGATTAGGTAATCGTGTTAGTGCAATTTCATCGAAATTCTCCAAGTTAATCACTAAGGGAACCTCTGACTTTTCATTATCTGGGGAGAGGAATGCCTCTCTTGCAATGGCAGAGAAGACGAAGGGCCAGAAGAATATGAACCGTTGTCTAAATATCTTTCTTTTAATAAAGCCTTTTGAATTGTCTTAA

Protein sequence

MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQILSSKRSELTNDESDLSKDEFFLKFFPEECLGYGFSNLDLSLELLAVKLEARENLDLIFALGLGNRVSAISSKFSKLITKGTSDFSLSGERNASLAMAEKTKGQKNMNRCLNIFLLIKPFELS
Homology
[Close]
BLAST of Clc09G18115 vs. NCBI nr
Match: XP_023543698.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Sbjct: 545 MILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMV 600

[Close]
BLAST of Clc09G18115 vs. NCBI nr
Match: KAG7034557.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Sbjct: 233 MILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMV 288

[Close]
BLAST of Clc09G18115 vs. NCBI nr
Match: XP_022978801.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Sbjct: 544 MILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMV 599

[Close]
BLAST of Clc09G18115 vs. NCBI nr
Match: XP_022926086.1 (RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Sbjct: 544 MILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMV 599

[Close]
BLAST of Clc09G18115 vs. NCBI nr
Match: XP_038882876.1 (RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVKARLQSQFGREPTLVEWAEALGLTCQ L SQ  SF I REKLINANL+++
Sbjct: 273 MILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLQSFRISREKLINANLRMV 328

[Close]
BLAST of Clc09G18115 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 3   LDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           L+ VK +L+SQ G EPT+ EWAEA+G++   L S  H     REKLI ANL+++
Sbjct: 266 LEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLV 319

[Close]
BLAST of Clc09G18115 vs. ExPASy TrEMBL
Match: A0A6J1IP18 (RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478657 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Sbjct: 544 MILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMV 599

[Close]
BLAST of Clc09G18115 vs. ExPASy TrEMBL
Match: A0A6J1EDW3 (RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433307 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Sbjct: 544 MILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMV 599

[Close]
BLAST of Clc09G18115 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVKA+LQSQFGREPTLVEWAEALG+TCQ L SQ HSF   REKLINANL+++
Sbjct: 550 MILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMV 605

[Close]
BLAST of Clc09G18115 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVKA+LQSQFGREPTLVEWAEALG+TCQ L SQ HSF   REKLINANL+++
Sbjct: 550 MILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMV 605

[Close]
BLAST of Clc09G18115 vs. ExPASy TrEMBL
Match: A0A5D3CAF4 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00200 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           MILDNVKA+LQSQFGREPTLVEWAEALG+TCQ L SQ HSF   REKLINANL+++
Sbjct: 235 MILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMV 290

[Close]
BLAST of Clc09G18115 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 3   LDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL 57
           L+ VK +L+SQ G EPT+ EWAEA+G++   L S  H     REKLI ANL+++
Sbjct: 266 LEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLV 319

The following BLAST results are available for this feature:
BLAST of Clc09G18115 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543698.11.3e-1682.14RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG7034557.11.3e-1682.14RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. a... [more]
XP_022978801.11.3e-1682.14RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima][more]
XP_022926086.11.3e-1682.14RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata][more]
XP_038882876.12.8e-1683.93RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida][more]
BLAST of Clc09G18115 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LD951.9e-0750.00RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Clc09G18115 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IP186.2e-1782.14RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EDW36.2e-1782.14RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=36... [more]
A0A1S4E3S82.4e-1680.36RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36... [more]
A0A5A7V8932.4e-1680.36RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3CAF42.4e-1680.36RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Clc09G18115 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G36990.11.4e-0850.00RNApolymerase sigma-subunit F [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 3..56
NoneNo IPR availablePANTHERPTHR30603:SF50RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATEDcoord: 3..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G18115.1Clc09G18115.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071483 cellular response to blue light
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:2000142 regulation of DNA-templated transcription, initiation
biological_process GO:0090351 seedling development
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0016987 sigma factor activity