Clc09G17170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G17170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ULP_PROTEASE domain-containing protein
Location	ClcChr09: 27602401 .. 27604080 (+)
RNA-Seq Expression	Clc09G17170
Synteny	Clc09G17170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTAGAAAGTGAGGAGGACTTGGAACTTCATTTGGATGATGTTACAATTGGTGTGAATAATGAGAATATGCATGATGTGACAAAAATTAGGAGTATAGGAGAGAGAAGGTTGGTTGAATATAATAATGATGGAGTGTCGATTGGAGACATTGGATATAAGTTAAAATCTTTTATTGGATAGCACATAAGGCAATAGAGAAGAAAGCTATTAGTGTACCATTGATATCACATGAGGCATAGAAGAACGAAACTCAAGATTTAAAATCCTTGAAGGTGAATTGTAATAGTCCCACGTTTTGTCTTGTTTACATTTACTCATGAAATTATATTTTTATTTGGTATAGGAAAAAACTTCAAAGACGATGGCGAAGGAGAAGGAAGCTATTAATGCACCATCCAATTTATCAATATATCTGAAGTCTATTCTTAGGTATGCTGAGAAAGTAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAACTCTTTGGTTTTGGCGGAAAGAGTTATGTCCTACGTGAAGATGTAATCGACTTTTGTAGCATGCAAAAAGTGAAAACTTTATCAATGGTGGCTTACATCGCGTAAGTAAATGTTATTTGTTTGTGATATATTTATCATTTTTATTAAAAGTTTGTTAATGTGTTAGATCTATTATTGTAGGTACTTATACTCATTTTTTGTAGTCGAGAAGAAAATTTCGAAGTACATTTTTGTAGATCCATCTCTTATATTCGCGGGCCAAAATATTCAAGAGATTAGAGCTCGAAACCTTTGCAGTAGATTAATAACTTCTAAATAAGATCAACTAGTTATTGCTTCTTATAATCCAAGGTAAGTAAAATTTTACTCATTTCAAACTTGCATTAGTAGAAAAACTACTAATTAGTCGTGTATCTTATTTAGTGATCACTAGTCATTAATTGTTATTAATGGATATGAGGACGTGGTCTACTATCTCGACTCATTGAGAACAAACTCACAAGAAGATATCAAATACATAACAAATATGTAAGCTATAACTTTGTTTGTTTGTTTTTTTTTTTTTTTCTTCTTTTTTCCTTTTTTTTTTTTTTTTTTTTTGTTCTTTGGTGTAAAGTTTATTTCATTTTTTAATAATATTATATCTTCCGGCAAATGTAGGGCATTGAAAATTTTTCAATCTCAAAAGAATTTGAAAAGGCCTTGAAAAACCACATTTTGGAAAGCAGCAAATGTAAGTATAAGAAGTTCAAGTATTAATATAATGATGTACACATTTAGTGCAATATGTAATATGTATTATTGGTTTTGTACTGTAGTGTCCTTTACAAGTGGGAACTGTCGAACATGGGTATTATGTCATGAGATATATGAGAGAATTCTTGACTAAAGAAAATAGCATGATAAAAAATGCATTGTGTTTTTAAACTACCTATATTGTGACATTTATAGTGTAATGTGACCAATTTTTATTCTTCATGAAACATATATTTGACTCTTAATGTTTACAGGTTGATACAAGAAGCTCGTACTTACAGCTGCAATTGGATGAAATGCGAGTGGAGTGGGCTGAATTTTTAAGTCGCTTATCTAATAGTAGACGTGTATTTGGAATTGTTTCTATTGTGGATGGCTACATGAGAATATGCCTATATACTTTTTTTGTGAAATGTTTTATTCATATATAG

mRNA sequence

ATGGAGCTAGAAAGTGAGGAGGACTTGGAACTTCATTTGGATGATGTTACAATTGGTGTGAATAATGAGAATATGCATGATGTGACAAAAATTAGGAGTATAGGAGAGAGAAGGTATGCTGAGAAAGTAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAACTCTTTGGTTTTGGCGGAAAGAGTTATGTCCTACGTGAAGATGTAATCGACTTTTGTAGCATGCAAAAAGTGAAAACTTTATCAATGGTGGCTTACATCGCTCGAGAAGAAAATTTCGAAGGCATTGAAAATTTTTCAATCTCAAAAGAATTTGAAAAGGCCTTGAAAAACCACATTTTGGAAAGCAGCAAATTGTCCTTTACAAGTGGGAACTGTCGAACATGGGTTGATACAAGAAGCTCGTACTTACAGCTGCAATTGGATGAAATGCGAGTGGAGTGGGCTGAATTTTTAAGTCGCTTATCTAATAGTAGACGTGTATTTGGAATTGTTTCTATTGTGGATGGCTACATGAGAATATGCCTATATACTTTTTTTGTGAAATGTTTTATTCATATATAG

Coding sequence (CDS)

ATGGAGCTAGAAAGTGAGGAGGACTTGGAACTTCATTTGGATGATGTTACAATTGGTGTGAATAATGAGAATATGCATGATGTGACAAAAATTAGGAGTATAGGAGAGAGAAGGTATGCTGAGAAAGTAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAACTCTTTGGTTTTGGCGGAAAGAGTTATGTCCTACGTGAAGATGTAATCGACTTTTGTAGCATGCAAAAAGTGAAAACTTTATCAATGGTGGCTTACATCGCTCGAGAAGAAAATTTCGAAGGCATTGAAAATTTTTCAATCTCAAAAGAATTTGAAAAGGCCTTGAAAAACCACATTTTGGAAAGCAGCAAATTGTCCTTTACAAGTGGGAACTGTCGAACATGGGTTGATACAAGAAGCTCGTACTTACAGCTGCAATTGGATGAAATGCGAGTGGAGTGGGCTGAATTTTTAAGTCGCTTATCTAATAGTAGACGTGTATTTGGAATTGTTTCTATTGTGGATGGCTACATGAGAATATGCCTATATACTTTTTTTGTGAAATGTTTTATTCATATATAG

Protein sequence

MELESEEDLELHLDDVTIGVNNENMHDVTKIRSIGERRYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYIAREENFEGIENFSISKEFEKALKNHILESSKLSFTSGNCRTWVDTRSSYLQLQLDEMRVEWAEFLSRLSNSRRVFGIVSIVDGYMRICLYTFFVKCFIHI

Homology

[Close]

BLAST of Clc09G17170 vs. NCBI nr
Match: TYK08650.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-21
Identity = 73/166 (43.98%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI------- 97
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI       
Sbjct: 252 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYITDHWSLV 311

Query: 98  -----------------AREENFEGIENFSIS-------------KEFEKALKNHILESS 157
                            +  ++ + + N +++               F KA+K   +E  
Sbjct: 312 IINPYDDVVYHLDSLRTSSRDDIKYVTNMALTIFQYQKNLKKTRKTTFWKAIKVETVECG 371

[Close]

BLAST of Clc09G17170 vs. NCBI nr
Match: KAA0066224.1 (uncharacterized protein E6C27_scaffold21G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-21
Identity = 74/170 (43.53%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI------- 97
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI       
Sbjct: 276 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYITDHWSLV 335

Query: 98  -----------------AREENFEGIEN-----FSISKEFEKALKNHILESSK--LSFTS 157
                            +  ++ + + N     F   K  +K  K    ++ K  L   +
Sbjct: 336 IINPYDDVVYHLDSLRTSSRDDIKYVTNMALTIFQYQKNLKKTRKTTFWKAIKCPLQVET 395

[Close]

BLAST of Clc09G17170 vs. NCBI nr
Match: TYK01269.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI 91
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI
Sbjct: 220 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYI 272

[Close]

BLAST of Clc09G17170 vs. NCBI nr
Match: TYK22869.1 (hypothetical protein E5676_scaffold334G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 38   RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI 91
            RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI
Sbjct: 1334 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYI 1386

[Close]

BLAST of Clc09G17170 vs. NCBI nr
Match: KAA0032194.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI 91
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI
Sbjct: 665 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYI 717

[Close]

BLAST of Clc09G17170 vs. ExPASy TrEMBL
Match: A0A5D3CBD4 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00120 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.9e-22
Identity = 73/166 (43.98%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI------- 97
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI       
Sbjct: 252 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYITDHWSLV 311

Query: 98  -----------------AREENFEGIENFSIS-------------KEFEKALKNHILESS 157
                            +  ++ + + N +++               F KA+K   +E  
Sbjct: 312 IINPYDDVVYHLDSLRTSSRDDIKYVTNMALTIFQYQKNLKKTRKTTFWKAIKVETVECG 371

[Close]

BLAST of Clc09G17170 vs. ExPASy TrEMBL
Match: A0A5A7VFZ1 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002460 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 74/170 (43.53%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI------- 97
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI       
Sbjct: 276 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYITDHWSLV 335

Query: 98  -----------------AREENFEGIEN-----FSISKEFEKALKNHILESSK--LSFTS 157
                            +  ++ + + N     F   K  +K  K    ++ K  L   +
Sbjct: 336 IINPYDDVVYHLDSLRTSSRDDIKYVTNMALTIFQYQKNLKKTRKTTFWKAIKCPLQVET 395

[Close]

BLAST of Clc09G17170 vs. ExPASy TrEMBL
Match: A0A5D3DFW8 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00510 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 38  RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI 91
           RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI
Sbjct: 867 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYI 919

[Close]

BLAST of Clc09G17170 vs. ExPASy TrEMBL
Match: A0A5A7V9P5 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002270 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 38 RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI 91
          RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI
Sbjct: 24 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYI 76

[Close]

BLAST of Clc09G17170 vs. ExPASy TrEMBL
Match: A0A5D3D5Z2 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00230 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 38   RYAEKVMVDGTSISFQLPAELFGFGGKSYVLREDVIDFCSMQKVKTLSMVAYI 91
            RYAE+VMVDG+S SFQLP ELFG   KSYVLREDVIDFC+MQKVKTLSMVAYI
Sbjct: 1337 RYAERVMVDGSSFSFQLPLELFGISRKSYVLREDVIDFCNMQKVKTLSMVAYI 1389

The following BLAST results are available for this feature:

BLAST of Clc09G17170 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08650.1	1.4e-21	43.98	transposase [Cucumis melo var. makuwa]	[more]
KAA0066224.1	3.2e-21	43.53	uncharacterized protein E6C27_scaffold21G002460 [Cucumis melo var. makuwa]	[more]
TYK01269.1	1.2e-15	84.91	transposase [Cucumis melo var. makuwa]	[more]
TYK22869.1	1.2e-15	84.91	hypothetical protein E5676_scaffold334G00040 [Cucumis melo var. makuwa]	[more]
KAA0032194.1	1.2e-15	84.91	transposase [Cucumis melo var. makuwa]	[more]

BLAST of Clc09G17170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G17170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CBD4	6.9e-22	43.98	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00120 PE...	[more]
A0A5A7VFZ1	1.5e-21	43.53	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3DFW8	5.6e-16	84.91	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00510 PE...	[more]
A0A5A7V9P5	5.6e-16	84.91	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3D5Z2	5.6e-16	84.91	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00230 PE...	[more]

BLAST of Clc09G17170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G17170.2	Clc09G17170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity