Clc09G16650 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G16650
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr09: 26293994 .. 26294422 (+)
RNA-Seq Expression	Clc09G16650
Synteny	Clc09G16650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATTGGCAGACAGAACACTTCAATAGTATGCTCGAGGAGTATCTCCGTCACTTTATTGATGCGAGACAGAAAAATTGGGTCCAGATGTTGGATGTAGCTCAGTTTAGCTTTAACAGCCAGAAAAGTTCTTCCACGGGTAAGACACCTTTTGAGATTGTGTGTGGTAGACAACCATTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAATGGAACGAGTCCTCAGAGGTAGCACGTGCATGTTTGGAGAGAGCATCGAAGTGCATGAAGAAGTGGGCAGATATGAAGCGCATGCCCCTCGAGTTCCAATCTAGAGACAAAGTACTGATTAAGCTGCGCCCGAAATAG

mRNA sequence

ATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATTGGCAGACAGAACACTTCAATAGTATGCTCGAGGAGTATCTCCGTCACTTTATTGATGCGAGACAGAAAAATTGGGTCCAGATGTTGGATGTAGCTCAGTTTAGCTTTAACAGCCAGAAAAGTTCTTCCACGGGTAAGACACCTTTTGAGATTGTGTGTGGTAGACAACCATTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAATGGAACGAGTCCTCAGAGGTAGCACGTGCATGTTTGGAGAGAGCATCGAAGTGCATGAAGAAGTGGGCAGATATGAAGCGCATGCCCCTCGAGTTCCAATCTAGAGACAAAGTACTGATTAAGCTGCGCCCGAAATAG

Coding sequence (CDS)

ATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATTGGCAGACAGAACACTTCAATAGTATGCTCGAGGAGTATCTCCGTCACTTTATTGATGCGAGACAGAAAAATTGGGTCCAGATGTTGGATGTAGCTCAGTTTAGCTTTAACAGCCAGAAAAGTTCTTCCACGGGTAAGACACCTTTTGAGATTGTGTGTGGTAGACAACCATTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAATGGAACGAGTCCTCAGAGGTAGCACGTGCATGTTTGGAGAGAGCATCGAAGTGCATGAAGAAGTGGGCAGATATGAAGCGCATGCCCCTCGAGTTCCAATCTAGAGACAAAGTACTGATTAAGCTGCGCCCGAAATAG

Protein sequence

MLGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

Homology

[Close]

BLAST of Clc09G16650 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1301 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1360

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1361 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1420

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1421 KKRRPLEFRAGDQVLIKLRPE 1441

[Close]

BLAST of Clc09G16650 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. NCBI nr
Match: TYK28713.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 6    LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTP 65
            +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 66   FEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWADMKRM 125
            FEIV    P +S +    ++ K+ +    ++E  +  +  +  L   +  MKK+ DMK  
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 126  PL-EFQSRDKVLIK 139
             + EFQ  D V++K
Sbjct: 1191 EIEEFQPGDLVMVK 1201

[Close]

BLAST of Clc09G16650 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 6    LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTP 65
            +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 66   FEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWADMKRM 125
            FEIV    P +S +    ++ K+ +    ++E  +  +  +  L   +  MKK+ DMK  
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 126  PL-EFQSRDKVLIK 139
             + EFQ  D V++K
Sbjct: 1191 EIEEFQPGDLVMVK 1201

[Close]

BLAST of Clc09G16650 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 6    LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTP 65
            +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 66   FEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWADMKRM 125
            FEIV    P +S +    ++ K+ +    ++E  +  +  +  L   +  MKK+ DMK  
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 126  PL-EFQSRDKVLIK 139
             + EFQ  D V++K
Sbjct: 1191 EIEEFQPGDLVMVK 1201

[Close]

BLAST of Clc09G16650 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 6    LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTP 65
            +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 66   FEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWADMKRM 125
            FEIV    P +S +    ++ K+ +    ++E  +  +  +  L   +  MKK+ DMK  
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 126  PL-EFQSRDKVLIK 139
             + EFQ  D V++K
Sbjct: 1191 EIEEFQPGDLVMVK 1201

[Close]

BLAST of Clc09G16650 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 6    LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTP 65
            +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 66   FEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWADMKRM 125
            FEIV    P +S +    ++ K+ +    ++E  +  +  +  L   +  MKK+ DMK  
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 126  PL-EFQSRDKVLIK 139
             + EFQ  D V++K
Sbjct: 1191 EIEEFQPGDLVMVK 1201

[Close]

BLAST of Clc09G16650 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

[Close]

BLAST of Clc09G16650 vs. ExPASy TrEMBL
Match: A0A5D3B7E7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00360 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 105/141 (74.47%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 2    LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSST 61
            LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 62   GKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLERASKCMKKWAD 121
            G++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW +++++ARA LE+ASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 122  MKRMPLEFQSRDKVLIKLRPK 143
             KR PLEF++ D+VLIKLRP+
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPE 1445

The following BLAST results are available for this feature:

BLAST of Clc09G16650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067557.1	1.6e-54	74.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.6e-54	74.47	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	1.6e-54	74.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	1.6e-54	74.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28713.1	1.6e-54	74.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Clc09G16650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	8.2e-09	32.09	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	8.2e-09	32.09	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	8.2e-09	32.09	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	8.2e-09	32.09	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	8.2e-09	32.09	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Clc09G16650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4R1	7.8e-55	74.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	7.8e-55	74.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	7.8e-55	74.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	7.8e-55	74.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3B7E7	7.8e-55	74.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Clc09G16650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..118 e-value: 9.0E-17 score: 63.0
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 3..108
None	No IPR available	PANTHER	PTHR46148:SF35	ZINC FINGER, CCHC-TYPE-RELATED	coord: 3..108
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..73 score: 9.499511
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G16650.1	Clc09G16650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding