Clc09G16820 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G16820
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glycine-rich RNA-binding protein like
Location	ClcChr09: 26578180 .. 26582612 (-)
RNA-Seq Expression	Clc09G16820
Synteny	Clc09G16820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCAATCGATCATGCCAAACAGTGAATATATCTGGATTCATGAACTTCAGGTTCATTGTTGCATATGTTTCAATTATGCGTATATGTGTATAATATAATCTAGAAGAAAAAACAGACAATGTTTCCAATATACGTTTTTCATGTGAAACAATAGATGTAATATAGAGATATTTTATATTATTTTTATTGTTAGTTTCAACCTGATAACCATTTTGACGTATATCTTTGAAACTCATTAGATTTCTTTTCAATTTACTAGAGAACAAAACATTAATAATTGTGAATTTTGTTCATCTAGGCAAAATAAGGACTTGTTTTTCCAAAACCTTCAATCAAGCTTGCAAAACCTAATATTATATTGACATTTGGTTCTCAAATATTGTCAATTTAGAAAAATATTTTCTACTTTTAAGTATTGTGTGCATAGTTACACTATCTGCCAAGCATAAGTTTTCATTATTCATCTTTGAGTATGCCAAAATATGAGAAATGTCCATGATTCTTCATTATAAAAGAAAAAAAAATGATTACTTTAAGTCTCAAAATTAAAGACAAAAATTGAAATATAAATATTCAATATTAACTTACAAATGTAGAAGGAAAAAGAACTAAAACATAAAACAATATTAATTTTGGACATTATCATAATTAAATGAAGTATTTGCTACTCCTTCAATAACATTAAGTTTCTCTACAGGAGACTAAAAAAAATCAGCAACATCTAAATGTGTCATGCTGGAAGGGTCAAATACATCATCTTGATATGCAAAGTTTGTCTTCATATTTTTTTCCTTTCTCCTTCAATGAGGTTTGATAGAGATCACCGAAGTGTTTGGATGTACGACAAATACGAGCCCAATGCCCTTTCATACCACATCGGAAGCATTGATTTTCTACACTTTTAGAGCTCTTATTTTATGGGATTCTTACTCTATGATTATTAATATTTATGGTTTTCTTGAAATCTTAATGATTATTAGTACAAAAAGAAAAATTATTTTTTCCTCTACAGCAGTCATGACCTCAACCATGACTTCAACCTTGATCATGATTATTTTAAATTACAACATTCGCTTCTAGGAATGATGTTGTGAGATTCTTGATTCATTTATTAATAACTCATTATTTTGTTCAATCACAAGAAGACATGATAGAAGCTCAAAATATTTTTTAAAACCTCTTTCTCGATATTGCTGTTGCAGGAGCATATTCGAAACATGAAATGTGGAAAATGTTTTCTCTAATATATCTTCATCAGTAATTTTTTCTCCACATAACAACAATTTTGAACTAATTTTAAATAATGCGAAATTAATAATCACTTATTGATTTAAAATCTTACAATCTTAGGTTCATCCAAGCATAACGAGTTTTAGGAAGAATTACTGTTTTTTTATGATCGTACCTTTCTTTTAAACTTTGCCATAGGATATAGGGATCTATTACCGTAAGATATTCAATCTTTAGTTCCTCATAAAGATGATGTCGAAGGAAAATCATGGCTTTTGCCTTTTCTTGACTAGAAGTCGTATTTCTTTATTTAATTGTTTCTACAAAATTCATGGTATCAAAATGAATTTTAGCATCAAGCACCCATGATAAATAATCATTACCATTGATATAAAGAGCTGGAAACTCTAATTTGGTTAGACTTGTCATGGTAAAACAATAAAAAAAAAAGTATTTAAATTAGAAATTTAATAAACATATCAAACAAGCATTCTAAATAATGTAGGTATTTAGCATATGTTGTATTATGTTTTTTTTAAAGTATATATCCAATATAAATAATATATTCAATATATATATGTATTGTAAACATAATATTTATATAAAAATAATAATAATGAATGACATTGTACATAATACAAATTGCAACAATATTAATATATAATGATTCAAAACATACATGCAAATAGTAATCTATTGCGATCTATCGCAGATAGACTATGTATTTTGCTATTAGTTGTAAATATTTTCAACGATTTTGTCATTTAAGATAATTTTTCTGTTTTAATTTAGGTTTAGGAAGTATATATATTCATTTGTTTGTTTATTTAAGTTTTGTGAGTAAAAAAAAGAAAAAAAAACCTAAGTTTCCTTTATTTAAGTTTTACAATTATAAAGACTTTTTGTTATTGTTCCAAACTAAAACTTTAAAATTTGGTAGTTTCAATCAAAAATTCTGATATGAATTTGGGCCAGAAGTTATTAGGCCCAGAAAGAGAGGGAAGTTCACTAAAATGACCCACCGTGATCATTCATAAATCAAAGCATCTTCGAAGGTCTTCGGTTCGTTGACTGGCTCTTTGCCCTACAACCAGTTTAACCATCTCACCCTCACTTTGCCTTCTCCATCTTTTAGGTTCTCTCGCTACGGAATCCAATTCCTAGGGCTTCCCTTCTTCATAAATTGTAAGCTCAATTCCGCCTCTAACCTTTTTTCTCTCTTAATTTTATGCTTTTGTTATTTCAATCTTCTGGATAAGAGTATCAAATTCATATATGTCCAATTCCTTAATCTGCTTAATTGTTGTCTTTTGATTCTTCGGATCGAGAAAGTTTTGAGTATTTTCTTCTCTTTTAAATCTGTTCAATTTCAATAAGTTAATTACGGGGTTTTAATGCCCGGGTTCTTTTCGAATTCTTCGCTACTGTGCCCACTTTGGGAAATTCGATTGATTTGATTACGGTTCTTCGATGAAGCTCTCATAATGGCTGACGAGGTGGAGTATCGCTGCTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTCTCAAAGAGGCGTTTGAAAAGTTTGGCCATCTTGTCGAGGCCAAGGTATCTGATTTGTTTCTCTTGTGCTTATTGTTCTGTACTCCTTTTTTAGCTGATAATCGTTTTAATCCTTTCTCATGTAATACGGTTCTTCCATTTATATTCATATTTCTATTTCGGATCGAAATTGTTTGCCACTGGGTCTTCCGATTTAGTCCTGTCACTCTCTCTCTCTTTGTAATAAGAAAAAAAAAAAGGGAAAAAGAACTCCTTCGATGATAATTCTTCTATTGATTAATGTTTACAGATAGAAATGTGAGAAATGTAAGGTTGGTGCTTGTAGAATTTGATAATATTCGATGACAGCATGCTTAAGGATTTTCATAGTCGCGTCACCTGTATGATTTTGACAATGCATCATCGGTTTCACAGGTAGTTGTTGACAAATTTTCTGGGCGCTCCCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGAGTATTACAGTTGATAAGGCTCAACCAAACCAAGGTTCAGGTAGAGATCATGATGGTGACCGTCCACGTGGTGGCCGTGATCGAGGTCGAGATTCTGGTGGTGCACGTGGATCTAACAGTGGAGATTGCTTTAAATGTGGGAAACCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGGTATGGTGGTAGGGATGACAAATATAGTGGTGGTGGTGGCGGCAGTGGTCGATATGGTCCGGACCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGGTAGTGGTGACCGAGGAGGTTCGGGAAGTGATCGATATAGCCGTGACCGCTCTGGGCCGTATGAACGACGCGGTTCTGGTGGTTTTCGTTCTGGATAGAATTATGACTTATCTTGTAGGTTGTGTAACTCAACTCAACTTTACTGGTTCTTTATGGCTGCCTTGTACTGATGACTTGTACTGTCTCCCCATTAAATGCAGCTTACATGGTGGGATCTTGCTGTTATGTCCTGCAGAATGTTAAATGTTCCTTTCTACAGGTTGTCTCACGTACAGTTCAGAGTTCTGAAGTGCAGAACTTGACGTTAATATTGAGATGTTTGTGTTCCTATGTGATGAATTTGGTATCTTGGTACAGTGGTGTGGTGTCTAATGTGTTCTTGACATATTCATTCGAATCTGGTTTTATGATGTTTGAGTGCCCTAGTAGCTGCTGCATTACTTGTGACACACATACACAGGGAATTTCAATAACTGCTGCACCATTTCATTTTGAAAATTTTCTTTTGAATACAACTAGACCTGGTTTTTGATGTTGGATGGGGTATTGAGAGGACCTTGCTTTTGATAAGCTGCAACTAGAGATCTGTGTCCCGACCTGGAAACTTTGAGGTGAAATCCCCTTTTCAGAACGTTGTTCCCATTGTCTTATAAATTCCACAGGAGTTTACAGGTAATTACTCTTTTTTCTGTTGCTTTGCTGCCCTAATATCACATATCACCTATGTATTGTGTTATATTGATGTTGTGAACTTTTTGGCAGCATCCTTCCTTTTTATGGTCTTATTGGGTGCATAATACAGTTTCTTGTTAATTGGGCGCTTTAA

mRNA sequence

ATGACCCAATCGATCATGCCAAACAGTGAATATATCTGGATTCATGAACTTCAGGTCTTCGGTTCGTTGACTGGCTCTTTGCCCTACAACCAGTTTAACCATCTCACCCTCACTTTGCCTTCTCCATCTTTTAGGTTCTCTCGCTACGGAATCCAATTCCTAGGGCTTCCCTTCTTCATAAATTCTCTCATAATGGCTGACGAGGTGGAGTATCGCTGCTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTCTCAAAGAGGCGTTTGAAAAGTTTGGCCATCTTGTCGAGGCCAAGGTAGTTGTTGACAAATTTTCTGGGCGCTCCCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGAGTATTACAGTTGATAAGGCTCAACCAAACCAAGGTTCAGGTAGAGATCATGATGGTGACCGTCCACGTGGTGGCCGTGATCGAGGTCGAGATTCTGGTGGTGCACGTGGATCTAACAGTGGAGATTGCTTTAAATGTGGGAAACCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGGGTAGTGGTGACCGAGGAGGTTCGGGAAGTGATCGATATAGCCGTGACCGCTCTGGGCCGTATGAACGACGCGGTTCTGGTGGTTTTCGTTCTGGATAGAATTATGACTTATCTTGTAGCTTACATGGTGGGATCTTGCTGTTATGTCCTGCAGAATGTTAAATGTTCCTTTCTACAGGTTGTCTCACGTACAGTTCAGAGTTCTGAAGTGCAGAACTTGACGTTAATATTGAGATGTTTGTGTTCCTATGTGATGAATTTGGTATCTTGGTACAGTGGTGTGGTGTCTAATGTGTTCTTGACATATTCATTCGAATCTGGTTTTATGATGTTTGAGTGCCCTAGTAGCTGCTGCATTACTTGTGACACACATACACAGGGAATTTCAATAACTGCTGCACCATTTCATTTTGAAAATTTTCTTTTGAATACAACTAGACCTGAACGTTGTTCCCATTGTCTTATAAATTCCACAGGAGTTTACAGCATCCTTCCTTTTTATGGTCTTATTGGGTGCATAATACAGTTTCTTGTTAATTGGGCGCTTTAA

Coding sequence (CDS)

ATGACCCAATCGATCATGCCAAACAGTGAATATATCTGGATTCATGAACTTCAGGTCTTCGGTTCGTTGACTGGCTCTTTGCCCTACAACCAGTTTAACCATCTCACCCTCACTTTGCCTTCTCCATCTTTTAGGTTCTCTCGCTACGGAATCCAATTCCTAGGGCTTCCCTTCTTCATAAATTCTCTCATAATGGCTGACGAGGTGGAGTATCGCTGCTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTCTCAAAGAGGCGTTTGAAAAGTTTGGCCATCTTGTCGAGGCCAAGGTAGTTGTTGACAAATTTTCTGGGCGCTCCCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGAGTATTACAGTTGATAAGGCTCAACCAAACCAAGGTTCAGGTAGAGATCATGATGGTGACCGTCCACGTGGTGGCCGTGATCGAGGTCGAGATTCTGGTGGTGCACGTGGATCTAACAGTGGAGATTGCTTTAAATGTGGGAAACCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGGGTAGTGGTGACCGAGGAGGTTCGGGAAGTGATCGATATAGCCGTGACCGCTCTGGGCCGTATGAACGACGCGGTTCTGGTGGTTTTCGTTCTGGATAGAATTATGACTTATCTTGTAGCTTACATGGTGGGATCTTGCTGTTATGTCCTGCAGAATGTTAAATGTTCCTTTCTACAGGTTGTCTCACGTACAGTTCAGAGTTCTGAAGTGCAGAACTTGACGTTAATATTGAGATGTTTGTGTTCCTATGTGATGAATTTGGTATCTTGGTACAGTGGTGTGGTGTCTAATGTGTTCTTGACATATTCATTCGAATCTGGTTTTATGATGTTTGAGTGCCCTAGTAGCTGCTGCATTACTTGTGACACACATACACAGGGAATTTCAATAACTGCTGCACCATTTCATTTTGAAAATTTTCTTTTGAATACAACTAGACCTGAACGTTGTTCCCATTGTCTTATAAATTCCACAGGAGTTTACAGCATCCTTCCTTTTTATGGTCTTATTGGGTGCATAATACAGTTTCTTGTTAATTGGGCGCTTTAA

Protein sequence

MTQSIMPNSEYIWIHELQVFGSLTGSLPYNQFNHLTLTLPSPSFRFSRYGIQFLGLPFFINSLIMADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCFKCGKPGHFARECPSEGGRGGVVVTEEVREVIDIAVTALGRMNDAVLVVFVLDRIMTYLVAYMVGSCCYVLQNVKCSFLQVVSRTVQSSEVQNLTLILRCLCSYVMNLVSWYSGVVSNVFLTYSFESGFMMFECPSSCCITCDTHTQGISITAAPFHFENFLLNTTRPERCSHCLINSTGVYSILPFYGLIGCIIQFLVNWAL

Homology

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BLAST of Clc09G16820 vs. NCBI nr
Match: XP_038888155.1 (glycine-rich RNA-binding protein RZ1A [Benincasa hispida])

HSP 1 Score: 282.0 bits (720), Expect = 8.0e-72
Identity = 140/144 (97.22%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG----RDRGRDSGGARGSNS 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG    RDRGRDSGGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDSGGARGSNS 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGG 144

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BLAST of Clc09G16820 vs. NCBI nr
Match: XP_008455237.1 (PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo] >XP_016901750.1 PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 4.0e-71
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG----RDRGRDSGGARGSNS 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG    RDRGRD GGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGG 144

[Close]

BLAST of Clc09G16820 vs. NCBI nr
Match: XP_004136860.1 (glycine-rich RNA-binding protein RZ1A [Cucumis sativus] >XP_011658772.1 glycine-rich RNA-binding protein RZ1A [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 4.0e-71
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG----RDRGRDSGGARGSNS 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG    RDRGRD GGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGG 144

[Close]

BLAST of Clc09G16820 vs. NCBI nr
Match: XP_022154392.1 (glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154393.1 glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154394.1 glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154395.1 glycine-rich RNA-binding protein RZ1A [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 9.1e-68
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA+EVEYRCFIGGLSWSTSDR LKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRSLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG---GRDRGRDSGGARGSNSG 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG    RDR RD GG RGSNSG
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120

Query: 185 DCFKCGKPGHFARECPSEGGRGG 205
           DCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGG 143

[Close]

BLAST of Clc09G16820 vs. NCBI nr
Match: XP_023553985.1 (glycine-rich RNA-binding protein RZ1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 3.5e-67
Identity = 129/140 (92.14%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCF 184
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSGRDHDGDRPR GRDRGRD GG RGSN GDCF
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGRDHDGDRPR-GRDRGRDFGGGRGSNGGDCF 120

Query: 185 KCGKPGHFARECPSEGGRGG 205
           KCGKPGHFARECPSEGGRGG
Sbjct: 121 KCGKPGHFARECPSEGGRGG 139

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BLAST of Clc09G16820 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-55
Identity = 111/144 (77.08%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           M+++ EYRCFIGGL+W+TSDRGL++AFEK+GHLVEAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQ-GSGRDHDGDRPRG---GRDRGRDSGGARGSNS 184
           MDEAI AMNGMDLDGR+ITVDKAQP+Q G+GRD+DGDR R     RDR R SGG  G   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG--- 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSE  R G
Sbjct: 121 GDCFKCGKPGHFARECPSESSRDG 141

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BLAST of Clc09G16820 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-26
Identity = 68/153 (44.44%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA +   R F+GGLS   +DR L+ AF +FG +++ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRD--------SGGAR 184
           MDE+I+ M+G D   R I+V++A+P  G   D +    RGGRD G           GG  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRD-DGESHGSRGGRDSGYSIAGKGSFGGGGGG 120

Query: 185 GSNSG--DCFKCGKPGHFARECPSE-GGRGGVV 207
           G   G  +CFKCG+ GH+AR+CPS  GGRGG V
Sbjct: 121 GGRVGEDECFKCGRVGHWARDCPSAGGGRGGPV 152

[Close]

BLAST of Clc09G16820 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.9e-26
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 68  EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 127
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 128 AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCFKCG 187
           AI+ MNG DLDGRSITV++AQ ++GSG    G   RGG   G  SGG  G + G     G
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG---GGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 124

Query: 188 KPGHFARECPSEGGRGG 205
             G         GG GG
Sbjct: 125 GGGRREGGGGYSGGGGG 137

[Close]

BLAST of Clc09G16820 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-25
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 68  EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 127
           +VEYRCF+GGL+W+T +R L+ AF +FG LV++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 5   DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 128 AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCFKCG 187
           AI+ MNG DLDGRSITV++AQ ++GSG    G    GG   G   GG  G   G   + G
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRREGG 124

Query: 188 KPGHFARECPSEGGRGG 205
                     S GG GG
Sbjct: 125 GYSGGGGGYSSRGGGGG 140

[Close]

BLAST of Clc09G16820 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-25
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 68  EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 127
           EVEYRCF+GGL+W+T+D  L++AF +FG + ++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 3   EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRD 62

Query: 128 AIKAMNGMDLDGRSITVDKAQP---------NQGSGRDHDGDRPRGGRDRGRDSG--GAR 187
           AI+ MNG +LDGR+ITV++AQ           +G G  + G    GGR  G   G  G R
Sbjct: 63  AIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGGR 122

Query: 188 GSNSGDCFKCGKPGHFARECPSEGGRGG 205
               G  +  G  G+  R    +GG GG
Sbjct: 123 REGGGGGYGGGGGGYGGRREGGDGGYGG 150

[Close]

BLAST of Clc09G16820 vs. ExPASy TrEMBL
Match: A0A1S3C164 (glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG----RDRGRDSGGARGSNS 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG    RDRGRD GGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGG 144

[Close]

BLAST of Clc09G16820 vs. ExPASy TrEMBL
Match: A0A0A0K5W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG----RDRGRDSGGARGSNS 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGG    RDRGRD GGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGG 144

[Close]

BLAST of Clc09G16820 vs. ExPASy TrEMBL
Match: A0A6J1DLZ2 (glycine-rich RNA-binding protein RZ1A OS=Momordica charantia OX=3673 GN=LOC111021672 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.4e-68
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA+EVEYRCFIGGLSWSTSDR LKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRSLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG---GRDRGRDSGGARGSNSG 184
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG    RDR RD GG RGSNSG
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120

Query: 185 DCFKCGKPGHFARECPSEGGRGG 205
           DCFKCGKPGHFARECPSEGGRGG
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGG 143

[Close]

BLAST of Clc09G16820 vs. ExPASy TrEMBL
Match: A0A6J1HH58 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC111464015 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.7e-67
Identity = 128/140 (91.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCF 184
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDGDRPR GRDRGRD GG RGSN GDCF
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPR-GRDRGRDFGGGRGSNGGDCF 120

Query: 185 KCGKPGHFARECPSEGGRGG 205
           KCGKPGHFARECPSEGGRGG
Sbjct: 121 KCGKPGHFARECPSEGGRGG 139

[Close]

BLAST of Clc09G16820 vs. ExPASy TrEMBL
Match: A0A6J1HVL9 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111467070 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.3e-67
Identity = 128/140 (91.43%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCF 184
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSGRDHDGDRPR GRDRGRD G  RGSN GDCF
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGRDHDGDRPR-GRDRGRDLGAGRGSNGGDCF 120

Query: 185 KCGKPGHFARECPSEGGRGG 205
           KCGKPGHFARECPSEGGRGG
Sbjct: 121 KCGKPGHFARECPSEGGRGG 139

[Close]

BLAST of Clc09G16820 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 218.8 bits (556), Expect = 7.7e-57
Identity = 111/144 (77.08%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           M+++ EYRCFIGGL+W+TSDRGL++AFEK+GHLVEAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQ-GSGRDHDGDRPRG---GRDRGRDSGGARGSNS 184
           MDEAI AMNGMDLDGR+ITVDKAQP+Q G+GRD+DGDR R     RDR R SGG  G   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG--- 120

Query: 185 GDCFKCGKPGHFARECPSEGGRGG 205
           GDCFKCGKPGHFARECPSE  R G
Sbjct: 121 GDCFKCGKPGHFARECPSESSRDG 141

[Close]

BLAST of Clc09G16820 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-27
Identity = 68/153 (44.44%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 65  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 124
           MA +   R F+GGLS   +DR L+ AF +FG +++ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 125 MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRD--------SGGAR 184
           MDE+I+ M+G D   R I+V++A+P  G   D +    RGGRD G           GG  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRD-DGESHGSRGGRDSGYSIAGKGSFGGGGGG 120

Query: 185 GSNSG--DCFKCGKPGHFARECPSE-GGRGGVV 207
           G   G  +CFKCG+ GH+AR+CPS  GGRGG V
Sbjct: 121 GGRVGEDECFKCGRVGHWARDCPSAGGGRGGPV 152

[Close]

BLAST of Clc09G16820 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-27
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 68  EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 127
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 128 AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCFKCG 187
           AI+ MNG DLDGRSITV++AQ ++GSG    G   RGG   G  SGG  G + G     G
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG---GGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 124

Query: 188 KPGHFARECPSEGGRGG 205
             G         GG GG
Sbjct: 125 GGGRREGGGGYSGGGGG 137

[Close]

BLAST of Clc09G16820 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-27
Identity = 65/137 (47.45%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 68  EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 127
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 128 AIKAMNGMDLDGRSITVDKAQP-NQGSGRDHDGDRPRGGRDRGRDSGGARGSNSGDCFKC 187
           AI+ MNG DLDGRSITV++AQ    G G  H G    GG    R+ GG      G     
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGGYSSR 124

Query: 188 GKPGHFARECPSEGGRG 204
           G  G        EGG G
Sbjct: 125 GGGGGSYGGGRREGGGG 141

[Close]

BLAST of Clc09G16820 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-26
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 68  EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 127
           EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 128 AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDRGRDSGGARG--SNSGDCFK 187
           AI+ MNG +LDGR ITV++AQ ++GSG    G   RGG   G  SGG  G     G  + 
Sbjct: 63  AIEEMNGKELDGRVITVNEAQ-SRGSG---GGGGGRGGSGGGYRSGGGGGYSGGGGGGYS 122

Query: 188 CGKPGHFARECPSEGGRGG 205
            G  G + R     G  GG
Sbjct: 123 GGGGGGYERRSGGYGSGGG 137

The following BLAST results are available for this feature:

BLAST of Clc09G16820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888155.1	8.0e-72	97.22	glycine-rich RNA-binding protein RZ1A [Benincasa hispida]	[more]
XP_008455237.1	4.0e-71	96.53	PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo] >XP_016901750.1 ...	[more]
XP_004136860.1	4.0e-71	96.53	glycine-rich RNA-binding protein RZ1A [Cucumis sativus] >XP_011658772.1 glycine-...	[more]
XP_022154392.1	9.1e-68	93.01	glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154393.1 glyc...	[more]
XP_023553985.1	3.5e-67	92.14	glycine-rich RNA-binding protein RZ1A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc09G16820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIN3	1.1e-55	77.08	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
Q8RWN5	1.8e-26	44.44	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
Q03250	6.9e-26	49.64	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P49311	1.5e-25	48.91	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03878	2.0e-25	43.92	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of Clc09G16820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C164	1.9e-71	96.53	glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE...	[more]
A0A0A0K5W4	1.9e-71	96.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1	[more]
A0A6J1DLZ2	4.4e-68	93.01	glycine-rich RNA-binding protein RZ1A OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1HH58	3.7e-67	91.43	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HVL9	8.3e-67	91.43	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Clc09G16820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26420.1	7.7e-57	77.08	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT5G04280.1	1.3e-27	44.44	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	4.9e-27	49.64	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	6.4e-27	47.45	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	2.4e-26	48.20	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 72..145 e-value: 3.2E-27 score: 106.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 74..142 e-value: 6.0E-20 score: 70.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 71..149 score: 19.791824
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 182..198 e-value: 3.5E-6 score: 36.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 183..198 e-value: 1.5E-7 score: 31.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 183..198 score: 11.564723
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 65..178 e-value: 1.1E-31 score: 111.8
None	No IPR available	GENE3D	4.10.60.10		coord: 179..212 e-value: 2.7E-8 score: 36.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..173
None	No IPR available	PANTHER	PTHR15241:SF289	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	coord: 65..205
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 65..205
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 71..180
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 176..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G16820.1	Clc09G16820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding