Clc09G16950 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G16950
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr09: 27092559 .. 27096301 (-)
RNA-Seq Expression	Clc09G16950
Synteny	Clc09G16950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGATGCAAGCAACCATGCAGTGGGAGCAGTATTGGGGCAAAGAAAAGAGAAAATAATGCACCCCATCTATTATGCGAGTAAAACATTGAATGCGTCTCAGGAGAACTACACTACTACTGAGAAGGAAATGTTAGCCATAGTCTTTGCGGTTGACAAATTCTATAAGCCCCGTACCTAAACTTGTGAGAAAATAAGGTAAGAAGGGACCAAGAGATGGACGCATGGGTAGGAGTAGTTGGCTGGAATGTGATTAGGCGGAAAAATGACTAAGTACCCGCTATGCGTTGGTGGCAATGCGCCTTGATGGAAATAGTTTTGGCGTGGACGCAAAAGTGAGGGAAGACTGTTAGGTGTTGAGGCCACGACGCGTTGAGGTCATAAGGCGTGGAGAGCCTCATTGTACCGAAAATTATCTTACGACAAACGCATTGAAGGCTGCAGGGCGTTGGAAGTTAAAGGCCATGAGGAGTTGAGAGCTGACTTGCTATGAGGCCAATATGCGGTGAACGCTACCATGCGTCGAAAATGGGTATGCGTTAGACAAAGAAGGTTGGCCGAGAGAGTAATGCGTTTGTTAACCATCTGGCGAGAGAGTTTTGAAAGGTATCACCATCAGAGGCCATGTGTTGCTGAAGCATAGAAAGTATGCGTTGAATAGATGGTAGTATAGTGTTGAAATGGAGATTAAGTCGGTGGTATATATATAAGTGGATTGAGAATTCAATTGTTTTTATTACATTTCAGAGCTCAAGTTGGGTCCATTTCGAAGTTAAACATTGGAGGGAGGTAGAAGAAGACGTTCATGTCGATTGGAGTGGAAATCTCATCGTAACCGTGGAGGAAACTTGAGCTGGGCAGAGGATTTAGCTGGTGTTACTCTCTCAGAGTGACGTTCGGTTTTAGAGGAAGAACAAATTGAAGAAACAGTGGTTAGGGCAAGAATTTCTAAGGTTAGTAAGTTAACTCGATTTTGAGCAAGTTTCATGAAGGATGCTTGAGCTGAAATTGTATAAATGTGTGTCAAACTCAGACAGAAGAGATTAAAGCTGATTTTTGCCGGACGATTAGGAGTAACTCGGAGTTGTTGAAGGATATACCCTAAACGGAGAGGATGTTCTTCATGAAATTTGGAGGTAAGATGAAGGACTTACACCTTAACAAGTTTGTAGAAGGAAGTAAGTTCTGGAATTGACCAAAATGTAATGTTTAGCAGGTCGAAGAAGGAAGAGGAAAAGAAGAGGGAAACAGTTCTGCTGCAGCGGTAGTATCGCTGAGAGAGCGAGAGACAGGGAGCGAAGCAAGTATCGCTGTAACGCAAAGAGGCTTTGCGTCTCACGATTCTCGCTAGAATATTGCTGGGTGTCGCTCCTAAGGTAGTTTCGCTAGTTACGTCCAACTTAGTGTCGCTGGTACAGTAGTATGTGATGAATCTCGCTAATAGCCTTTAGTTGTCTGAAGTATAATGCTATTAATGTGTGTTAAGGGAGAAAGGAAGATTTATGGAACTGAACATGAGAAATATGTATTTTCAGGCCAGGAAGAGCTCGGGGAGGCTTATAATCCACTTAGAGCCGGGACAAGTTGTGAGTGACCTTTTATTATATCTTGTGGTTATCTTAGTATACTTATTTGATGAGGAAATGTGGTACTTTGCAGTATTCATAGTGAATATTAAATGCTAGCCAATTAAAAGAAAACTAGTTCTATTGTTTAAATATAGTAATGGCTAAGGGACCTTATGGTGAAAGCCTATGTGAAAGAAAGCATGAAGTTAAGTGCTGAGGGACCTTGTGTGAAAGCACTTGAATAGTTAAGAGGAATGGATTTCCATGCTGAGGGACTTGAGTGAAAGCATGTAGTAGTCCATCACATATTAATTCGTGCTGAGGGACCATGTGTGAAGGCACTTGAGCGAAGAATGAATTGGTTACCAGTGTTGAGGGACTTTTTGTGAAGGCACATGGTAATGTAGACGTAATCGAATACGGTGCTGAGGAACAGAATGTGAAGGCACTTGATAGTTGCAAATTTGTGAAACATGATGGTTTTTGACATTTAGTGTAATTAGAAATGAGAACTTTAGTAACTCTCTGAAATGCAATATGTAAAGACTACAAATGGATAAGCTAGCTCATGTTTGTTAGTGATAGTTAAATGAATTTAGTCACTCACTGGGCTTTTTGCTCACTCAGTTTGTTGTTGTTTGTCGTTTCAGGTAGCGAGCGTGTCCGGGACGCCTAGCCTACAGAAGTAACTCGTCTGGGCCTATCTGGAAGCAAACCTCTGGGATAGTTGTAAATATTTAGTCTGTGCTCATGTTTTGTAACGTACACGTTTCTTAGAGAAGATGGGAAGTTGATTTGTATCTAATATATATTTACAGAGAATACCTGTTGAGAGATTGTATGTTTTCCTATTGTTTTAATAGCAATGTTGTTTTGAATTTGAGATTTATCTGGCGTCTAATTTCAATAATGTATATAGGGAGTACAATATCACGCTCAATCCTAGGTATAGAGTGTATCTGGGATGGGGTGTGAAAAATTCAGAGCATATTTGATAGGGTCAAAGGTGACCATCTATAGCGATCATTCTGCGATCAAATATTTGATGGCGAAAAAGAACGCAAAGCCTAGACTCATCCGCTGGGTCCTGCTATTACAAGAATTTGACTTGGAGATTAAAGACAGAAAGGGAACCGAGAATCAGGTTGCGGACCACCTATCTCGGTTGGAAAATAAAGAGGTCCAGGAAAGTTGGAGTGATATAGAGGAACAATTGCCAGATGAGCACATCATGAATGCAGAGAGTCAGGAACCGTGGTATGCAGACATAGTAAATTACTTGGTCTGCAACCAATGGCCTGAAGAATTCAATGCTCAACAAAAGAAAAAACTCCAATATAAAAGTAAGTTCTACTGCTGGGATGAGCCATATCTATACAGACTTAGCTCGGACCACATACTACGTCGATGCGTTCCAAAATATGAAACGCATAGCATTTTGAGAAGCTGTCATGAAGCACTTTACGGAGGACACTTTGGGGGGCAGAGAACAGCTGCAAAGGTGTTGCAAAGTGGGTATTTCTAGCCCACATTATTCAAAGACGCAAGAGCATATGCGGTGGCTTGCGATCGTTGTCAAAGGACAGGCAACATTTCCAACCGAAATGAGATGCCTCTAAACTCTATGCTGGAAGTTGAGTTGTTTGACGTATGGAGAATCGATTTCATGGGACCATTTCCTCCCTCTTGCGGTAATCAATATATCCTAGTAGCGGTCGACTACGTATCAAAATGGGTAGAAGCAGCAGCCTGTGCGAAGAACGACGCAAACACAGTGTCCAAGTTCTTAAAGAAACAAATCTTCTCTCGATTTAGGACACCAAGGGCGATAATTAGTGATGAAGGTACACATTTTATAAATCGCATAATCACTAATTTACTGACAAAATTTAATGTCTCGCACAGGGTAGCAACTGCTTATCACCCACAGACAAACGGCCAAGCTGAAATAACAAACTGGGAGATCAAGTCCATACTTGAAAAAAAAGTCGTGAGCACATCAAGGAAAGATTGGACGGAGAAATTAGATGAAGCTCTATGGGCATACAGAACAGCATTCAAAACACCTATAGGCATGTCACCCTATGCGCTGGTGTTTGGGAAAGCATGCCATCTCCCGCTTGAGCTGGAACACAAGGCCATCTGGGCTATGAAGAAGCTCAATCTAGACTAG

mRNA sequence

ATGTGCGATGCAAGCAACCATGCAGTGGGAGCAGTATTGGGGCAAAGAAAAGAGAAAATAATGCACCCCATCTATTATGCGAGTAAAACATTGAATGCGTCTCAGGAGAACTACACTACTACTGAGAAGGAAATGTTAGCCATAGTCTTTGCGGTTGACAAATTCTATAAGCCCCGTCGAAGAAGGAAGAGGAAAAGAAGAGGGAAACAGTTCTGCTGCAGCGGTAGTATCGCTGAGAGAGCGAGAGACAGGGAGCGAAGCAAGTATCGCTGTAACGCAAAGAGGCTTTGCGTCTCACGATTCTCGCTAGAATATTGCTGGGTGTCGCTCCTAAGTGTTGAGGGACTTTTTGTGAAGGCACATGGTAATGTAGACGTAATCGAATACGGTGCTGAGGAACAGAATGTGAAGGCACTTGATAGTTGCAAATTTGTGAAACATGATGGGTCAAAGGTGACCATCTATAGCGATCATTCTGCGATCAAATATTTGATGGCGAAAAAGAACGCAAAGCCTAGACTCATCCGCTGGGTCCTGCTATTACAAGAATTTGACTTGGAGATTAAAGACAGAAAGGGAACCGAGAATCAGGTTGCGGACCACCTATCTCGGTTGGAAAATAAAGAGGTCCAGGAAAGTTGGAGTGATATAGAGGAACAATTGCCAGATGAGCACATCATGAATGCAGAGAGTCAGGAACCGTGGTATGCAGACATAGTAAATTACTTGGTCTGCAACCAATGGCCTGAAGAATTCAATGCTCAACAAAAGAAAAAACTCCAATATAAAAGTAAGTTCTACTGCTGGGATGAGCCATATCTATACAGACTTAGCTCGGACCACATACTACGTCGATGCGTTCCAAAATATGAAACGCATAGCATTTTGAGAAGCTGTCATGAAGCACTTTACGGAGGACACTTTGGGGGGCAGAGAACAGCTGCAAAGGTGTTGCAAAGTGGGACAGGCAACATTTCCAACCGAAATGAGATGCCTCTAAACTCTATGCTGGAAGTTGAGTTGTTTGACGTATGGAGAATCGATTTCATGGGACCATTTCCTCCCTCTTGCGGTAATCAATATATCCTAGTAGCGGTCGACTACGTATCAAAATGGGTAGAAGCAGCAGCCTGTGCGAAGAACGACGCAAACACAGTGTCCAAGTTCTTAAAGAAACAAATCTTCTCTCGATTTAGGACACCAAGGGCGATAATTAGTGATGAAGGTACACATTTTATAAATCGCATAATCACTAATTTACTGACAAAATTTAATGTCTCGCACAGGGTAGCAACTGCTTATCACCCACAGACAAACGGCCAAGCTGAAATAACAAACTGGGAGATCAAGTCCATACTTGAAAAAAAAGTCGTGAGCACATCAAGGAAAGATTGGACGGAGAAATTAGATGAAGCTCTATGGGCATACAGAACAGCATTCAAAACACCTATAGGCATGTCACCCTATGCGCTGGTGTTTGGGAAAGCATGCCATCTCCCGCTTGAGCTGGAACACAAGGCCATCTGGGCTATGAAGAAGCTCAATCTAGACTAG

Coding sequence (CDS)

ATGTGCGATGCAAGCAACCATGCAGTGGGAGCAGTATTGGGGCAAAGAAAAGAGAAAATAATGCACCCCATCTATTATGCGAGTAAAACATTGAATGCGTCTCAGGAGAACTACACTACTACTGAGAAGGAAATGTTAGCCATAGTCTTTGCGGTTGACAAATTCTATAAGCCCCGTCGAAGAAGGAAGAGGAAAAGAAGAGGGAAACAGTTCTGCTGCAGCGGTAGTATCGCTGAGAGAGCGAGAGACAGGGAGCGAAGCAAGTATCGCTGTAACGCAAAGAGGCTTTGCGTCTCACGATTCTCGCTAGAATATTGCTGGGTGTCGCTCCTAAGTGTTGAGGGACTTTTTGTGAAGGCACATGGTAATGTAGACGTAATCGAATACGGTGCTGAGGAACAGAATGTGAAGGCACTTGATAGTTGCAAATTTGTGAAACATGATGGGTCAAAGGTGACCATCTATAGCGATCATTCTGCGATCAAATATTTGATGGCGAAAAAGAACGCAAAGCCTAGACTCATCCGCTGGGTCCTGCTATTACAAGAATTTGACTTGGAGATTAAAGACAGAAAGGGAACCGAGAATCAGGTTGCGGACCACCTATCTCGGTTGGAAAATAAAGAGGTCCAGGAAAGTTGGAGTGATATAGAGGAACAATTGCCAGATGAGCACATCATGAATGCAGAGAGTCAGGAACCGTGGTATGCAGACATAGTAAATTACTTGGTCTGCAACCAATGGCCTGAAGAATTCAATGCTCAACAAAAGAAAAAACTCCAATATAAAAGTAAGTTCTACTGCTGGGATGAGCCATATCTATACAGACTTAGCTCGGACCACATACTACGTCGATGCGTTCCAAAATATGAAACGCATAGCATTTTGAGAAGCTGTCATGAAGCACTTTACGGAGGACACTTTGGGGGGCAGAGAACAGCTGCAAAGGTGTTGCAAAGTGGGACAGGCAACATTTCCAACCGAAATGAGATGCCTCTAAACTCTATGCTGGAAGTTGAGTTGTTTGACGTATGGAGAATCGATTTCATGGGACCATTTCCTCCCTCTTGCGGTAATCAATATATCCTAGTAGCGGTCGACTACGTATCAAAATGGGTAGAAGCAGCAGCCTGTGCGAAGAACGACGCAAACACAGTGTCCAAGTTCTTAAAGAAACAAATCTTCTCTCGATTTAGGACACCAAGGGCGATAATTAGTGATGAAGGTACACATTTTATAAATCGCATAATCACTAATTTACTGACAAAATTTAATGTCTCGCACAGGGTAGCAACTGCTTATCACCCACAGACAAACGGCCAAGCTGAAATAACAAACTGGGAGATCAAGTCCATACTTGAAAAAAAAGTCGTGAGCACATCAAGGAAAGATTGGACGGAGAAATTAGATGAAGCTCTATGGGCATACAGAACAGCATTCAAAACACCTATAGGCATGTCACCCTATGCGCTGGTGTTTGGGAAAGCATGCCATCTCCCGCTTGAGCTGGAACACAAGGCCATCTGGGCTATGAAGAAGCTCAATCTAGACTAG

Protein sequence

MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRRRRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKAHGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLLLQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMNAESQEPWYADIVNYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSCHEALYGGHFGGQRTAAKVLQSGTGNISNRNEMPLNSMLEVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLNLD

Homology

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BLAST of Clc09G16950 vs. NCBI nr
Match: WP_217833161.1 (DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 589.7 bits (1519), Expect = 2.4e-164
Identity = 288/335 (85.97%), Postives = 299/335 (89.25%), Query Frame = 0


Query: 205 LENKEVQESWSDIEEQLPDEHIMNAESQEPWYADIVNYLVCNQWPEEFNAQQKKKLQYKS 264
           +ENKEVQ+SWSDIEE+ PDEH+M A+SQEPWY DIVNYLVCNQWPEEFNA QKKKL+++S
Sbjct: 1   MENKEVQDSWSDIEERFPDEHVMKAKSQEPWYTDIVNYLVCNQWPEEFNAHQKKKLRHES 60

Query: 265 KFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSCHEALYGGHFGGQRTAAKVLQSG--- 324
           KFYCWDEPYLYRL  DHILRRCVP+YETHSIL+SCHEA YGGHFGGQRTAAKVLQSG   
Sbjct: 61  KFYCWDEPYLYRLGLDHILRRCVPEYETHSILKSCHEAPYGGHFGGQRTAAKVLQSGYFW 120

Query: 325 -------------------TGNISNRNEMPLNSMLEVELFDVWRIDFMGPFPPSCGNQYI 384
                              TGNISNRNEMPLNSMLEVELFDVW IDFMGPFPPSCGNQYI
Sbjct: 121 PTLFKDARAYAVACDRCQRTGNISNRNEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYI 180

Query: 385 LVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAIISDEGTHFINRIITNLLT 444
           LVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRF TPRAIISDEGTHFINRIITNLLT
Sbjct: 181 LVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAIISDEGTHFINRIITNLLT 240

Query: 445 KFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKDWTEKLDEALWAYRTAFKT 504
           KFNVSHRVATAYHPQTN QAEITN EIKSILE KVVSTSRKDWTE+LDEALWAYRT FKT
Sbjct: 241 KFNVSHRVATAYHPQTNDQAEITNQEIKSILE-KVVSTSRKDWTERLDEALWAYRTTFKT 300

Query: 505 PIGMSPYALVFGKACHLPLELEHKAIWAMKKLNLD 518
           PIGMSPYALVFGKACHL LELEHKAIWAMKKLNLD
Sbjct: 301 PIGMSPYALVFGKACHLSLELEHKAIWAMKKLNLD 334

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BLAST of Clc09G16950 vs. NCBI nr
Match: PIM97577.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 540.8 bits (1392), Expect = 1.3e-149
Identity = 289/540 (53.52%), Postives = 346/540 (64.07%), Query Frame = 0


Query: 1    MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
            MCDAS+ AVGAVLGQRK+KI   IYYASKTLN +Q NYTTTEKE+LA+VFA DKF     
Sbjct: 1003 MCDASDFAVGAVLGQRKDKIFRSIYYASKTLNDAQLNYTTTEKELLAVVFAFDKF----- 1062

Query: 61   RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                     RS                                 
Sbjct: 1063 -------------------------RSYL------------------------------- 1122

Query: 121  HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                        G+KV +Y+DH+AI+YL+ KK+AKPRLIRWVLL
Sbjct: 1123 ---------------------------VGTKVIVYTDHAAIRYLIEKKDAKPRLIRWVLL 1182

Query: 181  LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMN-AESQEPWYADI 240
            LQEFDLEI+DRKGTENQ+ADHLSRLE+    +  + I +  PDE ++    S  PWYADI
Sbjct: 1183 LQEFDLEIRDRKGTENQIADHLSRLESPAKTDEPNLINDNFPDEQLLAIVASDVPWYADI 1242

Query: 241  VNYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSC 300
            VNYL C   P + +AQQKKK  + ++ Y WD+P+L++   D+ILRRCVP+ E + IL  C
Sbjct: 1243 VNYLTCGIIPFDLSAQQKKKFLFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQC 1302

Query: 301  HEALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNSML 360
            H + YGGHF G RTAAK+LQSG                      TGNIS R+EMPLN++L
Sbjct: 1303 HASPYGGHFHGDRTAAKILQSGFFWPNLFKDAHSFVANCDRCQRTGNISRRHEMPLNTIL 1362

Query: 361  EVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSR 420
            EVELFDVW IDFMGPF PS GN YILVAVDYVSKWVEAAA   ND+  V  F+KK IF+R
Sbjct: 1363 EVELFDVWGIDFMGPFIPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVNFIKKNIFTR 1422

Query: 421  FRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKV 480
            F TPRAIISD GTHF NR    LL+K+ V H+++T YHPQT+GQ E++N EIK ILE K 
Sbjct: 1423 FGTPRAIISDGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNREIKRILE-KT 1453

Query: 481  VSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLNLD 518
            VS++RKDW+++LDEALWAYRTA+KTPIGMSPY LVFGKACHLP+ELEH A WA++KLN D
Sbjct: 1483 VSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYRLVFGKACHLPVELEHNAYWAIRKLNFD 1453

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BLAST of Clc09G16950 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 540.4 bits (1391), Expect = 1.7e-149
Identity = 286/539 (53.06%), Postives = 343/539 (63.64%), Query Frame = 0


Query: 1    MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
            MCDAS+ A+GAVLGQR++K+   IYYAS+TLN +Q NYTTTEKEMLA+VFA DKF     
Sbjct: 1185 MCDASDFALGAVLGQRRDKLFRAIYYASRTLNEAQLNYTTTEKEMLAVVFACDKF----- 1244

Query: 61   RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                     RS   C                             
Sbjct: 1245 -------------------------RSYLIC----------------------------- 1304

Query: 121  HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                         +KV +++DH+A++YL +KK+AKPRLIRW+LL
Sbjct: 1305 -----------------------------TKVIVFTDHAALRYLFSKKDAKPRLIRWILL 1364

Query: 181  LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMNAESQEPWYADIV 240
            LQEFDLE++D+KG+EN VADHLSRLE +EV+     I+E  PDE +   E + PWYADIV
Sbjct: 1365 LQEFDLEVRDKKGSENSVADHLSRLEQEEVRPDLV-IQEAFPDEQLFACEIKLPWYADIV 1424

Query: 241  NYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSCH 300
            N+L C   P +    Q+KK  +  K+Y WDEP L++   D I+RRCVP+ E  +IL  CH
Sbjct: 1425 NFLACKVLPPDLTYHQRKKFLHDVKYYLWDEPLLFKRCPDQIIRRCVPEEEMQAILHHCH 1484

Query: 301  EALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNSMLE 360
             + YGGHFG  RTAAKVLQSG                       GNIS R E+PL ++LE
Sbjct: 1485 SSSYGGHFGVTRTAAKVLQSGFFWPSIFRDSYTLVKTCDRCQRMGNISRRQELPLKNILE 1544

Query: 361  VELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRF 420
            VELFDVW IDFMGPFPPS G  YIL+AVDYVSKWVEA A   NDA  V KFL K IF+RF
Sbjct: 1545 VELFDVWGIDFMGPFPPSFGFVYILLAVDYVSKWVEAIATTTNDAKVVLKFLHKNIFTRF 1604

Query: 421  RTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVV 480
             TPRAIISDEGTHF N++  NLL+K+ V H++A AYHPQTNGQAEI+N EIK+ILE K V
Sbjct: 1605 GTPRAIISDEGTHFCNKLFDNLLSKYGVKHKIALAYHPQTNGQAEISNREIKNILE-KTV 1633

Query: 481  STSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLNLD 518
            +T+RKDW +KLD+ALWAYRTAFKTPIGMSPY LVFGKACHLP+ELEHKA WA+KK NLD
Sbjct: 1665 NTNRKDWAKKLDDALWAYRTAFKTPIGMSPYRLVFGKACHLPVELEHKAYWAVKKFNLD 1633

[Close]

BLAST of Clc09G16950 vs. NCBI nr
Match: XP_042009195.1 (uncharacterized protein LOC121757770 [Salvia splendens])

HSP 1 Score: 533.9 bits (1374), Expect = 1.6e-147
Identity = 284/544 (52.21%), Postives = 348/544 (63.97%), Query Frame = 0


Query: 1    MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
            MCDAS++AVGAVLGQR++K++H +YYASK LN +Q NYTTTEKEMLA+V+A +KF     
Sbjct: 1243 MCDASDYAVGAVLGQRRDKVLHAVYYASKVLNEAQLNYTTTEKEMLAVVYAFEKFR---- 1302

Query: 61   RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                                             LL         
Sbjct: 1303 -----------------------------------------------AYLL--------- 1362

Query: 121  HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                        G+KV +++DHSAIKYLM KK+AKPRL+RW+LL
Sbjct: 1363 ----------------------------GTKVVVFTDHSAIKYLMNKKDAKPRLVRWILL 1422

Query: 181  LQEFDLEIKDRKGTENQVADHLSRLENKE--VQESWSDIEEQLPDEHIMNAESQE---PW 240
            LQEFD+EIKD+KGTEN VADHLSRLE  E    E    I E+ PDE ++  E++E   PW
Sbjct: 1423 LQEFDVEIKDKKGTENLVADHLSRLEGLEETEDERKKRINEKFPDEQVLQVEARETYVPW 1482

Query: 241  YADIVNYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSI 300
            +A++ NYLV    PE  ++ QKKK    ++ Y W++P+L+R+ SD ++RRCV ++E   I
Sbjct: 1483 FANLANYLVTGIIPEGLSSNQKKKFLSDTRTYVWEDPFLFRICSDGVIRRCVGEHEHLQI 1542

Query: 301  LRSCHEALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPL 360
            L +CH++LYGGHFG +RTA KVLQSG                       GNIS RNEMP+
Sbjct: 1543 LSACHDSLYGGHFGARRTAFKVLQSGFFWPSIFKDAKAYVERCDSCQRAGNISWRNEMPM 1602

Query: 361  NSMLEVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQ 420
            N++ EVELFDVW IDFMGPFP S G QYILVAVDYVSKWVEA A A NDA  V KF+K  
Sbjct: 1603 NNIHEVELFDVWGIDFMGPFPKSNGQQYILVAVDYVSKWVEAVASATNDAKVVLKFIKNH 1662

Query: 421  IFSRFRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSIL 480
            IF+RF TPRAIISD GTHF N++  NLL K+ V H+VAT YHPQT+GQ E++N EIK +L
Sbjct: 1663 IFNRFGTPRAIISDGGTHFCNKLFENLLGKYGVQHKVATPYHPQTSGQVEVSNREIKRVL 1697

Query: 481  EKKVVSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKK 518
            E KVV  SRKDW +KLD+ALWAYRTA+KTPIG SPY LVFGKACHLP+ELEHKA WA++K
Sbjct: 1723 E-KVVRPSRKDWAQKLDDALWAYRTAYKTPIGTSPYKLVFGKACHLPVELEHKAFWALQK 1697

[Close]

BLAST of Clc09G16950 vs. NCBI nr
Match: XP_042003745.1 (uncharacterized protein LOC121752711 [Salvia splendens])

HSP 1 Score: 533.9 bits (1374), Expect = 1.6e-147
Identity = 284/544 (52.21%), Postives = 348/544 (63.97%), Query Frame = 0


Query: 1    MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
            MCDAS++AVGAVLGQR++K++H +YYASK LN +Q NYTTTEKEMLA+V+A +KF     
Sbjct: 1243 MCDASDYAVGAVLGQRRDKVLHAVYYASKVLNEAQLNYTTTEKEMLAVVYAFEKFR---- 1302

Query: 61   RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                                             LL         
Sbjct: 1303 -----------------------------------------------AYLL--------- 1362

Query: 121  HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                        G+KV +++DHSAIKYLM KK+AKPRL+RW+LL
Sbjct: 1363 ----------------------------GTKVVVFTDHSAIKYLMNKKDAKPRLVRWILL 1422

Query: 181  LQEFDLEIKDRKGTENQVADHLSRLENKE--VQESWSDIEEQLPDEHIMNAESQE---PW 240
            LQEFD+EIKD+KGTEN VADHLSRLE  E    E    I E+ PDE ++  E++E   PW
Sbjct: 1423 LQEFDVEIKDKKGTENLVADHLSRLEGLEETEDERKKRINEKFPDEQVLQVEARETYVPW 1482

Query: 241  YADIVNYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSI 300
            +A++ NYLV    PE  ++ QKKK    ++ Y W++P+L+R+ SD ++RRCV ++E   I
Sbjct: 1483 FANLANYLVTGIIPEGLSSNQKKKFLSDTRTYVWEDPFLFRICSDGVIRRCVGEHEHLQI 1542

Query: 301  LRSCHEALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPL 360
            L +CH++LYGGHFG +RTA KVLQSG                       GNIS RNEMP+
Sbjct: 1543 LSACHDSLYGGHFGARRTAFKVLQSGFFWPSIFKDAKAYVERCDSCQRAGNISWRNEMPM 1602

Query: 361  NSMLEVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQ 420
            N++ EVELFDVW IDFMGPFP S G QYILVAVDYVSKWVEA A A NDA  V KF+K  
Sbjct: 1603 NNIHEVELFDVWGIDFMGPFPKSNGQQYILVAVDYVSKWVEAVASATNDAKVVLKFIKNH 1662

Query: 421  IFSRFRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSIL 480
            IF+RF TPRAIISD GTHF N++  NLL K+ V H+VAT YHPQT+GQ E++N EIK +L
Sbjct: 1663 IFNRFGTPRAIISDGGTHFCNKLFENLLGKYGVQHKVATPYHPQTSGQVEVSNREIKRVL 1697

Query: 481  EKKVVSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKK 518
            E KVV  SRKDW +KLD+ALWAYRTA+KTPIG SPY LVFGKACHLP+ELEHKA WA++K
Sbjct: 1723 E-KVVRPSRKDWAQKLDDALWAYRTAYKTPIGTSPYKLVFGKACHLPVELEHKAFWALQK 1697

[Close]

BLAST of Clc09G16950 vs. ExPASy Swiss-Prot
Match: P31792 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-19
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 345 WRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAI 404
           W IDF    P   G +Y+LV VD  S WVEA    +  A+ V+K + ++IF RF  P+ I
Sbjct: 765 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVI 824

Query: 405 ISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKD 464
            SD G  F++++   L     ++ ++  AY PQ++GQ E  N  IK  L K  + T  KD
Sbjct: 825 GSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD 884

Query: 465 WTEKLDEALWAYRTAFKTPIGMSPYALVFG 495
           W   L  AL   R       G++PY +++G
Sbjct: 885 WRRLLSLALLRARNT-PNRFGLTPYEILYG 913

[Close]

BLAST of Clc09G16950 vs. ExPASy Swiss-Prot
Match: P03359 (Gag-Pol polyprotein OS=Woolly monkey sarcoma virus OX=11970 GN=pol PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-19
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 345  WRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAI 404
            W +DF    P   GN+Y+LV +D  S WVEA       A TV K + ++I  RF  P+ +
Sbjct: 1402 WEVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVL 1461

Query: 405  ISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKD 464
             SD G  F+ ++   L T+  ++ ++  AY PQ++GQ E  N  IK  L K  + T  KD
Sbjct: 1462 GSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGXKD 1521

Query: 465  WTEKLDEALWAYRTAFKTP--IGMSPYALVFG 495
            W   L  AL   R    TP   G++PY +++G
Sbjct: 1522 WVALLPLALLRAR---NTPGRFGLTPYEILYG 1550

[Close]

BLAST of Clc09G16950 vs. ExPASy Swiss-Prot
Match: P26810 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-19
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 345  WRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAI 404
            W IDF    P   G +Y+LV VD  S WVEA    K  A  V+K L ++IF RF  P+ +
Sbjct: 1453 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 1512

Query: 405  ISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKD 464
             +D G  F++++   +     V  ++  AY PQ++GQ E  N  IK  L K  ++T  +D
Sbjct: 1513 GTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRD 1572

Query: 465  WTEKLDEALWAYRTAFKTPIGMSPYALVFG 495
            W   L  AL+  R     P G++PY +++G
Sbjct: 1573 WVLLLPLALYRARNT-PGPHGLTPYEILYG 1601

[Close]

BLAST of Clc09G16950 vs. ExPASy Swiss-Prot
Match: P26808 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 GN=pol PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-19
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 345  WRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAI 404
            W IDF    P   G +Y+LV VD  S WVEA    K  A  V+K L ++IF RF  P+ +
Sbjct: 1452 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 1511

Query: 405  ISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKD 464
             +D G  F++++   +     V  ++  AY PQ++GQ E  N  IK  L K  ++T  +D
Sbjct: 1512 GTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRD 1571

Query: 465  WTEKLDEALWAYRTAFKTPIGMSPYALVFG 495
            W   L  AL+  R     P G++PY +++G
Sbjct: 1572 WVLLLPLALYRARNT-PGPHGLTPYEILYG 1600

[Close]

BLAST of Clc09G16950 vs. ExPASy Swiss-Prot
Match: P10272 (Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-19
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 345  WRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFRTPRAI 404
            W IDF    P   G +Y+LV VD  S WVEA    +  A+ V+K + ++IF RF  P+ I
Sbjct: 1446 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVI 1505

Query: 405  ISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVVSTSRKD 464
             SD G  F++++   L     ++ ++  AY PQ++GQ E  N  IK  L K  + T  KD
Sbjct: 1506 GSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD 1565

Query: 465  WTEKLDEALWAYRTAFKTPIGMSPYALVFG 495
            W   L  AL   R       G++PY +++G
Sbjct: 1566 WRRLLSLALLRARNT-PNRFGLTPYEILYG 1594

[Close]

BLAST of Clc09G16950 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 6.2e-150
Identity = 289/540 (53.52%), Postives = 346/540 (64.07%), Query Frame = 0


Query: 1    MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
            MCDAS+ AVGAVLGQRK+KI   IYYASKTLN +Q NYTTTEKE+LA+VFA DKF     
Sbjct: 1003 MCDASDFAVGAVLGQRKDKIFRSIYYASKTLNDAQLNYTTTEKELLAVVFAFDKF----- 1062

Query: 61   RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                     RS                                 
Sbjct: 1063 -------------------------RSYL------------------------------- 1122

Query: 121  HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                        G+KV +Y+DH+AI+YL+ KK+AKPRLIRWVLL
Sbjct: 1123 ---------------------------VGTKVIVYTDHAAIRYLIEKKDAKPRLIRWVLL 1182

Query: 181  LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMN-AESQEPWYADI 240
            LQEFDLEI+DRKGTENQ+ADHLSRLE+    +  + I +  PDE ++    S  PWYADI
Sbjct: 1183 LQEFDLEIRDRKGTENQIADHLSRLESPAKTDEPNLINDNFPDEQLLAIVASDVPWYADI 1242

Query: 241  VNYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSC 300
            VNYL C   P + +AQQKKK  + ++ Y WD+P+L++   D+ILRRCVP+ E + IL  C
Sbjct: 1243 VNYLTCGIIPFDLSAQQKKKFLFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQC 1302

Query: 301  HEALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNSML 360
            H + YGGHF G RTAAK+LQSG                      TGNIS R+EMPLN++L
Sbjct: 1303 HASPYGGHFHGDRTAAKILQSGFFWPNLFKDAHSFVANCDRCQRTGNISRRHEMPLNTIL 1362

Query: 361  EVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSR 420
            EVELFDVW IDFMGPF PS GN YILVAVDYVSKWVEAAA   ND+  V  F+KK IF+R
Sbjct: 1363 EVELFDVWGIDFMGPFIPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVNFIKKNIFTR 1422

Query: 421  FRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKV 480
            F TPRAIISD GTHF NR    LL+K+ V H+++T YHPQT+GQ E++N EIK ILE K 
Sbjct: 1423 FGTPRAIISDGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNREIKRILE-KT 1453

Query: 481  VSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLNLD 518
            VS++RKDW+++LDEALWAYRTA+KTPIGMSPY LVFGKACHLP+ELEH A WA++KLN D
Sbjct: 1483 VSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYRLVFGKACHLPVELEHNAYWAIRKLNFD 1453

[Close]

BLAST of Clc09G16950 vs. ExPASy TrEMBL
Match: A0A803R2M6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 5.4e-146
Identity = 293/542 (54.06%), Postives = 335/542 (61.81%), Query Frame = 0


Query: 1   MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
           MCDAS++A+GAVLGQR +K+   IYYASKTLN +Q NY TTEKEMLAIVFA DKF +P  
Sbjct: 1   MCDASDYAIGAVLGQRVDKVFRTIYYASKTLNDAQLNYATTEKEMLAIVFACDKF-RPYL 60

Query: 61  RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                       G+KV +Y+DHSAIKYLM KK+AKPRLIRWVLL
Sbjct: 121 ---------------------------IGNKVIVYTDHSAIKYLMTKKDAKPRLIRWVLL 180

Query: 181 LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWS-DIEEQLPDEHIMNAES--QEPWYA 240
           LQEFDL+IKD+KGTEN VADHLSRLE +E Q +    I EQ PDE + +       PWYA
Sbjct: 181 LQEFDLDIKDKKGTENLVADHLSRLELEESQNTKEVQINEQFPDEQLFSVRESLMVPWYA 240

Query: 241 DIVNYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILR 300
           D VN+L  N  P E + QQ KK   + K Y W+EP LY+  +D I+RRCVP+ E +SIL 
Sbjct: 241 DYVNFLAANITPPELSRQQLKKFFSEVKHYYWEEPILYKHCADQIIRRCVPEEEMYSILN 300

Query: 301 SCHEALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNS 360
            CH    GGHF G RTAAKVLQSG                      TGNIS RNEMPL  
Sbjct: 301 HCHALPCGGHFSGTRTAAKVLQSGFFWPTLFKDASTFVKACDRCQRTGNISRRNEMPLTG 360

Query: 361 MLEVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIF 420
           +LEVELFDVW IDFMGPFP S  N YIL+AVDYVSKWVEAAA   ND  TV +FL+K IF
Sbjct: 361 ILEVELFDVWGIDFMGPFPSSFSNLYILLAVDYVSKWVEAAATPANDGKTVLRFLQKNIF 420

Query: 421 SRFRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEK 480
           +RF TPRAIISDEG+HF N+    LL+++ V HR A  YHPQ+NGQAEI+N EIK ILE 
Sbjct: 421 TRFGTPRAIISDEGSHFCNKQFEALLSRYGVRHRTALPYHPQSNGQAEISNREIKMILE- 453

Query: 481 KVVSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLN 518
           K V  SRKDW+ KLD+ALWAYRTAFKTPIGMSPY LVFGKACHLP+ELEHKA WAMK LN
Sbjct: 481 KTVQRSRKDWSRKLDDALWAYRTAFKTPIGMSPYRLVFGKACHLPVELEHKAYWAMKTLN 453

[Close]

BLAST of Clc09G16950 vs. ExPASy TrEMBL
Match: A0A6P6GGL5 (LOW QUALITY PROTEIN: uncharacterized protein LOC112492878 OS=Ziziphus jujuba OX=326968 GN=LOC112492878 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 3.9e-144
Identity = 285/542 (52.58%), Postives = 336/542 (61.99%), Query Frame = 0


Query: 1    MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
            MCDAS++A+GAVLGQ K+K +H IYYAS+TLN +Q NY TT+KEM AIVFA DKF     
Sbjct: 904  MCDASDYAIGAVLGQXKDKKLHVIYYASRTLNDAQLNYATTQKEMXAIVFAFDKF----- 963

Query: 61   RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                                                      +A
Sbjct: 964  ----------------------------------------------------------RA 1023

Query: 121  HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
            +                           GSK  +Y+DHS IKYLM+KK +KPRLIRWVLL
Sbjct: 1024 Y-------------------------LXGSKTIVYTDHSTIKYLMSKKESKPRLIRWVLL 1083

Query: 181  LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMNAES--QEPWYAD 240
            LQEFDLEI D+KG EN VADHLSRLE  E +E   DIEE  PDE +   +     PWYAD
Sbjct: 1084 LQEFDLEILDKKGVENLVADHLSRLELSEEKEE-RDIEECFPDEKVFKVDGMFDVPWYAD 1143

Query: 241  IVNYLVCNQWPEEF-NAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILR 300
            IVNYLV N  P       +K K   KS++Y WD+PYL++  +D I+RRCV + ET SI++
Sbjct: 1144 IVNYLVTNVMPPSLEKPYEKHKFLKKSRYYFWDDPYLFKKCADGIIRRCVAREETMSIIK 1203

Query: 301  SCHEALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNS 360
            SCH + YGGHFG ++T AK+L SG                      TGNIS +NEMPL +
Sbjct: 1204 SCHSSEYGGHFGTRKTIAKILNSGFYWPSMFKDTNIYVQGCDRCQRTGNISRKNEMPLKN 1263

Query: 361  MLEVELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIF 420
            +LEVELFDVW IDFMGPFP SCGN+YILVAVDYVSKWVEA+    NDA  V KFLKK IF
Sbjct: 1264 ILEVELFDVWGIDFMGPFPSSCGNKYILVAVDYVSKWVEASVLPTNDARVVVKFLKKYIF 1323

Query: 421  SRFRTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEK 480
            +RF TPRAIISD GTHF N+   +LL K+ V H++AT YHPQT+GQ EI+N EIK ILE 
Sbjct: 1324 TRFGTPRAIISDGGTHFCNKQFESLLAKYGVRHKIATPYHPQTSGQVEISNREIKRILE- 1355

Query: 481  KVVSTSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLN 518
            K V+ SRKDW+ KLD+ALWAYRTA+KTPIG SPY LVFGK CHLP+ELEHKA WA K LN
Sbjct: 1384 KTVNASRKDWSLKLDDALWAYRTAYKTPIGTSPYKLVFGKECHLPVELEHKAYWATKFLN 1355

[Close]

BLAST of Clc09G16950 vs. ExPASy TrEMBL
Match: A0A2K3LHD8 (Integrase catalytic domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g033907 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 3.9e-144
Identity = 281/539 (52.13%), Postives = 337/539 (62.52%), Query Frame = 0


Query: 1   MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
           MCDAS+ AVGAVLGQRK+K++H IYYAS  LN +Q NY TTEKE+LA+V+A DKF     
Sbjct: 24  MCDASDIAVGAVLGQRKDKLLHVIYYASHVLNPAQLNYATTEKELLAVVYAFDKF----- 83

Query: 61  RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                                    RS                      LL         
Sbjct: 84  -------------------------RS---------------------YLL--------- 143

Query: 121 HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                       GSKV +Y+DH+A++YL AK+ +KPRL+RW+LL
Sbjct: 144 ----------------------------GSKVIVYTDHAALRYLFAKQESKPRLLRWILL 203

Query: 181 LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMNAESQEPWYADIV 240
           LQEFDLEI+D+KG+EN VADHLSRLE     E    I++   DEHI+ A +  PW+AD  
Sbjct: 204 LQEFDLEIRDKKGSENTVADHLSRLEKVVETEEERAIQDLFADEHIL-AVTVAPWFADFA 263

Query: 241 NYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSCH 300
           NY+V    P +F  QQ+KK  +  KFY WDEP+LY+   D +LRRCVP+ E   +L  CH
Sbjct: 264 NYMVGRTIPSDFTPQQRKKFLHDCKFYVWDEPFLYKRGVDGLLRRCVPEGEQEKVLWHCH 323

Query: 301 EALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNSMLE 360
           ++ YGGHF G RTAAKVLQSG                      TGNIS RNEMP N +LE
Sbjct: 324 DSSYGGHFSGDRTAAKVLQSGLFWPTLFKDAFTYVKRCDRCQRTGNISKRNEMPQNPILE 383

Query: 361 VELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRF 420
           VE+FDVW IDFMGPFP S    YILVAVDYVSKWVEA A   NDA  V  FLK+ IFSRF
Sbjct: 384 VEIFDVWGIDFMGPFPSSYSKTYILVAVDYVSKWVEAIATHTNDAQVVVAFLKRNIFSRF 443

Query: 421 RTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVV 480
             PRA+ISDEGTHF+NR +  LL K+NV HR+AT YHPQT+GQ E++N +IK ILE K V
Sbjct: 444 GVPRALISDEGTHFLNRKMEALLKKYNVHHRIATPYHPQTSGQVEVSNRQIKQILE-KTV 472

Query: 481 STSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLNLD 518
           ++SRKDW+ KLD+ALWAYRTAFKTPIGMSP+ +V+GKACHLPLELEHKA+WA K LN D
Sbjct: 504 NSSRKDWSVKLDDALWAYRTAFKTPIGMSPFQIVYGKACHLPLELEHKALWATKFLNFD 472

[Close]

BLAST of Clc09G16950 vs. ExPASy TrEMBL
Match: A0A251UM01 (Putative reverse transcriptase domain, Ribonuclease H-like domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0135911 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 6.6e-144
Identity = 277/538 (51.49%), Postives = 340/538 (63.20%), Query Frame = 0


Query: 1   MCDASNHAVGAVLGQRKEKIMHPIYYASKTLNASQENYTTTEKEMLAIVFAVDKFYKPRR 60
           MCDASNHAVGAVLGQRK+++ H IYYASKTL+ +Q NY+TTEKE+LAIVFA++KF     
Sbjct: 431 MCDASNHAVGAVLGQRKDRVPHVIYYASKTLDHAQSNYSTTEKELLAIVFALEKF----- 490

Query: 61  RRKRKRRGKQFCCSGSIAERARDRERSKYRCNAKRLCVSRFSLEYCWVSLLSVEGLFVKA 120
                   +Q+                                                 
Sbjct: 491 --------RQYLL----------------------------------------------- 550

Query: 121 HGNVDVIEYGAEEQNVKALDSCKFVKHDGSKVTIYSDHSAIKYLMAKKNAKPRLIRWVLL 180
                                       G+KV +YSDH+A++YLM KK+AKPRLIRWVLL
Sbjct: 551 ----------------------------GTKVIVYSDHAALRYLMTKKDAKPRLIRWVLL 610

Query: 181 LQEFDLEIKDRKGTENQVADHLSRLENKEVQESWSDIEEQLPDEHIMNAESQEPWYADIV 240
           LQEFDLEI+D+ G +N VADHLSR+ N E       + +  PDEH+  AE   PWYADIV
Sbjct: 611 LQEFDLEIRDKSGKQNLVADHLSRIINNEEP---MPLNDSFPDEHLFAAEVTTPWYADIV 670

Query: 241 NYLVCNQWPEEFNAQQKKKLQYKSKFYCWDEPYLYRLSSDHILRRCVPKYETHSILRSCH 300
           NYLV N +P E +  QK K++ +++ Y WDEPYL++  +D ++RRCV K E  SIL  CH
Sbjct: 671 NYLVTNTFPFELSRAQKDKIKKEARRYVWDEPYLWKYCADQVIRRCVDKSEVPSILDFCH 730

Query: 301 EALYGGHFGGQRTAAKVLQSG----------------------TGNISNRNEMPLNSMLE 360
               GGHFG +RTA KVL+SG                      TGN+S+R++MPL  +L 
Sbjct: 731 SQACGGHFGPKRTAHKVLESGFFWPTIFLDSYMFCKSCERCQKTGNLSSRDQMPLTPILV 790

Query: 361 VELFDVWRIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRF 420
            E+FDVW IDFMGPFP S GN YIL+AVDYVSKWVEA A   ND+  VS F+K  IFSRF
Sbjct: 791 CEIFDVWGIDFMGPFPSSFGNVYILLAVDYVSKWVEAKATRTNDSKVVSGFIKANIFSRF 850

Query: 421 RTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNGQAEITNWEIKSILEKKVV 480
            TP+A ISD G+HF NR I  L  K+ V+HRV+TAYHPQTNGQAEI+N EIKSILE K V
Sbjct: 851 GTPKAFISDRGSHFCNRTIEALFKKYGVAHRVSTAYHPQTNGQAEISNREIKSILE-KTV 876

Query: 481 STSRKDWTEKLDEALWAYRTAFKTPIGMSPYALVFGKACHLPLELEHKAIWAMKKLNL 517
           + +RKDW+ +LD+ALWAYRTA+KTPIGMSP+ LVFGKACHLP+ELEHKA WA+K+ NL
Sbjct: 911 NPNRKDWSLRLDDALWAYRTAYKTPIGMSPFRLVFGKACHLPVELEHKAFWAIKQFNL 876

The following BLAST results are available for this feature:

BLAST of Clc09G16950 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833161.1	2.4e-164	85.97	DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]	[more]
PIM97577.1	1.3e-149	53.52	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]
XP_023874613.1	1.7e-149	53.06	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_042009195.1	1.6e-147	52.21	uncharacterized protein LOC121757770 [Salvia splendens]	[more]
XP_042003745.1	1.6e-147	52.21	uncharacterized protein LOC121752711 [Salvia splendens]	[more]

BLAST of Clc09G16950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31792	1.3e-19	36.00	Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 ...	[more]
P03359	1.3e-19	36.18	Gag-Pol polyprotein OS=Woolly monkey sarcoma virus OX=11970 GN=pol PE=3 SV=2	[more]
P26810	1.7e-19	36.00	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol...	[more]
P26808	1.7e-19	36.00	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 G...	[more]
P10272	2.2e-19	36.00	Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 ...	[more]

BLAST of Clc09G16950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9FWY3	6.2e-150	53.52	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=...	[more]
A0A803R2M6	5.4e-146	54.06	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6P6GGL5	3.9e-144	52.58	LOW QUALITY PROTEIN: uncharacterized protein LOC112492878 OS=Ziziphus jujuba OX=...	[more]
A0A2K3LHD8	3.9e-144	52.13	Integrase catalytic domain-containing protein OS=Trifolium pratense OX=57577 GN=...	[more]
A0A251UM01	6.6e-144	51.49	Putative reverse transcriptase domain, Ribonuclease H-like domain protein OS=Hel...	[more]

BLAST of Clc09G16950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 250..321 e-value: 5.2E-7 score: 31.8
None	No IPR available	GENE3D	3.10.20.370		coord: 1..60 e-value: 1.5E-5 score: 26.9
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 110..320
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 322..487
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 322..487
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 110..320
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 1..205 e-value: 9.86055E-43 score: 146.098
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 148..184 e-value: 1.1E-6 score: 28.9
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 2..56 e-value: 4.1E-18 score: 65.2
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 343..436 e-value: 5.4E-12 score: 45.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 328..496 score: 23.026962
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 338..515 e-value: 1.5E-51 score: 176.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..61
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 341..490

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G16950.1	Clc09G16950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding