Clc09G17105 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G17105
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome c biogenesis FN
LocationClcChr09: 27261483 .. 27265927 (+)
RNA-Seq ExpressionClc09G17105
SyntenyClc09G17105
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGCGAAGAATACATATTAAAACAGAAAGTAAAATACAGGATGAAAAAGCAGGCAAGAACAACTGGTCTGCAAAAATAAGAGGCAAAGAACAACTCATGAGCAAGGACATCTCTATAGGTGCGACCGTGGTGACAGACGACTTTGTAGGTGTAGTGAACGATTCTGTAAGTGCGACGATGGCGATGGACGAGCAAGATGATGGTGTGGTTGGTGACTTTAAGAGTGAGGGTGAGAGGAAGAGGAAATCATGAGGGAGAGGGAGAGTGAGAGGAAGAGCTTGAGAATGGAAAAAAAAAATGGGGGAAATTCAAAAAAAGATGAGAAACAAAATGTGAGAAAAAAATAAAGTTGGGTAGGGTTTCAAAAAAGTGGGGGCAAAACTAAAATCTGAACTTAAGGGTTTTCTACCCGCCCAATTTACATTGACAAATACTAAAAGTTTCTAGCCACGCATGTGCGTGGGTAGAAACTAAAATAAGTATCGACAGAAACCTAAACCTAATGATTTTCACTAAAACCACACAACTTTTTGCCCATGCATATATTTTCATCGGTAGAAATGATGTGCCTACACATTGAAAATTCGTTGGTAGAATATAGCTCTGCCGACATCTTTTGTTGCGTTGGTAGAAAAAACCGTTGGCAGAGACGAAAGTTCTTGTAGTTAGGTCCTTTTACTAGCTCACAACGGGTAAAACAAGGATCAAGAGTTTTTAAAAAACTGAAATGTTTAAAATTAGTTAAAGAAAATTTATGTTAATTGTATAAAATACAATTAATATAATGTATAATGATATATTATAATATAAAGTTAGTTTTGAATGAAATAAAAAAAATGAAACTATATAATATGAGAGTATAAATGTATTTGAATAAAATTCAAACAATAAATTAATATGAATAAGATTCACATTAAAACTATAGGTTATAGGTTATGAGGGAGAAGGGTATTTGAATATGATTCAAATAAATATTTAATTAAATATGAGATATTGATTAAATATATTGATTAATTAATTAATACAATTATTTATTAATTAAATGTTCTTAAATTAAATTAAATTAATTAAAAGAGAAATAAGTCTCTAACATTGCAGGGTGCGGGGAGTTACTCCCCCTCTCTCACTTTAAATTGTAGTGAATTTTGTATATTGAGGTTACCAATTTTTTTACATGAAAAAAATATGGATAACTTCTTTCTCTTTCTCTCAACTTCTCTCACATTCACAAAACCCAGAGAACAAATTCTCTTTCTTTTTCGTATCTCTTTCAAAAGGAGGTTTCCATACAATTGATCCGTACTAGAGAATAGAAGGAAAGGTCTTTTGGTAGCATCTTGGTACGAGATTGATTGTTGAGGAGGTCCATATGTTGAGAAGAGAAAAGAATTGTAGCTAGAATTTGAAGAAGAGTCTTTGAAGGGTAATTTCTTTTCCTCAAACACTTCTTTGGAGAAAGCATGCTTAATTCTTTTGTATGGTTTTTTTTTTTTTTTTTTCTCCTGTGTATTAATTCTTAAAAAATAATAATAATAAAGTGATCAATCACTTTAATTGTGGAATTGGATCCCTTCATGTTTAACCCCATCAGCGAGATTACTTACTGAGTATTTTTTAATACTCACTACCGCATATTTTTTTTAGGTAAGGGTAAAGGCTTGCGAGGGAGGTAAATAGTTGTTAATTGTGCTATCAAACCGTGTCTAATTGAGTTTTCGCTTTGCATATGCTTTAAGGCTTTTTTTTTTTTTTTTTTTTTTTTGTAAACTTTTATAATTTATTTTTCCTTGTTTTTGGTGGGATCCAGAAAATAGAACCTTATTCTTCTTTCAGTGGGTTTGATTTATTCGTCTTAAATATTTGATTTTATCGTTTTAAATAAATTTTGATTTTGCATTCATGAATAACACTAGTACATTTTTCTCGAGAAAAATTAGGTCGTTACAATTACACTTGAAATTGTGAGATTTTGAATGAGTTAATGTACTAATGATATGCTTGAACAAATTGTATGCTTAATCTTTCATATATACAAGTCATTTAACTAATATACTACAAGTTATAGTTTACATTTAGAACGTTAGTAATACAACTAATATAGCAAATTAAATATAACTCTGATATTGTAATGACCCCAATTTTTTTTTTTTTTATATTTTTAATTAACATAAATTAAGATAATTACTCCTAATTCATAATGGATTATTTTATAAAAAAATATAACTAATGCTTCTGTTAAAAATAAGTCTTATCATGCTAAATAAAACTTAAACTAAAAATTTTAGCAGTAGAAATCATAAAATAACAATATGTATTTAATAAGAAGTGAAAATAAAACAAAAAATATGGTTCTAGATTAATTAAACTAAACTTTGGGCAAGTTGTCTCATGGCTCCGTAGAAAATGCTTCTTTTATGCCTCGGGTATTAGCCACAACTCGTATTCATTCAGTCATTTTACCCCTTCTTCATTCTTGGACCTCATTTCTGAATATTGTGACTTTTTCATGCTGTGTCTCAGGAACCTTTTCAATACGGTTCGGATTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAAATGAAGCAGCAGGCATCGGTCTGTAGAACCTATAAGAAAGAGATGGTTGTGGCACGAAGTACTCTTGTGCACCTATGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTAATCCTCAGCGAACTCATCATCATCTACATGACTATTTGAAAAATGTAAAACCATACGAGGTAATATAAAAATACTTTGTAGGTGGCTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTATGTAGAAATACTCCTACCATAAACATCAATTCCACATGTAATATTTACAAGGTAATTACCCCATATGAATACCATTAACATGAATTAGTTTTGTTTCCTAAGCCAGCACTTAGTAGAAATCATACTTATCATCATATCATACCATCTAACTACATAAAATAACTGCTTAATTTGGGTGTTTCATGCATTGCATATTCTTTCCTAATCCTACGACACACAAGACTACCTAACTAAACCTCAATGCAATGTAACACACAAGTATGACATGCTTAACCTCAACATATTTTACTAATCAACAGGCCAACATAAATCATCAGATGCATAGAATTATGGAGAATTACTCAATGTAACATGTTAATTTCTAAAACAACGATTAAATATCAGAAAACAACAATATTCAATCAAACATATATTAGAGAAATGTAATATAAATCATTCGTAACCAATAATCTAATAAAAAAGATTCAACATATCACAATTAAACAAATACTTCATTTTTCATACAAGCACTAACAACCATAATTATTACAAGAAAATCAAATCAAAACTATAGATCAATAAAGCATGAGATCGACAACATATGACTAATATCACCACCAACAATTATACAACATAACAAAATAATACAACTATGCAATTAAACATCAAAGTGAAGAAAACAAAAAAAAAATCGGTTACTTATAATAGAGTTCACTTACTTTAAGCTTGAAATCTAAATTTTTTAATAGTTCTAAAGAAAATTGAAAGGTAGAGAAAATGATATTTACCGTTTGATGTGTTTTATTCTCTACGATAATGATGGGTAGAAGAAACCTTAAATGACTAAGGTGCTTGAGATAATACATGAATACCTTACAAAAAGATCCTAAACTAAATTTAAATAATTTATTACACTAGTTGATCTAAATTAGCAAAGAAACTATAATATTATAAAATTACTAAAATACCCTTAATGATTGTGTGGGTCATTAGCAGATATATTATAATTATCATATCAAAATATTTTGAAAACAAAATAGATTAACCGATATAGTTATATTTGGTATATTAGTAATCACAACTAATACAATTAATATATACCTTCAAAATCATATTAAACATTAAAAAAGATAACAAATCACACCCATAAAAGATTAGAAAAATCAAACCAATGGAACAAAATTAAACAACTCCCAAACCAAATGAAATAAAAAAGAAAAACAATATCAATCATAAACGGAAAAAAACAAATAAAAACAAAAAAAAAAAAATCGATTAAAATTAGTATATTATACAAAATGTTCTTCCATGTGTAGCTAAACTGAGTTTTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGAAAATTTATAACAATCAATTCAATTCTATCGCTAATCATTTAACATGTTAAAAAAGAAGTTGTCAGTAAATGAAACATAGAAGACCAATGCTCATACATTGGCATGACAGGGGATCTCTGGTTCGAGTTTGCTAAGGCTTCATGAATAG

mRNA sequence

ATGAAGTTGCGAAGAATACATATTAAAACAGAAAGTAAAATACAGGATGAAAAAGCAGGCAAGAACAACTGGTCTGCAAAAATAAGAGGCAAAGAACAACTCATGAGCAAGGACATCTCTATAGGTGCGACCGTGGTGACAGACGACTTTGTAGGTGTAGTGAACGATTCTGTAAGTGCGACGATGGCGATGGACGAGCAAGATGATGGTGTGGTTGGTGACTTTAAGAGTGAGGAAAATGCTTCTTTTATGCCTCGGGTATTAGCCACAACTCGTATTCATTCAGTCATTTTACCCCTTCTTCATTCTTGGACCTCATTTCTGAATATTGTGACTTTTTCATGCTGTGTCTCAGGAACCTTTTCAATACGGTTCGGATTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAAATGAAGCAGCAGGCATCGGTCTGTAGAACCTATAAGAAAGAGATGGTTGTGGCACGAAGTACTCTTGTGCACCTATGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTAATCCTCAGCGAACTCATCATCATCTACATGACTATTTGAAAAATGTAAAACCATACGAGGGGATCTCTGGTTCGAGTTTGCTAAGGCTTCATGAATAG

Coding sequence (CDS)

ATGAAGTTGCGAAGAATACATATTAAAACAGAAAGTAAAATACAGGATGAAAAAGCAGGCAAGAACAACTGGTCTGCAAAAATAAGAGGCAAAGAACAACTCATGAGCAAGGACATCTCTATAGGTGCGACCGTGGTGACAGACGACTTTGTAGGTGTAGTGAACGATTCTGTAAGTGCGACGATGGCGATGGACGAGCAAGATGATGGTGTGGTTGGTGACTTTAAGAGTGAGGAAAATGCTTCTTTTATGCCTCGGGTATTAGCCACAACTCGTATTCATTCAGTCATTTTACCCCTTCTTCATTCTTGGACCTCATTTCTGAATATTGTGACTTTTTCATGCTGTGTCTCAGGAACCTTTTCAATACGGTTCGGATTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAAATGAAGCAGCAGGCATCGGTCTGTAGAACCTATAAGAAAGAGATGGTTGTGGCACGAAGTACTCTTGTGCACCTATGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTAATCCTCAGCGAACTCATCATCATCTACATGACTATTTGAAAAATGTAAAACCATACGAGGGGATCTCTGGTTCGAGTTTGCTAAGGCTTCATGAATAG

Protein sequence

MKLRRIHIKTESKIQDEKAGKNNWSAKIRGKEQLMSKDISIGATVVTDDFVGVVNDSVSATMAMDEQDDGVVGDFKSEENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPHEVVFEKCHGNPQRTHHHLHDYLKNVKPYEGISGSSLLRLHE
Homology
[Close]
BLAST of Clc09G17105 vs. NCBI nr
Match: QEM01536.1 (cytochrome C biogenesis factor N [Solanum tuberosum] >QPF97150.1 cytochrome c biogenesis factor N [Solanum ahanhuiri] >QPF97424.1 cytochrome c biogenesis factor N [Solanum tuberosum subsp. andigenum] >QPF97565.1 cytochrome c biogenesis factor N [Solanum x juzepczukii] >QPF97637.1 cytochrome c biogenesis factor N [Solanum chaucha] >QPF97871.1 cytochrome c biogenesis factor N [Solanum bukasovii])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 475 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 534

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 535 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 594

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 595 LIVFQACSG 601

[Close]
BLAST of Clc09G17105 vs. NCBI nr
Match: YP_009682049.1 (cytochrome c biogenesis FN [Physochlaina orientalis] >QDQ38362.1 cytochrome c biogenesis FN [Physochlaina orientalis])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 451 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 510

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 511 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 570

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 571 LIVFQACSG 577

[Close]
BLAST of Clc09G17105 vs. NCBI nr
Match: ATW72861.1 (ccmFN [Solanum commersonii] >AUS83394.1 CcmFN [Solanum tuberosum] >QPF97020.1 cytochrome c biogenesis factor N [Solanum stenotomum subsp. goniocalyx] >QPF97227.1 cytochrome c biogenesis factor N [Solanum phureja] >QPF97294.1 cytochrome c biogenesis factor N [Solanum stenotomum subsp. stenotomum] >QPF97357.1 cytochrome c biogenesis factor N [Solanum bukasovii] >QPF97710.1 cytochrome c biogenesis factor N [Solanum x curtilobum])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 461 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 520

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 521 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 580

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 581 LIVFQACSG 587

[Close]
BLAST of Clc09G17105 vs. NCBI nr
Match: YP_009430473.1 (cytochrome c maturation protein CcmFN [Solanum lycopersicum] >YP_009430483.1 cytochrome c maturation protein CcmFN [Solanum pennellii] >ATD51578.1 cytochrome c maturation protein CcmFN [Solanum lycopersicum] >ATD51592.1 cytochrome c maturation protein CcmFN [Solanum lycopersicum] >ATD51632.1 cytochrome c maturation protein CcmFN [Solanum pennellii])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 461 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 520

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 521 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 580

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 581 LIVFQACSG 587

[Close]
BLAST of Clc09G17105 vs. NCBI nr
Match: YP_009049706.1 (cytochrome c maturation protein CcmFN [Capsicum annuum] >AIG89890.1 cytochrome c maturation protein CcmFN [Capsicum annuum] >AIG90065.1 cytochrome c maturation protein CcmFN [Capsicum annuum] >QFV19555.1 cytochrome c maturation protein CcmFN [Capsicum annuum var. glabriusculum])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 461 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 520

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 521 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 580

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 581 LIVFQACSG 587

[Close]
BLAST of Clc09G17105 vs. ExPASy Swiss-Prot
Match: Q04647 (Probable cytochrome c biosynthesis protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVT  CCVSGT SIR GLLAPVHSFATDD
Sbjct: 456 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTLPCCVSGTSSIRSGLLAPVHSFATDD 515

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHL 187
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMV+ARSTLVHL
Sbjct: 516 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVMARSTLVHL 563

[Close]
BLAST of Clc09G17105 vs. ExPASy Swiss-Prot
Match: Q33884 (Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Fragment) OS=Arabidopsis thaliana OX=3702 GN=CCMFN2 PE=1 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 2.7e-44
Identity = 95/108 (87.96%), Postives = 95/108 (87.96%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMP VLAT  IHSVILP LHSWT FLNIVTF CCV GTFSIR GLLA VHSFATDD
Sbjct: 80  ENASFMPWVLATACIHSVILPFLHSWTLFLNIVTFLCCVLGTFSIRSGLLASVHSFATDD 139

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHL 187
           TRGIFLW FFLLMTGI MILF QMKQQASV RTYKKEMVVARSTLVHL
Sbjct: 140 TRGIFLWWFFLLMTGIFMILFYQMKQQASVRRTYKKEMVVARSTLVHL 187

[Close]
BLAST of Clc09G17105 vs. ExPASy Swiss-Prot
Match: Q04648 (Probable cytochrome c biosynthesis protein OS=Oenothera berteroana OX=3950 PE=2 SV=3)

HSP 1 Score: 179.9 bits (455), Expect = 3.5e-44
Identity = 95/108 (87.96%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMP VLAT  IHSVILPLLHS T  +NIVTF CCV GTFSIR GLLA VHSFATDD
Sbjct: 454 ENASFMPWVLATACIHSVILPLLHSCTLLINIVTFLCCVLGTFSIRSGLLASVHSFATDD 513

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHL 187
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTY+KEMVVARSTLVHL
Sbjct: 514 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYQKEMVVARSTLVHL 561

[Close]
BLAST of Clc09G17105 vs. ExPASy Swiss-Prot
Match: P36180 (Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha OX=3197 GN=YMF4 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-29
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMP VLAT  IHSVILP L+ WT FLN+VTF CC+ GTF +R GLLA VHSFATD 
Sbjct: 355 ENASFMPWVLATACIHSVILPKLNDWTLFLNMVTFLCCILGTFFVRSGLLASVHSFATDS 414

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQAS 168
           TRGIFLW FFLL+T IS + F +MKQQ+S
Sbjct: 415 TRGIFLWCFFLLITSISFLFFFKMKQQSS 443

[Close]
BLAST of Clc09G17105 vs. ExPASy Swiss-Prot
Match: Q9I3N2 (Cytochrome c-type biogenesis protein CcmF OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=ccmF PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILP----LLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSF 138
           ENASFMP ++ T  IHS+ +     +  SWT  L I  FS  + GTF +R G+L  VH+F
Sbjct: 246 ENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAF 305

Query: 139 ATDDTRGIFLWRFFLLMTGISMILFS 161
           A+D  RG+F+  F LL+ G S+ LF+
Sbjct: 306 ASDPERGVFILAFLLLVVGGSLTLFA 331

[Close]
BLAST of Clc09G17105 vs. ExPASy TrEMBL
Match: A0A290WKZ9 (CcmFn OS=Solanum lycopersicum OX=4081 GN=ccmFN PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 461 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 520

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 521 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 580

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 581 LIVFQACSG 587

[Close]
BLAST of Clc09G17105 vs. ExPASy TrEMBL
Match: A0A7S9H4F1 (Cytochrome c biogenesis factor N OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=ccmFN PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 461 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 520

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 521 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 580

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 581 LIVFQACSG 587

[Close]
BLAST of Clc09G17105 vs. ExPASy TrEMBL
Match: A0A0C5B9X0 (Cytochrome c biogenesis FN OS=Nicotiana tabacum/Hyoscyamus niger cybrid OX=1520274 GN=ccmFN PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 451 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 510

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 511 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 570

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 571 LIVFQACSG 577

[Close]
BLAST of Clc09G17105 vs. ExPASy TrEMBL
Match: A0A7S9H578 (Cytochrome c biogenesis factor N OS=Solanum tuberosum subsp. andigenum OX=80418 GN=ccmFN PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 475 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 534

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 535 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 594

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 595 LIVFQACSG 601

[Close]
BLAST of Clc09G17105 vs. ExPASy TrEMBL
Match: A0A5C1H778 (Cytochrome C biogenesis factor N OS=Solanum tuberosum OX=4113 GN=ccmFN PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 475 ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 534

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHLCLHDYLKNVKPH 198
           TRGIFLWRFFLLMTGISMILFSQMKQQASV RTYKKEMVVARSTLVH  L    +  K  
Sbjct: 535 TRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVH--LRHSARAQKVG 594

Query: 199 EVVFEKCHG 208
            +VF+ C G
Sbjct: 595 LIVFQACSG 601

[Close]
BLAST of Clc09G17105 vs. TAIR 10
Match: ATMG00960.1 (Cytochrome C assembly protein )

HSP 1 Score: 198.4 bits (503), Expect = 6.7e-51
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 79  ENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFATDD 138
           ENASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFATDD
Sbjct: 80  ENASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFATDD 139

Query: 139 TRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHL 187
           TRGIFLW FFLLMTGISMILF QMKQQASV RTYKKEMVVARSTLVHL
Sbjct: 140 TRGIFLWWFFLLMTGISMILFYQMKQQASVRRTYKKEMVVARSTLVHL 187

[Close]
BLAST of Clc09G17105 vs. TAIR 10
Match: AT2G07768.1 (Cytochrome C assembly protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-50
Identity = 102/110 (92.73%), Postives = 102/110 (92.73%), Query Frame = 0 

Query: 77  SEENASFMPRVLATTRIHSVILPLLHSWTSFLNIVTFSCCVSGTFSIRFGLLAPVHSFAT 136
           S  NASFMPRVLAT RIHSVILPLLHSWTSFLNIVTF CCVSGTFSIR GLLAPVHSFAT
Sbjct: 29  SRRNASFMPRVLATARIHSVILPLLHSWTSFLNIVTFPCCVSGTFSIRSGLLAPVHSFAT 88

Query: 137 DDTRGIFLWRFFLLMTGISMILFSQMKQQASVCRTYKKEMVVARSTLVHL 187
           DDTRGIFLW FFLLMTGISMILF QMKQQASV RTYKKEMVVARSTLVHL
Sbjct: 89  DDTRGIFLWWFFLLMTGISMILFYQMKQQASVRRTYKKEMVVARSTLVHL 138

The following BLAST results are available for this feature:
BLAST of Clc09G17105 vs. NCBI nr
Match NameE-valueIdentityDescription
QEM01536.13.4e-4984.50cytochrome C biogenesis factor N [Solanum tuberosum] >QPF97150.1 cytochrome c bi... [more]
YP_009682049.13.4e-4984.50cytochrome c biogenesis FN [Physochlaina orientalis] >QDQ38362.1 cytochrome c bi... [more]
ATW72861.13.4e-4984.50ccmFN [Solanum commersonii] >AUS83394.1 CcmFN [Solanum tuberosum] >QPF97020.1 cy... [more]
YP_009430473.13.4e-4984.50cytochrome c maturation protein CcmFN [Solanum lycopersicum] >YP_009430483.1 cyt... [more]
YP_009049706.13.4e-4984.50cytochrome c maturation protein CcmFN [Capsicum annuum] >AIG89890.1 cytochrome c... [more]
BLAST of Clc09G17105 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q046472.1e-4993.52Probable cytochrome c biosynthesis protein OS=Daucus carota OX=4039 PE=2 SV=1[more]
Q338842.7e-4487.96Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Fragment) ... [more]
Q046483.5e-4487.96Probable cytochrome c biosynthesis protein OS=Oenothera berteroana OX=3950 PE=2 ... [more]
P361809.2e-2971.91Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha OX=3197 GN=Y... [more]
Q9I3N27.8e-1245.35Cytochrome c-type biogenesis protein CcmF OS=Pseudomonas aeruginosa (strain ATCC... [more]
BLAST of Clc09G17105 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A290WKZ91.7e-4984.50CcmFn OS=Solanum lycopersicum OX=4081 GN=ccmFN PE=3 SV=1[more]
A0A7S9H4F11.7e-4984.50Cytochrome c biogenesis factor N OS=Solanum stenotomum subsp. goniocalyx OX=1050... [more]
A0A0C5B9X01.7e-4984.50Cytochrome c biogenesis FN OS=Nicotiana tabacum/Hyoscyamus niger cybrid OX=15202... [more]
A0A7S9H5781.7e-4984.50Cytochrome c biogenesis factor N OS=Solanum tuberosum subsp. andigenum OX=80418 ... [more]
A0A5C1H7781.7e-4984.50Cytochrome C biogenesis factor N OS=Solanum tuberosum OX=4113 GN=ccmFN PE=3 SV=1[more]
BLAST of Clc09G17105 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00960.16.7e-5194.44Cytochrome C assembly protein [more]
AT2G07768.11.1e-5092.73Cytochrome C assembly protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003569Probable cytochrome c biosynthesis protein, plantsPRINTSPR01412CCBSBIOGNSIScoord: 95..116
score: 80.68
coord: 145..165
score: 85.71
IPR003567Cytochrome c-type biogenesis proteinPRINTSPR01410CCBIOGENESIScoord: 140..159
score: 47.22
coord: 104..124
score: 52.38
coord: 78..98
score: 57.14
coord: 124..140
score: 63.4
IPR003567Cytochrome c-type biogenesis proteinPANTHERPTHR43653CYTOCHROME C ASSEMBLY PROTEIN-RELATEDcoord: 79..188
NoneNo IPR availablePANTHERPTHR43653:SF1CYTOCHROME C ASSEMBLY PROTEIN-RELATEDcoord: 79..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G17105.1Clc09G17105.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
biological_process GO:0015886 heme transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016020 membrane
molecular_function GO:0020037 heme binding
molecular_function GO:0015232 heme transmembrane transporter activity