Clc09G14770 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G14770
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	PMD domain-containing protein
Location	ClcChr09: 19776428 .. 19776754 (+)
RNA-Seq Expression	Clc09G14770
Synteny	Clc09G14770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCTTGGGGGTCTTTCGATCAAGAGAGTTTGTATGAGGAGGTCATTCCTTGCTATAGAAAATTAACCGGCTCGCGAGAGAAGACAAAATATCTCCCGAAGACTTGTGAACATCTGTTTTCAGCGTATCATTCAATAGTTTGCTCCCAGAGGAAAGACTGTGCATCATCCTTTAAAAATGACTCCCAAGTAACTATTAGCTCCTGGATCTCATTCTGGTTCCTTGGGGCTCGAAAATATGATAAGCCTTCTGCAAGAAAGCAAAAGAAAGCTTCCCGTTCTCGGTCCACTCATAACCCAGATGGTGCAAAGATCAAGTATTGA

mRNA sequence

ATGGTCGCTTGGGGGTCTTTCGATCAAGAGAGTTTGTATGAGGAGGTCATTCCTTGCTATAGAAAATTAACCGGCTCGCGAGAGAAGACAAAATATCTCCCGAAGACTTGTGAACATCTGTTTTCAGCGTATCATTCAATAGTTTGCTCCCAGAGGAAAGACTGTGCATCATCCTTTAAAAATGACTCCCAAGTAACTATTAGCTCCTGGATCTCATTCTGGTTCCTTGGGGCTCGAAAATATGATAAGCCTTCTGCAAGAAAGCAAAAGAAAGCTTCCCGTTCTCGGTCCACTCATAACCCAGATGGTGCAAAGATCAAGTATTGA

Coding sequence (CDS)

ATGGTCGCTTGGGGGTCTTTCGATCAAGAGAGTTTGTATGAGGAGGTCATTCCTTGCTATAGAAAATTAACCGGCTCGCGAGAGAAGACAAAATATCTCCCGAAGACTTGTGAACATCTGTTTTCAGCGTATCATTCAATAGTTTGCTCCCAGAGGAAAGACTGTGCATCATCCTTTAAAAATGACTCCCAAGTAACTATTAGCTCCTGGATCTCATTCTGGTTCCTTGGGGCTCGAAAATATGATAAGCCTTCTGCAAGAAAGCAAAAGAAAGCTTCCCGTTCTCGGTCCACTCATAACCCAGATGGTGCAAAGATCAAGTATTGA

Protein sequence

MVAWGSFDQESLYEEVIPCYRKLTGSREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIKY

Homology

[Close]

BLAST of Clc09G14770 vs. NCBI nr
Match: TYK06278.1 (hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 6.8e-29
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 8   DQESLYEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVT 67
           D    YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVT
Sbjct: 145 DVGDFYEEKIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRYDRSTSSKNDSQVT 204

Query: 68  ISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           I SWISFW+LG+R YDKP+ RKQKKASRS+ST NPDG KI+
Sbjct: 205 IGSWISFWYLGSRSYDKPTTRKQKKASRSKSTQNPDGLKIQ 245

[Close]

BLAST of Clc09G14770 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 25  YEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 84

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG++ YDKP  RKQKKASRS+ST NPDG+KI+
Sbjct: 85  SFWYLGSKSYDKPKTRKQKKASRSKSTQNPDGSKIQ 120

[Close]

BLAST of Clc09G14770 vs. NCBI nr
Match: KAA0043323.1 (hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 157 YEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 216

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Sbjct: 217 SFWYLGSRSYDKPTTRKQKKTSRSKSTQNPDGSKIQ 252

[Close]

BLAST of Clc09G14770 vs. NCBI nr
Match: TYK19639.1 (hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-28
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE+IP +++LT  SR+KTK LP  C++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 195 YEEMIPSFKELTSTSRDKTKCLPTACQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 254

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Sbjct: 255 SFWYLGSRSYDKPTTRKQKKVSRSKSTQNPDGSKIQ 290

[Close]

BLAST of Clc09G14770 vs. NCBI nr
Match: KAA0025356.1 (hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-28
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 167 YEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 226

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG+R YDKP+ RKQKKAS S+ST NPDG+KI+
Sbjct: 227 SFWYLGSRSYDKPTTRKQKKASHSKSTQNPDGSKIQ 262

[Close]

BLAST of Clc09G14770 vs. ExPASy TrEMBL
Match: A0A5D3C543 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00620 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.3e-29
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 8   DQESLYEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVT 67
           D    YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVT
Sbjct: 145 DVGDFYEEKIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRYDRSTSSKNDSQVT 204

Query: 68  ISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           I SWISFW+LG+R YDKP+ RKQKKASRS+ST NPDG KI+
Sbjct: 205 IGSWISFWYLGSRSYDKPTTRKQKKASRSKSTQNPDGLKIQ 245

[Close]

BLAST of Clc09G14770 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.6e-29
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 25  YEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 84

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG++ YDKP  RKQKKASRS+ST NPDG+KI+
Sbjct: 85  SFWYLGSKSYDKPKTRKQKKASRSKSTQNPDGSKIQ 120

[Close]

BLAST of Clc09G14770 vs. ExPASy TrEMBL
Match: A0A5A7TIV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002340 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.6e-29
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 157 YEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 216

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Sbjct: 217 SFWYLGSRSYDKPTTRKQKKTSRSKSTQNPDGSKIQ 252

[Close]

BLAST of Clc09G14770 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 167 YEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 226

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG+R YDKP+ RKQKKAS S+ST NPDG+KI+
Sbjct: 227 SFWYLGSRSYDKPTTRKQKKASHSKSTQNPDGSKIQ 262

[Close]

BLAST of Clc09G14770 vs. ExPASy TrEMBL
Match: A0A5A7TFC8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00910 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 13  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWI 72
           YEE+IP +++LT  SR+KTK LP  C++LF AY+SIVC+QR D ++S KNDSQVTI SWI
Sbjct: 211 YEEMIPSFKELTSTSRDKTKCLPTACQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWI 270

Query: 73  SFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK 108
           SFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Sbjct: 271 SFWYLGSRSYDKPTTRKQKKVSRSKSTQNPDGSKIQ 306

The following BLAST results are available for this feature:

BLAST of Clc09G14770 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06278.1	6.8e-29	66.34	hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	2.0e-28	67.71	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]
KAA0043323.1	2.0e-28	67.71	hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]	[more]
TYK19639.1	2.6e-28	66.67	hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]	[more]
KAA0025356.1	2.6e-28	67.71	hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]	[more]

BLAST of Clc09G14770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G14770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C543	3.3e-29	66.34	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UVI5	9.6e-29	67.71	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TIV2	9.6e-29	67.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SHN8	1.3e-28	67.71	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TFC8	1.3e-28	66.67	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Clc09G14770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..108
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 10..105
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 10..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G14770.1	Clc09G14770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane