Clc09G13265 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G13265
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP synthase subunit alpha, chloroplastic
LocationClcChr09: 13436851 .. 13437379 (-)
RNA-Seq ExpressionClc09G13265
SyntenyClc09G13265
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTAGGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAATAATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTGTAAAAGCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGGTAAGGCAAATAGAGCTTTTGCACATTTTTGTTAATCCATGAACAAGATCTATATAGACACATAGGCCCATGGATCCATACATCTCGATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

mRNA sequence

ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTAGGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAATAATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGACACATAGGCCCATGGATCCATACATCTCGATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

Coding sequence (CDS)

ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTAGGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAATAATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGACACATAGGCCCATGGATCCATACATCTCGATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

Protein sequence

MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGGLLIHKREVLNGKSCSDTSLGRNMAFKLSYELVDVANKSGDAIHKKEETHRMTHRPMDPYISIRKESIEKERIRID
Homology
[Close]
BLAST of Clc09G13265 vs. NCBI nr
Match: DAD29483.1 (TPA_asm: hypothetical protein HUJ06_030951 [Nelumbo nucifera])

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-31
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKREVL--NGKSCSDT 97
          IGI LNLESNNVGVVLMG GL+I +   +  N  +CSDT
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQEGNSIKANRMNCSDT 99

[Close]
BLAST of Clc09G13265 vs. NCBI nr
Match: PHU09444.1 (Photosystem II protein D1 [Capsicum chinense])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIREHIEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIREHIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVL+G GLLI +R
Sbjct: 61 IGIALNLESNNVGVVLIGDGLLIQER 86

[Close]
BLAST of Clc09G13265 vs. NCBI nr
Match: YP_009509914.1 (ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica] >AXF46646.1 ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]
BLAST of Clc09G13265 vs. NCBI nr
Match: YP_009318069.1 (ATP synthase CF1 alpha subunit [Corylus fargesii] >YP_009318148.1 ATP synthase CF1 alpha subunit [Corylus avellana] >YP_009318225.1 ATP synthase CF1 alpha subunit [Corylus heterophylla] >YP_009331465.1 ATP synthase CF1 alpha subunit [Corylus chinensis] >YP_009509831.1 ATP synthase CF1 alpha subunit [Corylus mandshurica] >YP_009509997.1 ATP synthase CF1 alpha subunit [Corylus yunnanensis] >YP_009559724.1 ATP synthase CF1 alpha subunit [Corylus wangii] >YP_009714763.1 ATP synthase CF1 alpha subunit [Corylus americana] >YP_009714847.1 ATP synthase CF1 alpha subunit [Corylus ferox] >YP_009714931.1 ATP synthase CF1 alpha subunit [Corylus sieboldiana] >YP_009715015.1 ATP synthase CF1 alpha subunit [Corylus colurna] >YP_009715099.1 ATP synthase CF1 alpha subunit [Corylus jacquemontii] >YP_009715183.1 ATP synthase CF1 alpha subunit [Corylus cornuta] >AXZ70272.1 ATP synthase CF1 alpha subunit [Corylus heterophylla var. sutchuenensis] >QGK87235.1 ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica] >QGK87319.1 ATP synthase CF1 alpha subunit [Corylus kweichowensis var. brevipes] >QGK87739.1 ATP synthase CF1 alpha subunit [Corylus cornuta var. californica] >QXQ00392.1 ATP synthase CF1 alpha subunit [Corylus kweichowensis])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]
BLAST of Clc09G13265 vs. NCBI nr
Match: YP_009967243.1 (ATP synthase CF1 alpha subunit [Anthurium huixtlense] >QIP53297.1 ATP synthase CF1 alpha subunit [Anthurium huixtlense])

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-30
Identity = 79/107 (73.83%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 1   MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
           MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1   MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61  IGITLNLESNNVGVVLMG-GLLIHKREVLNGK------SCSDTSLGR 101
           IGI LNLESNNVGVVLMG GL+I +R  +         S S+  LGR
Sbjct: 61  IGIALNLESNNVGVVLMGDGLMIQERSSVKATGRIAQISVSEAYLGR 107

[Close]
BLAST of Clc09G13265 vs. ExPASy Swiss-Prot
Match: Q49L13 (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]
BLAST of Clc09G13265 vs. ExPASy Swiss-Prot
Match: B1NWD5 (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]
BLAST of Clc09G13265 vs. ExPASy Swiss-Prot
Match: Q14FH2 (ATP synthase subunit alpha, chloroplastic OS=Populus alba OX=43335 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]
BLAST of Clc09G13265 vs. ExPASy Swiss-Prot
Match: A4GYP3 (ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]
BLAST of Clc09G13265 vs. ExPASy Swiss-Prot
Match: Q8S8Y3 (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-32
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GLLI +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLLIQE 85

[Close]
BLAST of Clc09G13265 vs. ExPASy TrEMBL
Match: A0A2G3BSI9 (Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_21304 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.6e-31
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIREHIEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIREHIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVL+G GLLI +R
Sbjct: 61 IGIALNLESNNVGVVLIGDGLLIQER 86

[Close]
BLAST of Clc09G13265 vs. ExPASy TrEMBL
Match: A0A385KBW2 (ATP synthase subunit alpha, chloroplastic OS=Corylus heterophylla var. sutchuenensis OX=126982 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]
BLAST of Clc09G13265 vs. ExPASy TrEMBL
Match: A0A345BAT7 (ATP synthase subunit alpha, chloroplastic OS=Corylus mandshurica OX=139401 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]
BLAST of Clc09G13265 vs. ExPASy TrEMBL
Match: A0A1I9RG22 (ATP synthase subunit alpha, chloroplastic OS=Corylus avellana OX=13451 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]
BLAST of Clc09G13265 vs. ExPASy TrEMBL
Match: A0A1I9RFU2 (ATP synthase subunit alpha, chloroplastic OS=Corylus fargesii OX=554072 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]
BLAST of Clc09G13265 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-33
Identity = 74/85 (87.06%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REV IVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]
BLAST of Clc09G13265 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 5   RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGIT 64
           RA E++N+    I  +    ++   G V+ VGDGIA +Y L+E+  GE+V F  G  G+ 
Sbjct: 276 RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 335

Query: 65  LNLESNNVGVVLMGG 80
           LNLE+ NVG+V+ GG
Sbjct: 336 LNLENENVGIVVFGG 350

[Close]
BLAST of Clc09G13265 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 5  RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGIT 64
          RA E++N+    I  +    ++   G V+ VGDGIA +Y L+E+  GE+V F  G  G+ 
Sbjct: 6  RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 65

Query: 65 LNLESNNVGVVLMGG 80
          LNLE+ NVG+V+ GG
Sbjct: 66 LNLENENVGIVVFGG 80

[Close]
BLAST of Clc09G13265 vs. TAIR 10
Match: ATCG01240.1 (ribosomal protein S7 )

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 99  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM 131
           GRNMAFKLS ELVD A  SGDAI KKEETHRM
Sbjct: 113 GRNMAFKLSSELVDAAKGSGDAIRKKEETHRM 144

[Close]
BLAST of Clc09G13265 vs. TAIR 10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 99  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM 131
           GRNMAFKLS ELVD A  SGDAI KKEETHRM
Sbjct: 113 GRNMAFKLSSELVDAAKGSGDAIRKKEETHRM 144

The following BLAST results are available for this feature:
BLAST of Clc09G13265 vs. NCBI nr
Match NameE-valueIdentityDescription
DAD29483.16.1e-3179.80TPA_asm: hypothetical protein HUJ06_030951 [Nelumbo nucifera][more]
PHU09444.11.4e-3088.37Photosystem II protein D1 [Capsicum chinense][more]
YP_009509914.12.3e-3087.21ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica] >AXF46646.1 ATP sy... [more]
YP_009318069.12.3e-3087.21ATP synthase CF1 alpha subunit [Corylus fargesii] >YP_009318148.1 ATP synthase C... [more]
YP_009967243.13.0e-3073.83ATP synthase CF1 alpha subunit [Anthurium huixtlense] >QIP53297.1 ATP synthase C... [more]
BLAST of Clc09G13265 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q49L138.8e-3388.24ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
B1NWD58.8e-3388.24ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA P... [more]
Q14FH28.8e-3388.24ATP synthase subunit alpha, chloroplastic OS=Populus alba OX=43335 GN=atpA PE=3 ... [more]
A4GYP38.8e-3388.24ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpA... [more]
Q8S8Y32.0e-3288.24ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA ... [more]
BLAST of Clc09G13265 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G3BSI96.6e-3188.37Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_21304 PE=3 SV=1[more]
A0A385KBW21.1e-3087.21ATP synthase subunit alpha, chloroplastic OS=Corylus heterophylla var. sutchuene... [more]
A0A345BAT71.1e-3087.21ATP synthase subunit alpha, chloroplastic OS=Corylus mandshurica OX=139401 GN=at... [more]
A0A1I9RG221.1e-3087.21ATP synthase subunit alpha, chloroplastic OS=Corylus avellana OX=13451 GN=atpA P... [more]
A0A1I9RFU21.1e-3087.21ATP synthase subunit alpha, chloroplastic OS=Corylus fargesii OX=554072 GN=atpA ... [more]
BLAST of Clc09G13265 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00120.13.1e-3387.06ATP synthase subunit alpha [more]
AT2G07698.11.4e-1242.67ATPase, F1 complex, alpha subunit protein [more]
ATMG01190.11.4e-1242.67ATP synthase subunit 1 [more]
ATCG01240.15.9e-0884.38ribosomal protein S7 [more]
ATCG00900.15.9e-0884.38Ribosomal protein S7p/S5e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..154
NoneNo IPR availablePANTHERPTHR48082:SF5ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTICcoord: 2..139
NoneNo IPR availablePANTHERPTHR48082ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 2..139
NoneNo IPR availableCDDcd18116ATP-synt_F1_alpha_Ncoord: 28..78
e-value: 2.29989E-21
score: 79.8049
IPR036823Ribosomal protein S7 domain superfamilyGENE3D1.10.455.10Ribosomal protein S7 domaincoord: 93..133
e-value: 4.8E-7
score: 31.6
IPR036823Ribosomal protein S7 domain superfamilySUPERFAMILY47973Ribosomal protein S7coord: 98..130
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 99..131
e-value: 7.7E-7
score: 28.9
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyGENE3D2.40.30.20coord: 2..92
e-value: 7.5E-27
score: 94.9
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 29..79
e-value: 1.7E-12
score: 47.7
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilySUPERFAMILY50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 11..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G13265.1Clc09G13265.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0046034 ATP metabolic process
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism