Clc09G16366 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G16366
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCyclopropane-fatty-acyl-phospholipid synthase
LocationClcChr09: 25483366 .. 25484722 (+)
RNA-Seq ExpressionClc09G16366
SyntenyClc09G16366
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGAAGCTGTTGGCCATGAATTCATGGAAGACTTTTTTGGTTCTTGTGAATCAGTGTTAGCACAAAATGGTCTTCTTCCTCTACAGGTTTAAAATTTTTTATTGCTAACTCCATAAATATTTAAAAAATTATTATAAATAAAAAAAAAGATCGAGCCATTTATAAATATAGAAGTCTATCACATTATCACCTAAAGATAGAGAAGTTTATTATAGTTTATCGTTAACAACACTAAAATTTTTATATATTTATTAATATTTTGACTCATTTTACTATATTTAAAAACAACTTTAAGTATTTTTTTTTTTAATATAATTAATTAATTTTTATATTTTCATTTTATTTTGCATTATTAGTTCATATCATGGCCGGACGAGTCTTATGAAGAATATCGTCTAAGTGCTGGTTTTATCCAAGAATATATATTTCCAGAGGATGTCTACCCTCATTAACTAGAGTAACAACAGCCATATGGCTTCTGCATCTAGACTTAGGTATATAATTATTTAACCTATGATTATTATTATTATTAGGTTGAAATAACATTTTGATCCCTATACTTTGGAGTTTGTTCTATTTTAGTCACTATACTTTTAAATGTCCAAATTTAGTTCTTGTACTTTCAATAAATATTAAATTTAATCTCTACGACTAGTTTGTTGTGGATTTTTTCATTCATTTTTATTTTTTATTAGCATTTTCACTATAATTATTATAATTATTATGATTATTTAATTAATTTTGATAAAAATTAACTTCGAAAGACTAAATTTAAGATTTATTGAAGTATATGAGACTAAAATAGTATTTTAACGTTGTTATTATTGAAGAATAATTAGTCTATGATTTCTAACTATAAGTTTCATGGTTAATTCCCATCTATTTTACAGCGTGGAGCATACTATAAAACATTGAGGTGTTGGAGACAGAATTTCTTGAATAATAAAAGGTAAGAAAGCTTCTTCATATCATATTGTAAAAAAAAAAAAAAAAAAAAAAGAAACCAATTAAAAAATGTGTTTCAAATTATTGAAATATAATTTATATTTATTTTCAGCAAGATACTCGAACTTAGTTTTGATGAAAGTTTCTTCCGAACATGGGAATACTATTTTGATCATTGTGCTGCTGGTTTTAAATCACGTACTCTCGGAGACTATCAAGTATGTTATATATACGTTCATGTTCATGTATGTCCTTACTAAAATCTACAAAAATAGGCTAATTAAATCCTAAGAATTATAAATATTATTGTTAATTAAAAGAAATGTAACTTACTTTTTATTTTTATTTTTATTGTAGATTGTGTTTTCAAGGCCTGGTAATGTTGCAACTTTCAAAGATCCATCATGA

mRNA sequence

ATGATAGAAGCTGTTGGCCATGAATTCATGGAAGACTTTTTTGGTTCTTGTGAATCACGTGGAGCATACTATAAAACATTGAGGTGTTGGAGACAGAATTTCTTGAATAATAAAAGCAAGATACTCGAACTTAGTTTTGATGAAAGTTTCTTCCGAACATGGGAATACTATTTTGATCATTGTGCTGCTGGTTTTAAATCACGTACTCTCGGAGACTATCAAATTGTGTTTTCAAGGCCTGGTAATGTTGCAACTTTCAAAGATCCATCATGA

Coding sequence (CDS)

ATGATAGAAGCTGTTGGCCATGAATTCATGGAAGACTTTTTTGGTTCTTGTGAATCACGTGGAGCATACTATAAAACATTGAGGTGTTGGAGACAGAATTTCTTGAATAATAAAAGCAAGATACTCGAACTTAGTTTTGATGAAAGTTTCTTCCGAACATGGGAATACTATTTTGATCATTGTGCTGCTGGTTTTAAATCACGTACTCTCGGAGACTATCAAATTGTGTTTTCAAGGCCTGGTAATGTTGCAACTTTCAAAGATCCATCATGA

Protein sequence

MIEAVGHEFMEDFFGSCESRGAYYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSRPGNVATFKDPS
Homology
BLAST of Clc09G16366 vs. NCBI nr
Match: XP_038877038.1 (tuberculostearic acid methyltransferase UfaA1-like, partial [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-30
Identity = 75/152 (49.34%), Postives = 82/152 (53.95%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCESRGA-------------------------------------- 60
           MIEAVGHEFMEDFFGSCES  A                                      
Sbjct: 101 MIEAVGHEFMEDFFGSCESVLAENGLFVLQFISIPDQRYDEHRLSPDFMKEIFPGGCLPS 160

Query: 61  -------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYY 90
                                    YY+TLRCWR+NF+NNKSKILEL FDESF RTW YY
Sbjct: 161 LNRVTTAMVAASRLCVEHLENIGIHYYQTLRCWRKNFINNKSKILELGFDESFIRTWIYY 220

BLAST of Clc09G16366 vs. NCBI nr
Match: XP_038888566.1 (uncharacterized protein LOC120078371 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 5.1e-30
Identity = 78/153 (50.98%), Postives = 82/153 (53.59%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCESRGA-------------------------------------- 60
           MIEAVGHEFMEDFF SCES  A                                      
Sbjct: 709 MIEAVGHEFMEDFFSSCESVLAENGLLVLQFISTPDESYEEYRLKAGFIKEYIFQGGCLP 768

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLR WR+NFLNNKSKILEL FDE F RTWEY
Sbjct: 769 SLSRITTAMANASRLSVEHLENIGIHYYQTLRFWRKNFLNNKSKILELGFDERFLRTWEY 828

BLAST of Clc09G16366 vs. NCBI nr
Match: XP_038891587.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120080979 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 75/151 (49.67%), Postives = 82/151 (54.30%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCE------------------------------------------ 60
           MIEAVGHE+MEDFF SCE                                          
Sbjct: 717 MIEAVGHEYMEDFFCSCELVLAVNGLLILQFIAMPDESYEEYRVSPGFIKEYIFQGGCVP 776

Query: 61  --SRGA------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYF 90
             SR A                  YY+TLRCWR NFLN+KSKILEL F+ESF RTWEYYF
Sbjct: 777 SLSRXAMATASKLSVEHLENIGIHYYQTLRCWRTNFLNSKSKILELGFEESFIRTWEYYF 836

BLAST of Clc09G16366 vs. NCBI nr
Match: XP_022973880.1 (uncharacterized protein LOC111472470 isoform X2 [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 74/153 (48.37%), Postives = 82/153 (53.59%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 285 MIEAVGHEFMEDFFGSCESVLEDNGLLVLQFISMPDESYKEYRLSAGFIKEYIFQGGCIP 344

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR+NFLNN+SKIL+L FD+ F RTWEY
Sbjct: 345 SLSRITTAMASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEY 404

BLAST of Clc09G16366 vs. NCBI nr
Match: XP_022973879.1 (uncharacterized protein LOC111472470 isoform X1 [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 74/153 (48.37%), Postives = 82/153 (53.59%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 264 MIEAVGHEFMEDFFGSCESVLEDNGLLVLQFISMPDESYKEYRLSAGFIKEYIFQGGCIP 323

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR+NFLNN+SKIL+L FD+ F RTWEY
Sbjct: 324 SLSRITTAMASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEY 383

BLAST of Clc09G16366 vs. ExPASy Swiss-Prot
Match: O53732 (Tuberculostearic acid methyltransferase UfaA1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ufaA1 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-07
Identity = 26/62 (41.94%), Postives = 33/62 (53.23%), Query Frame = 0

Query: 20  RGAYYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSR 79
           R  Y +TLR WR+ F+  +  +  L FDE F R WE Y  +  AGF+S  L  YQ    R
Sbjct: 364 RPHYAETLRLWRERFMQRRDGLAHLGFDEVFARMWELYLAYSEAGFRSGYLDVYQWTLIR 423

Query: 80  PG 82
            G
Sbjct: 424 EG 425

BLAST of Clc09G16366 vs. ExPASy TrEMBL
Match: A0A6J1IFX4 (uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 74/153 (48.37%), Postives = 82/153 (53.59%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 264 MIEAVGHEFMEDFFGSCESVLEDNGLLVLQFISMPDESYKEYRLSAGFIKEYIFQGGCIP 323

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR+NFLNN+SKIL+L FD+ F RTWEY
Sbjct: 324 SLSRITTAMASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEY 383

BLAST of Clc09G16366 vs. ExPASy TrEMBL
Match: A0A6J1ICH0 (uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 74/153 (48.37%), Postives = 82/153 (53.59%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 285 MIEAVGHEFMEDFFGSCESVLEDNGLLVLQFISMPDESYKEYRLSAGFIKEYIFQGGCIP 344

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR+NFLNN+SKIL+L FD+ F RTWEY
Sbjct: 345 SLSRITTAMASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEY 404

BLAST of Clc09G16366 vs. ExPASy TrEMBL
Match: A0A6J1EXS1 (uncharacterized protein LOC111439562 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439562 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 74/153 (48.37%), Postives = 80/153 (52.29%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 285 MIEAVGHEFMEDFFGSCESVLQDNGLLVLQFISVPDESYEEYRLSAGFIKEYIFQGGCLP 344

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR NFLNN+S ILEL FD+ F RTWEY
Sbjct: 345 SLSRITTAMTSASRLCVEHLENIGIHYYQTLRCWRNNFLNNQSNILELGFDQGFIRTWEY 404

BLAST of Clc09G16366 vs. ExPASy TrEMBL
Match: A0A6J1EY68 (uncharacterized protein LOC111439562 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439562 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 74/153 (48.37%), Postives = 80/153 (52.29%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 264 MIEAVGHEFMEDFFGSCESVLQDNGLLVLQFISVPDESYEEYRLSAGFIKEYIFQGGCLP 323

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR NFLNN+S ILEL FD+ F RTWEY
Sbjct: 324 SLSRITTAMTSASRLCVEHLENIGIHYYQTLRCWRNNFLNNQSNILELGFDQGFIRTWEY 383

BLAST of Clc09G16366 vs. ExPASy TrEMBL
Match: A0A6J1IB60 (uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28
Identity = 73/153 (47.71%), Postives = 82/153 (53.59%), Query Frame = 0

Query: 1   MIEAVGHEFMEDFFGSCES-----------------------------------RGA--- 60
           MIEAVGHEFMEDFFGSCES                                   +G    
Sbjct: 285 MIEAVGHEFMEDFFGSCESVLEDNGLLVLQFISMPDESYKEYRLSAGFIKEYIFQGGCIP 344

Query: 61  --------------------------YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEY 90
                                     YY+TLRCWR+NFLNN+SKIL+L F++ F RTWEY
Sbjct: 345 SLSRITTAMASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFNQGFIRTWEY 404

BLAST of Clc09G16366 vs. TAIR 10
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-25
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 23  YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSRPGN 82
           YY+TLR WR+NFL  + +I+ L FD+ F RTWEYYFD+CAAGFK+RTLGDYQ+VFSRPGN
Sbjct: 790 YYQTLRLWRKNFLERQKQIMALGFDDKFVRTWEYYFDYCAAGFKTRTLGDYQLVFSRPGN 849

Query: 83  VATFKD 89
           VA F D
Sbjct: 850 VAAFAD 855

BLAST of Clc09G16366 vs. TAIR 10
Match: AT3G23470.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-24
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 23  YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSRPGN 82
           YY TLRCWR+NFL  + +I++L FD+ F RTWEYYFD+CAAGFK+ TL  YQIVFSRPGN
Sbjct: 382 YYHTLRCWRKNFLERQKQIIDLGFDDKFIRTWEYYFDYCAAGFKTLTLRSYQIVFSRPGN 441

Query: 83  VATFKD 89
           VA F D
Sbjct: 442 VAAFGD 447

BLAST of Clc09G16366 vs. TAIR 10
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 107.1 bits (266), Expect = 7.6e-24
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 23  YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSRPGN 82
           YY+TLR WR+NFL  + +I+ L FD+ F RTWEYYFD+CAAGFK+ TLG+YQ+VFSRPGN
Sbjct: 790 YYQTLRLWRKNFLARQKQIMALGFDDKFVRTWEYYFDYCAAGFKTLTLGNYQLVFSRPGN 849

Query: 83  VATFKD 89
           VA F D
Sbjct: 850 VAAFAD 855

BLAST of Clc09G16366 vs. TAIR 10
Match: AT3G23480.2 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 23  YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSRPGN 82
           YY TLR WR+N L  + +I++L FDE F RTWEYYFD+CAAGFK+ TL +YQIVFSRPGN
Sbjct: 359 YYPTLRYWRKNLLERQKQIIDLGFDEKFLRTWEYYFDYCAAGFKTLTLRNYQIVFSRPGN 418

Query: 83  VATF 87
           VA F
Sbjct: 419 VAAF 422

BLAST of Clc09G16366 vs. TAIR 10
Match: AT3G23460.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-22
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 23  YYKTLRCWRQNFLNNKSKILELSFDESFFRTWEYYFDHCAAGFKSRTLGDYQIVFSRPGN 82
           YY+TLR WR+NF   + +I +L FD+ F RT EYYFD+CAAGFK+RT+GDYQIVFSRPGN
Sbjct: 219 YYQTLRLWRKNFFERQKQITDLGFDDRFVRTCEYYFDYCAAGFKTRTVGDYQIVFSRPGN 278

Query: 83  VATFKDPS 91
           V    D S
Sbjct: 279 VIALGDDS 286

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877038.13.9e-3049.34tuberculostearic acid methyltransferase UfaA1-like, partial [Benincasa hispida][more]
XP_038888566.15.1e-3050.98uncharacterized protein LOC120078371 [Benincasa hispida][more]
XP_038891587.11.6e-2849.67LOW QUALITY PROTEIN: uncharacterized protein LOC120080979 [Benincasa hispida][more]
XP_022973880.12.8e-2848.37uncharacterized protein LOC111472470 isoform X2 [Cucurbita maxima][more]
XP_022973879.12.8e-2848.37uncharacterized protein LOC111472470 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
O537326.3e-0741.94Tuberculostearic acid methyltransferase UfaA1 OS=Mycobacterium tuberculosis (str... [more]
Match NameE-valueIdentityDescription
A0A6J1IFX41.4e-2848.37uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1ICH01.4e-2848.37uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EXS13.0e-2848.37uncharacterized protein LOC111439562 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EY683.0e-2848.37uncharacterized protein LOC111439562 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IB605.2e-2847.71uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT3G23510.11.8e-2571.21Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23470.11.5e-2469.70Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23530.17.6e-2468.18Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23480.21.9e-2268.75Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23460.13.2e-2264.71S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 16..84
e-value: 2.2E-16
score: 62.0
NoneNo IPR availablePFAMPF02353CMAScoord: 20..71
e-value: 9.9E-10
score: 38.2
NoneNo IPR availablePANTHERPTHR43675:SF22SUBFAMILY NOT NAMEDcoord: 1..20
NoneNo IPR availablePANTHERPTHR43675:SF22SUBFAMILY NOT NAMEDcoord: 22..89
IPR026669Arsenite methyltransferase-likePANTHERPTHR43675ARSENITE METHYLTRANSFERASEcoord: 1..20
coord: 22..89
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 20..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G16366.1Clc09G16366.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity