Clc09G13280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G13280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	vacuolar protein sorting-associated protein 55 homolog
Location	ClcChr09: 13512043 .. 13515059 (+)
RNA-Seq Expression	Clc09G13280
Synteny	Clc09G13280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAAAGTGAAACATTTCCTAATCGAAATTACAGGCTGAGCTAAGGGATAGTTTGAAGCAAACAGATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCCGCCGCTGAGCTCCTTCAATCCCGTTTTCTCAGGTTCTTACTTCTTCTCCTCCAATTCCACAAATTCGATACGGATTTGGTTCGTTTATGATTCTGATTTTTTTGTTCCAATCCAACTCATTAAGTTCGTCGCTGTCTGGTCTTTCTTACTTTTAGCCAAAATTTTAGGTATTCTCTGTTTTCCGCGTTTGTTCATGTTTGTATCGGTTACGGATGTTCTTCCGAATCCGGATATCGATGACTTGAAGCTAAATTCATGTTAAAATACACTGAAATTGAGAAAAACATTACGGAATTTTGTTCGGAATTAGATTTCTGTTCAAGTTCATTTGTGAATTTGATTTCGATCTTACCAATTGGAAACAACTTTTCGTTCGGATTTTTTGAAGTCTTGCTTCTTTCCAGGCTTCATTTCACTTTCTAAGGCGGCTTGAGATGAGGGAAAGCCTTAATGGACTAAAAAACATATATTTCATAGTTAAAAATCAGTTTAATGTTTTATCTGTACTTTTAAATGTGATCTCAAGTGACAAACAAACTTCTACTTTTCCTTAAAAAAAAAAAAAAAAGAAAAGAATTAATAGTATATAGATGAGGTTAATTATCTATGTTGTTATAATGATTTTAAAATTAAAGTTATGAGAACTTATATCCAAAGTAGTGGATATTATATTATTGGAGAGATATGTGAAGGTACGTTTCTTTTTTCATCAATTTCTTATGATTAATTTTGAAGGATCAAAACATTATTTTGTTTGATTAATTTTTATTTTTATATTTTACCTTTTTGTTCCGCTTTGCATAAGATAACTTCTAAAATTAAAAAAAAAAAATATGGTTTAAATGGAACAATTACAACTACCGATAATATTAACTAAAAAAAAAAAATCTTCCAATTATTTTTATGGGTTATATTATAAATTTAGTCCGTATTATTTAAATAAAGTTAAAATTTAGTTTTTTTGATTTTAAATGTCAGAATTTAGACTATATAATTTGATAAAACTTTACAAATAATCCCTATAAAAATTGTTTATGAAAATTTTATCATATTATAAAGATTAAATTCTAGTATAAACCATAAACACTAAATTCCGACTCTCAAAGGTACCAAATTTAAAATTTAACCATTTTTACATACATTGAAATAAGACATACTATATTCAGATTATATTCCCATTTGTTTAGATCCTCAATCTTGGGAATTGGTACATTTCAGTTGTTTTCCTTAATGAAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGCTGCTTGCACATGAGCAAAGTTGTAACATTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGTCACTACACTATTTCCTTCACCAACACTAAAAGCTTCTTATTCTCACTCTTTTTTGTTTTGTTAGTCTCTCACAGGGGACTAATTCTGAAGTGTTTTCATTTATATGTAATGACAGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGGTAAGTTTGGAAAATGATATTGTTTTAACCCGTTGATTGAACCGAGTTTAGTTTCTGAACTTTAAGGTTGTGTCTACCTAATTTCATGAACTTTCAAAAATTTTCTTTCATTTTCAAAACTGGGTTTGGTATTTTTAAAACACTTATAAAGTAAATTACACAACAAAAAAACTCAAGGTACAAGTAATGTTTCTAAACTTACTTTTCAAAAACTAATAACTAAAAACCAAATGATTATCAAACGGAGCTTAAACTTTCAATTTTTATGCGTGATAAATCACCGACAAATTTGAAACTTTTAAAAATTATTCAATATATTAGATATGAATTTGAATCTTATATCGAATACAATCCAAAACTTGTAATTAGGTTTCTAGTAGATTAAGTAATTTTAGAAAATAACAAAATTTAGAGATTACATTCGTAATTTTGAAAGTTAAGAGACCAAATAAATCCGAAGCTAAAAACTAATGAGTAAATTTGTGTTTCATCCCTATTCCACAATTTGATACTTAAATAAGTGATGTTTATTCCGTTCCATTCATCCCATACCATTTGTTTCGACAAACAGTGAATTGATCATTTTTTGATATTGGAAGTAGACAATAGAAGGTGGTTCTTGTAAGGACAGCTGCTTCCTTTCAGTACTTCCTCAAGTCAATAGATAACAATCTATGCCTCTTGCAAGCAATCAAATTTGTTATTATTAATTAAATTTTTTTAAAAAAAGAAAAAAAGCTTGTTTGAACATAATTGATGACAATTCCATTTTACTGTTCTCGCAGTGGTTATGTATGTTCTTATCCCAATGTCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCACTATTTTCCGAATCGAGTGACAGGTTTGTTTTCCATCATTGTCGAGACAATTAAACTTGATGCCTAGGTTTGATAATAACAAGTTTTCTTTTAATGATTAAGAAAACAGTTGGGTGAATGCGACGAAATTTTTAACGGGCGCTTCGGCAGTTGGAAGCATTGCCATACCTGCAATTTTGAAGCATGCTGACATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGCTTTTGTAGTGGCCATTTTATGTTACCTATGGATGAGTAATGAAGAAGACTACAATGTACTCTAAGGTGTGTGTTTCATGAAGTACTCGTGTGGAAGAAATCATTTTCCTGGAGGTCCATTCTCGTAAGCGAACTGGAGCAAGCTATCATTAGATAAACAAATCTTTCTAAAGCAATTCGACTCAGCCCTATCATACACCCATTTAAAAGTTTTTCTTGAGTTTCTCTATATCAACCAACAATCCAATAGTAATGATTTGAAGCACCATTTTTTTACACTATTACAGAAACCAATTGCATGGATATGTAAAATATAGGAATGTTGAAAGGGA

mRNA sequence

GTTGAAAGTGAAACATTTCCTAATCGAAATTACAGGCTGAGCTAAGGGATAGTTTGAAGCAAACAGATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCCGCCGCTGAGCTCCTTCAATCCCGTTTTCTCAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGCTGCTTGCACATGAGCAAAGTTGTAACATTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTATGTATGTTCTTATCCCAATGTCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCACTATTTTCCGAATCGAGTGACAGTTGGGTGAATGCGACGAAATTTTTAACGGGCGCTTCGGCAGTTGGAAGCATTGCCATACCTGCAATTTTGAAGCATGCTGACATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGCTTTTGTAGTGGCCATTTTATGTTACCTATGGATGAGTAATGAAGAAGACTACAATGTACTCTAAGGTGTGTGTTTCATGAAGTACTCGTGTGGAAGAAATCATTTTCCTGGAGGTCCATTCTCGTAAGCGAACTGGAGCAAGCTATCATTAGATAAACAAATCTTTCTAAAGCAATTCGACTCAGCCCTATCATACACCCATTTAAAAGTTTTTCTTGAGTTTCTCTATATCAACCAACAATCCAATAGTAATGATTTGAAGCACCATTTTTTTACACTATTACAGAAACCAATTGCATGGATATGTAAAATATAGGAATGTTGAAAGGGA

Coding sequence (CDS)

ATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCCGCCGCTGAGCTCCTTCAATCCCGTTTTCTCAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGCTGCTTGCACATGAGCAAAGTTGTAACATTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTATGTATGTTCTTATCCCAATGTCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCACTATTTTCCGAATCGAGTGACAGTTGGGTGAATGCGACGAAATTTTTAACGGGCGCTTCGGCAGTTGGAAGCATTGCCATACCTGCAATTTTGAAGCATGCTGACATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGCTTTTGTAGTGGCCATTTTATGTTACCTATGGATGAGTAATGAAGAAGACTACAATGTACTCTAA

Protein sequence

MKVEATRSNSSQSAAELLQSRFLSEKDYLMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNVL

Homology

[Close]

BLAST of Clc09G13280 vs. NCBI nr
Match: XP_022157395.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022157399.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 224.9 bits (572), Expect = 4.9e-55
Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 30  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSD 89
           M DLG C HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+L+PM LLFFAGSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 90  SSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAIL 149
           +SSL SES DSWVNATKFLTGAS VGSIAIP ILKHA++IGWGA+ALD SSLL FVVAIL
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 150 CYLWMSNEEDYNVL 164
           CYLWMSNE+DYN L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Clc09G13280 vs. NCBI nr
Match: KAE8055554.1 (hypothetical protein FH972_012387 [Carpinus fangiana])

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 96/129 (74.42%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 35  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLF 94
           SCLH  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVL+PM LLFFAGSDSSSLF
Sbjct: 11  SCLHTGKLALLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPMPLLFFAGSDSSSLF 70

Query: 95  SESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWM 154
           SES ++WVNATKFLTGAS +GS+AIPAILKHA +IGWGA+A++FSS   FV+AI+CY+ M
Sbjct: 71  SESDNNWVNATKFLTGASTIGSLAIPAILKHAGVIGWGALAMEFSSFFIFVLAIMCYIRM 130

Query: 155 SNEEDYNVL 164
           ++E+DYNVL
Sbjct: 131 NSEDDYNVL 139

[Close]

BLAST of Clc09G13280 vs. NCBI nr
Match: XP_004150170.1 (vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739448.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739449.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >KGN55797.1 hypothetical protein Csa_009853 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 5.4e-46
Identity = 95/134 (70.90%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 29  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGS 88
           L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGS
Sbjct: 4   LPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGS 63

Query: 89  DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAI 148
           DSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +IGWGA+A+D SS + FVVAI
Sbjct: 64  DSSSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAI 123

Query: 149 LCYLWMSNEEDYNV 163
           LC++ MS ++DY++
Sbjct: 124 LCFMGMSEDDDYSM 137

[Close]

BLAST of Clc09G13280 vs. NCBI nr
Match: XP_021599879.1 (vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY24482.1 hypothetical protein MANES_17G019200v8 [Manihot esculenta] >OAY24520.2 hypothetical protein MANES_17G019200v8 [Manihot esculenta])

HSP 1 Score: 194.5 bits (493), Expect = 7.1e-46
Identity = 94/129 (72.87%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 35  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLF 94
           +CL   K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSLF
Sbjct: 10  ACLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLF 69

Query: 95  SESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWM 154
           SES++SWVNATKFLTGASAVGSIAIPAILKHA +IGWGA+A++ SS   FV+AI+CY+ M
Sbjct: 70  SESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFVIAIMCYISM 129

Query: 155 SNEEDYNVL 164
           ++E+ Y++L
Sbjct: 130 NDEDGYSIL 138

[Close]

BLAST of Clc09G13280 vs. NCBI nr
Match: XP_008448742.1 (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >XP_008448744.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >XP_016900672.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >XP_016900673.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >KAA0053070.1 vacuolar protein sorting-associated protein 55-like protein [Cucumis melo var. makuwa] >TYK11525.1 vacuolar protein sorting-associated protein 55-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 7.1e-46
Identity = 95/134 (70.90%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 29  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGS 88
           L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGS
Sbjct: 4   LPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGS 63

Query: 89  DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAI 148
           DSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +IGWGA+A+D SS + FVVAI
Sbjct: 64  DSSSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAI 123

Query: 149 LCYLWMSNEEDYNV 163
           LC++ MS ++DY++
Sbjct: 124 LCFMGMSEDDDYSM 137

[Close]

BLAST of Clc09G13280 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-43
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 33  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSS 92
           L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 93  LFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYL 152
           LF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWGA+ALD SS + F+VAIL Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 153 WMSNEED 160
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Clc09G13280 vs. ExPASy Swiss-Prot
Match: P47111 (Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS55 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 35/126 (27.78%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 39  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPM-SLLFFAGS--DSSSLFS 98
           ++K+++L   ++ G +L  L+CAL++N++PL  +++++L P+ + +F AG+   +S   S
Sbjct: 9   LTKIISLSGFLALGFLLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMS 68

Query: 99  ESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWMS 158
           +SS++  +   FLTG      IA+P +  H  +IG  +  +     L    +I+ + W  
Sbjct: 69  DSSNTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHLSCIMCMIGGLIIYSSIVIFKWFF 128

Query: 159 NEEDYN 162
            ++D+N
Sbjct: 129 -KKDFN 133

[Close]

BLAST of Clc09G13280 vs. ExPASy Swiss-Prot
Match: Q9UUH1 (Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps55 PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 33/125 (26.40%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 39  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPM-SLLFFAGSDSSSLFSES 98
           + K++ L  +++ G +L  L+CAL+ NW+PLL V+ ++L P+ +LL    S S     E 
Sbjct: 4   LRKIIGLSSVLAVGFMLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEE 63

Query: 99  SDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDF--SSLLAFVVAILCYLWMS 158
             + ++  +F  GA+     A+P +  +  +IG  A  +     S++  V+ +    ++ 
Sbjct: 64  DRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQ 123

Query: 159 NEEDY 161
           +EE++
Sbjct: 124 HEEEF 128

[Close]

BLAST of Clc09G13280 vs. ExPASy Swiss-Prot
Match: Q54VP1 (Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoideum OX=44689 GN=vps55 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.4e-06
Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 52  GIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGA 111
           G++   LAC + ++ +P++ V  Y L P   +     DS   FS    ++ +   FLTG 
Sbjct: 15  GLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDS---FSSEKGTFEDIGLFLTGL 74

Query: 112 SAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWM---SNEEDYN 162
                 AIP IL H+D+I   A+A   +  +     I+ +LW     N+ED N
Sbjct: 75  FITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLWFFNRHNDEDNN 124

[Close]

BLAST of Clc09G13280 vs. ExPASy TrEMBL
Match: A0A6J1DSZ0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111024101 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.4e-55
Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 30  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSD 89
           M DLG C HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+L+PM LLFFAGSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 90  SSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAIL 149
           +SSL SES DSWVNATKFLTGAS VGSIAIP ILKHA++IGWGA+ALD SSLL FVVAIL
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 150 CYLWMSNEEDYNVL 164
           CYLWMSNE+DYN L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Clc09G13280 vs. ExPASy TrEMBL
Match: A0A5N6R6S4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012387 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 96/129 (74.42%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 35  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLF 94
           SCLH  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVL+PM LLFFAGSDSSSLF
Sbjct: 11  SCLHTGKLALLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPMPLLFFAGSDSSSLF 70

Query: 95  SESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWM 154
           SES ++WVNATKFLTGAS +GS+AIPAILKHA +IGWGA+A++FSS   FV+AI+CY+ M
Sbjct: 71  SESDNNWVNATKFLTGASTIGSLAIPAILKHAGVIGWGALAMEFSSFFIFVLAIMCYIRM 130

Query: 155 SNEEDYNVL 164
           ++E+DYNVL
Sbjct: 131 NSEDDYNVL 139

[Close]

BLAST of Clc09G13280 vs. ExPASy TrEMBL
Match: A0A0A0L5B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.6e-46
Identity = 95/134 (70.90%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 29  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGS 88
           L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGS
Sbjct: 4   LPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGS 63

Query: 89  DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAI 148
           DSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +IGWGA+A+D SS + FVVAI
Sbjct: 64  DSSSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAI 123

Query: 149 LCYLWMSNEEDYNV 163
           LC++ MS ++DY++
Sbjct: 124 LCFMGMSEDDDYSM 137

[Close]

BLAST of Clc09G13280 vs. ExPASy TrEMBL
Match: A0A1S3BJT4 (vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 GN=LOC103490815 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.4e-46
Identity = 95/134 (70.90%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 29  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGS 88
           L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGS
Sbjct: 4   LPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGS 63

Query: 89  DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAI 148
           DSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +IGWGA+A+D SS + FVVAI
Sbjct: 64  DSSSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAI 123

Query: 149 LCYLWMSNEEDYNV 163
           LC++ MS ++DY++
Sbjct: 124 LCFMGMSEDDDYSM 137

[Close]

BLAST of Clc09G13280 vs. ExPASy TrEMBL
Match: A0A5D3CIX3 (Vacuolar protein sorting-associated protein 55-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001910 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.4e-46
Identity = 95/134 (70.90%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 29  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGS 88
           L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGS
Sbjct: 4   LPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGS 63

Query: 89  DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAI 148
           DSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +IGWGA+A+D SS + FVVAI
Sbjct: 64  DSSSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAI 123

Query: 149 LCYLWMSNEEDYNV 163
           LC++ MS ++DY++
Sbjct: 124 LCFMGMSEDDDYSM 137

[Close]

BLAST of Clc09G13280 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 33  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSS 92
           L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 93  LFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYL 152
           LF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWGA+ALD SS + F+VAIL Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 153 WMSNEED 160
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Clc09G13280 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 33  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSS 92
           L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 93  LFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYL 152
           LF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWGA+ALD SS + F+VAIL Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 153 WMSNEED 160
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Clc09G13280 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 33  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSS 92
           L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 93  LFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYL 152
           LF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWGA+ALD SS + F+VAIL Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 153 WMSNEED 160
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Clc09G13280 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 33  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSS 92
           L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 93  LFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYL 152
           LF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWGA+ALD SS + F+VAIL Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 153 WMSNEED 160
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Clc09G13280 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 33  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSS 92
           L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 93  LFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYL 152
           LF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWGA+ALD SS + F+VAIL Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 153 WMSNEED 160
            + +  D
Sbjct: 128 CIGDASD 134

The following BLAST results are available for this feature:

BLAST of Clc09G13280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157395.1	4.9e-55	82.84	vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP...	[more]
KAE8055554.1	2.2e-47	74.42	hypothetical protein FH972_012387 [Carpinus fangiana]	[more]
XP_004150170.1	5.4e-46	70.90	vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031...	[more]
XP_021599879.1	7.1e-46	72.87	vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY2...	[more]
XP_008448742.1	7.1e-46	70.90	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]...	[more]

BLAST of Clc09G13280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	3.4e-43	68.50	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]
P47111	1.8e-07	27.78	Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (stra...	[more]
Q9UUH1	1.1e-06	26.40	Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (str...	[more]
Q54VP1	7.4e-06	30.09	Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoide...	[more]

BLAST of Clc09G13280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSZ0	2.4e-55	82.84	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]
A0A5N6R6S4	1.1e-47	74.42	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012387 PE=3 SV=1	[more]
A0A0A0L5B3	2.6e-46	70.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1	[more]
A0A1S3BJT4	3.4e-46	70.90	vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 G...	[more]
A0A5D3CIX3	3.4e-46	70.90	Vacuolar protein sorting-associated protein 55-like protein OS=Cucumis melo var....	[more]

BLAST of Clc09G13280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	2.4e-44	68.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	2.4e-44	68.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	2.4e-44	68.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	2.4e-44	68.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	2.4e-44	68.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 42..159 e-value: 6.6E-31 score: 106.7
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 31..160
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 31..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G13280.2	Clc09G13280.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane