Clc09G14020 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G14020
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotrans_gag domain-containing protein
LocationClcChr09: 16734326 .. 16736504 (-)
RNA-Seq ExpressionClc09G14020
SyntenyClc09G14020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACAACTTCGAACTCAAACCAGGGTTGTCCCAAATGGCACGAGAACTTGCTTATAGAGGACATCCCACTAAGGACCGTCACAAACACCTTCGATTTTTTCTTGGAGATATGTGGGATGGTGAAGATGAATGGGGTTTCTAACGATGCCATTAAGTTAAAACCTTTTCCTTTCTTTTTACCGGACAGTGCAAAGGATTGGCTAAAGAGCATTACCACATGGAATACACTAGCTCAAGTTTTCTTGAACAAATACTTCCCACTGGAAAAGTCACAAAAATTGAGAACAAAGATTGACACATTCTGTTAAATTGAAGATGAGCAATTCTATGAGGCTTGAGAACGGTTCAAGGACCTTTTGAGGAGATGCTGTAACACCCCCACCAAAGATATTAAATAAACTTCTATATCAATATCTAGGAGTGAGTGTTACCTAATCTGTATTCTATTAAAGCCTGTTATAAATGCATTAGTAAAACTAGAAATTCACAACTAGACAGTGAAACGCTCGGCCTTACAACATTATAACAAAATTACTTAATAAGATCACATCATAAGTAAGTTTTAAAAACTATGTTTAGAGTTTACAAACATATCTGGTGAATTTACATATGCTACCCAAGCTAAGTGTGACTTCTATTAAAAGATAGGGTTTACAGATTTCCAAATTACAAAATTCTATTCTGGCACAGACGGATCTTGATGGTAGGCTAGGCACCCTGAACACGCCTGCTACCTGGAAAAGAAACATCAAAGAAACGAAATCTATGAGCTACATTGCTCAGTGAGTGACTACTGAAATATAAAATCAATAACATGATAACTACAATCTTGATATGAACTGGCTAATCATGCCTTGTATCACAATTTATAACCTTATAGATGACTGTAACCTGTAAAACATTATCAGTACATAAATGATTTTCATTTCATTAAACTTTTGTTGAGGCAGAGCGAACTCAACGCACCCAACGTCAATAAGCCTTAGCTGTGTGGAGAAATCTCAATACATCAGCGTCAAACCTTTCTATTCTGCTCATGAATCTATCTGATCTCGGGCTGCCCGTGTACCTTCCCATGTCCTTCGGTACCAGGGTCCCATGGAATTAATCACTCACCGTCTTTAAATCCTTAGGTGAGAGCTTCACATAAGTTAAGTACTAGGGCTGCCCATATGCCTTCTCATGTCCCTCAGCATTGGGTCCCAGAGAATTACTCACTCACCGTCATTAAATCCTTAGGTGAGTGTTTCACATAAGTTACATACTAGGGCTGCCCATATGCCTTCAACTAACCTTCAGCATTGGGTCCCCGAGAATCTTTCTAGAACACTAACTTGCACATCACATTCATCATAATATAACAACAAACATGATACCTCAACATTCATAAATACTAAGGCTACCCATATGCCTTCACCTATCCTTCGGCACTGGGTCTCATTCAAATACTTCTAGTGCACAAACATGCACCATACATTTATCATCATTTAACTAAATTCGTAATATCCAGAATTCTCGGAACATTTATCTAGCAACTAGCTTGATAAAACTTAGGATATTAACTGATACATTGTCAAGCTTATCTCACATATAAAATACGTGCTAGTTTCATACACATACGTACACTTCAATTCATGCTTCAAAGATAGTATTAAGCACAAAGAAATGAAATAATATTCAAGTTAAGCACATCTCAAACCATAAAGTCACTCACGACTGATTCCGGACTCCGAACGGGTTGTATGCTTTCCCTAGCTCCTCCTGCCCTGTAAACATACCATTTTCGTGTTAAGTATTTATAATATTCCTTTTCATATTCTTTACGTTTGCTTACATGTTTTAAACATGGGTTTTCATCACTACTTTTCTTTTCTTATCATTATCAGTATGAGCGAGACTAAGAGGTTAACAATTCATAACTATGCGGCACCAGCGATACTCAACTTCGCAGGACTAGCGATATTACCTTCGAAGAGCGATACTAAGCGAGAGTCAGCGAGAGTTGTGAGACGCAATGGTCTCTGCGTTACCAGCGATACTTGTCTCGCTGATCACTCTCCAGTTCTTAGCGATATTCCTATCTCAGCGATACTCCTATCTCAGCGACTCCCGATGATTATTGTTCTTCTTCTTCCTTTTCTAATCTGTTCTCAAACTGCTCAACATCAAATCTAG

mRNA sequence

ATGTCAACAACTTCGAACTCAAACCAGGGTTGTCCCAAATGGCACGAGAACTTGCTTATAGAGGACATCCCACTAAGGACCGTCACAAACACCTTCGATTTTTTCTTGGAGATATGTGGGATGGTGAAGATGAATGGGGTTTCTAACGATGCCATTAAGTTAAAACCTTTTCCTTTCTTTTTACCGGACAGTGCAAAGGATTGGCTAAAGAGCATTACCACATGGAATACACTAGCTCAAACGGATCTTGATGGTAGGCTAGGCACCCTGAACACGCCTGCTACCTGGAAAAGAAACATCAAAGAAACGAAATCTATGAGCTACATTGCTCATATGAGCGAGACTAAGAGGTTAACAATTCATAACTATGCGGCACCAGCGATACTCAACTTCGCAGGACTAGCGATATTACCTTCGAAGAGCGATACTAAGCGAGAGTCAGCGAGAGTTGTGAGACGCAATGGTCTCTGCGTTACCAGCGATACTTGTCTCGCTGATCACTCTCCAGTTCTTAGCGATATTCCTATCTCAGCGATACTCCTATCTCAGCGACTCCCGATGATTATTGTTCTTCTTCTTCCTTTTCTAATCTGTTCTCAAACTGCTCAACATCAAATCTAG

Coding sequence (CDS)

ATGTCAACAACTTCGAACTCAAACCAGGGTTGTCCCAAATGGCACGAGAACTTGCTTATAGAGGACATCCCACTAAGGACCGTCACAAACACCTTCGATTTTTTCTTGGAGATATGTGGGATGGTGAAGATGAATGGGGTTTCTAACGATGCCATTAAGTTAAAACCTTTTCCTTTCTTTTTACCGGACAGTGCAAAGGATTGGCTAAAGAGCATTACCACATGGAATACACTAGCTCAAACGGATCTTGATGGTAGGCTAGGCACCCTGAACACGCCTGCTACCTGGAAAAGAAACATCAAAGAAACGAAATCTATGAGCTACATTGCTCATATGAGCGAGACTAAGAGGTTAACAATTCATAACTATGCGGCACCAGCGATACTCAACTTCGCAGGACTAGCGATATTACCTTCGAAGAGCGATACTAAGCGAGAGTCAGCGAGAGTTGTGAGACGCAATGGTCTCTGCGTTACCAGCGATACTTGTCTCGCTGATCACTCTCCAGTTCTTAGCGATATTCCTATCTCAGCGATACTCCTATCTCAGCGACTCCCGATGATTATTGTTCTTCTTCTTCCTTTTCTAATCTGTTCTCAAACTGCTCAACATCAAATCTAG

Protein sequence

MSTTSNSNQGCPKWHENLLIEDIPLRTVTNTFDFFLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLKSITTWNTLAQTDLDGRLGTLNTPATWKRNIKETKSMSYIAHMSETKRLTIHNYAAPAILNFAGLAILPSKSDTKRESARVVRRNGLCVTSDTCLADHSPVLSDIPISAILLSQRLPMIIVLLLPFLICSQTAQHQI
Homology
[Close]
BLAST of Clc09G14020 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 35  FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK-----SITTWNTLAQTDLD 85
           FLEICG VKMNGVSNDAIKL+ FPF L D AKDWL+     SITTW  LAQ  L+
Sbjct: 112 FLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLN 166

[Close]
BLAST of Clc09G14020 vs. NCBI nr
Match: XP_038880454.1 (uncharacterized protein LOC120072115 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-09
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 34 FFLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWL-----KSITTWNTLAQTDLD 85
          +FLEICG VK+NGV+NDAI+L+ FPF L D AKDWL     +SITTW  LAQ  L+
Sbjct: 21 YFLEICGTVKINGVTNDAIRLRLFPFSLKDRAKDWLETIPSESITTWEELAQAFLN 76

[Close]
BLAST of Clc09G14020 vs. NCBI nr
Match: XP_030443779.1 (uncharacterized protein LOC115666134 [Syzygium oleosum])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-07
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 16  ENLLIEDIPLRTVTNTFDFFLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK----- 75
           +++    +P   +    D FLEIC  +K NGVS+DAI+L+ FPF L D AK WL      
Sbjct: 51  QSVQFSGLPSDDLNAHIDAFLEICDTIKYNGVSDDAIRLRLFPFSLRDKAKGWLSSLPAG 110

Query: 76  SITTWNTLAQ 81
           SITTWN +AQ
Sbjct: 111 SITTWNDMAQ 120

[Close]
BLAST of Clc09G14020 vs. NCBI nr
Match: XP_038973879.1 (uncharacterized protein LOC120105457 [Phoenix dactylifera])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 35  FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWL-----KSITTWNTLAQTDL 84
           FLEIC  +KMNGVS+DAI+L+ FPF L D AK WL      S TTWN L+Q  L
Sbjct: 68  FLEICDTIKMNGVSDDAIRLRLFPFSLKDKAKAWLNSKAPNSFTTWNALSQAFL 121

[Close]
BLAST of Clc09G14020 vs. NCBI nr
Match: XP_038983664.1 (uncharacterized protein LOC120111176 [Phoenix dactylifera])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 35  FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWL-----KSITTWNTLAQTDL 84
           FLEIC  +KMNGVS+DAI+L+ FPF L D AK WL      S TTWN L+Q  L
Sbjct: 51  FLEICDTIKMNGVSDDAIRLRLFPFSLKDKAKAWLNSKAPNSFTTWNALSQAFL 104

[Close]
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match: A0A5N6N4K2 (Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_25292 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 35 FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK-----SITTWNTLAQ 81
          F+EIC   K NGVS+DAIKL+ FPF L D AK WL      S+TTW  LAQ
Sbjct: 15 FIEICDTFKANGVSDDAIKLRMFPFSLKDRAKAWLSSLPPGSVTTWEDLAQ 65

[Close]
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match: A0A5N6LUB5 (Retrotrans_gag domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_38555 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 35  FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK-----SITTWNTLAQ 81
           F+EIC   K NGVS+DAIKL+ FPF L D AK WL      S+TTW  LAQ
Sbjct: 117 FIEICDTFKANGVSDDAIKLRMFPFSLKDRAKAWLSSLPPGSVTTWEDLAQ 167

[Close]
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match: A0A5N6N9T2 (Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_22237 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 35  FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK-----SITTWNTLAQ 81
           F+EIC   K NGVS+DAIKL+ FPF L D AK WL      S+TTW  LAQ
Sbjct: 774 FIEICDTFKANGVSDDAIKLRMFPFSLKDRAKAWLSSLPPGSVTTWEDLAQ 824

[Close]
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match: A0A5N6MBJ1 (Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_33297 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 35 FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK-----SITTWNTLAQ 81
          F+EIC   K NGVS+DAIKL+ FPF L D AK WL      S+TTW  LAQ
Sbjct: 20 FIEICDTFKANGVSDDAIKLRMFPFSLKDRAKAWLSSLPPGSVTTWEDLAQ 70

[Close]
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match: A0A5N6P787 (Retrotrans_gag domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_12902 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 35  FLEICGMVKMNGVSNDAIKLKPFPFFLPDSAKDWLK-----SITTWNTLAQ 81
           F+EIC   K NGVS+DAIKL+ FPF L D AK WL      S+TTW  LAQ
Sbjct: 116 FIEICDTFKANGVSDDAIKLRMFPFSLKDRAKAWLSSLPPGSVTTWEDLAQ 166

The following BLAST results are available for this feature:
BLAST of Clc09G14020 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_217833153.11.3e-0969.09retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038880454.18.7e-0962.50uncharacterized protein LOC120072115 [Benincasa hispida][more]
XP_030443779.12.2e-0747.14uncharacterized protein LOC115666134 [Syzygium oleosum][more]
XP_038973879.11.1e-0659.26uncharacterized protein LOC120105457 [Phoenix dactylifera][more]
XP_038983664.11.1e-0659.26uncharacterized protein LOC120111176 [Phoenix dactylifera][more]
BLAST of Clc09G14020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6N4K27.5e-0658.82Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_25292 PE=4 SV=1[more]
A0A5N6LUB57.5e-0658.82Retrotrans_gag domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88... [more]
A0A5N6N9T27.5e-0658.82Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_22237 PE=3 SV=1[more]
A0A5N6MBJ17.5e-0658.82Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_33297 PE=4 SV=1[more]
A0A5N6P7877.5e-0658.82Retrotrans_gag domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88... [more]
BLAST of Clc09G14020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G14020.1Clc09G14020.1mRNA