Clc09G13250 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G13250
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 13377072 .. 13379178 (-)
RNA-Seq ExpressionClc09G13250
SyntenyClc09G13250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCAATGTGCTTCCATATTACATCAATATTGATCTAACTCTAGAGCTGTTTATCCAAACTCACGATGGAACCCTGAATTTCGAGGTCATGGCCCAGGGCCCATCTGCTCCCACTGAGCTTGTCACTAACACTGCCGATGACACTGATGCTTATCTTCTTTCTTGTTGCTCAACTTGGCATGCTTGCCCACTTATCTTGGTGTGTTGAATGATGCACTGTCTTCCTCAATTGCATCAGGACATTTCTCTTGGCTCTTTGTCTTTGCCAAATGTGTCGACAATCTTGTGTCACCCTTGTACGGTTTGCACAAGTGGGGTAGCAATCTACTACCTCAAAGTTAGATTGTGACACTAAGCATCTTGTGGTGCCTTGGTCTAACCTCTTTTGGTTCGGGGGAAATATTCTTAGGCATGCTTCCATTTCTTGGCTTGTTATTCAGACTCGGTTGCAAACTCGTGATTGTGTTAGACGATGGTGTTTTAGTATCCCTATTGGTTGTGTTTATTGTACTATTGGAGTGGAGTCTAGGGATCATTTATCTTTTCAGTGTTCTTTTAGTAAGGCTATTTGGGAGGACAAGCTTTTGTAGGGTCAATGTTCCAATACAATATTGTATTGGGATATGTAGCTCGCTTGGATTTGCCATTTTAGTAAAGGAAATCAGCTGAGGCGCAAGGTTTATAGAGTTGCTTGGTGTGTTGTTGTTTACCATGTTTGGCACGAATGTAATAGGCGTGTCCATGGTGCCCCTTTGTGATTCCTCCTCAGGTGATTTAGAGTTGCTTGGTGTGTTGTTGTTTACCATGTTTGGCACGAATGTAATAGGCGTGTCCATGGTGCCCCTTTGTGATTCCTCCTCAGGTGATTAGTTTGGATATTCCGATTGAGATTCTTATTTATTGTTCTAAGTGGTTGGGGGCTTCTATTGTGGGAGCCAAGTGGACTTTTCTCCTTGAAACTTTTTTAGTTGTGTGTGGTTTTTTTAATTTTTTGTTGATTTGTTGTTTTGTTTGTGCCTTAACTTGAGGGGGTGAGATTCCTCTCTCTAGAAATATATTATCTTTGCAAAAAATATATATATAAATGGATATAAATATAGCTAACAAAATTTAAAAATTAAAAAAAAAAGGTGCATTTTCTTATTTATTTATGGTTATTTAATATTATCATTATTTTGTAATGAAAACATCGCATGTGTGTATTTGACTGACAATGTACAAAAAGTTGAAGCTACAGTATAAACTGAAACTTTATTTTGTAGAAAGGGAAGAATACTCTCCAATAAATAGATGATGGTTGAGCGGGAAAAAATATTTCAACTACGTAGAATGTTCGTTGCTCATTCCTAGTTCCTCCATTTTTCCGCTGTAAGCTTTCGTCCTCCATTTCTTCTCTTCAAATTCTTCCAATCTTTGAAACTGAAACACAGATTCCACAGTTTTCTTCATTGCCATGGATGCAGTGGTGTGGTCCGCAATCGCAAGGATCCGTACTCTCTCACATGTCCACTCTCTCTCTGTTTCTTTCTTTATTTGTGTAGACGCAGAAGCTACGTACGAGTCCGTCAGAGGAAGAAACGAAACCATGATTGAAGTAATCTCCTATGCGTCTTTTCGATTAGAATAGTTCTTTTGGCCTTTCATTTCGTCAATGTTTGATCCTTGTTTTTGAAAATGTGTTGTTTGCTTGTGATTTTGGTAAGTTTAATTTTCGTTTCTTGTTTCTTTCGGTTGGAAGGATTTCGATATGATTCTTAAATCTCTGTATCTCTCTCTCTCTCTTTGTTTGGTTGTTTCCTAAGGCGTTCCGATGGGGAATATAAGTTTTTCTGAGGATTTAGTCTTCGAAAAATAGTAATTTGCTTCGTAAATCGGAGTTCAGGATGTTTATGATTACTGTATGTGCCTTTTTGTGTTAATGTATTATCTTTTTCACGAGTAATCTCTTGAGCTGAGATGTCTGTATGCATTTGTTTTACTTTTTGCTCATTTGTGAAATTTCGATTTGTTGTTCGCTGTTTTTCTTTATATAAATATGTTGAAATTTCCATATCAAATGAGGATGATTTGAAGATGTTTGAGTTTTTGTCGATGAGCAGTGA

mRNA sequence

ATGAAATTCAATGTGCTTCCATATTACATCAATATTGATCTAACTCTAGAGCTGTTTATCCAAACTCACGATGGAACCCTGAATTTCGAGGTCATGGCCCAGGGCCCATCTGCTCCCACTGAGCTTGTCACTAACACTGCCGATGACACTGATGCTTATCTTCTTTCTTGTTGCTCAACTTGGCATGCTTGCCCACTTATCTTGGCGTGTCCATGGTGCCCCTTTGTGATTCCTCCTCAGAATGTTCGTTGCTCATTCCTAGTTCCTCCATTTTTCCGCTTGGTGTGGTCCGCAATCGCAAGGATCCGTACTCTCTCACATGTCCACTCTCTCTCTGTTTCTTTCTTTATTTGTGTAGACGCAGAAGCTACGTACGAGTCCGTCAGAGGAAGAAACGAAACCATGATTGAATGA

Coding sequence (CDS)

ATGAAATTCAATGTGCTTCCATATTACATCAATATTGATCTAACTCTAGAGCTGTTTATCCAAACTCACGATGGAACCCTGAATTTCGAGGTCATGGCCCAGGGCCCATCTGCTCCCACTGAGCTTGTCACTAACACTGCCGATGACACTGATGCTTATCTTCTTTCTTGTTGCTCAACTTGGCATGCTTGCCCACTTATCTTGGCGTGTCCATGGTGCCCCTTTGTGATTCCTCCTCAGAATGTTCGTTGCTCATTCCTAGTTCCTCCATTTTTCCGCTTGGTGTGGTCCGCAATCGCAAGGATCCGTACTCTCTCACATGTCCACTCTCTCTCTGTTTCTTTCTTTATTTGTGTAGACGCAGAAGCTACGTACGAGTCCGTCAGAGGAAGAAACGAAACCATGATTGAATGA

Protein sequence

MKFNVLPYYINIDLTLELFIQTHDGTLNFEVMAQGPSAPTELVTNTADDTDAYLLSCCSTWHACPLILACPWCPFVIPPQNVRCSFLVPPFFRLVWSAIARIRTLSHVHSLSVSFFICVDAEATYESVRGRNETMIE
Homology
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BLAST of Clc09G13250 vs. NCBI nr
Match: KAE8651457.1 (hypothetical protein Csa_001915, partial [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-05
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 94  LVWSAIARIRTLSHVHSLSV-SFFICVDAEATYESVRG-RNETMIE 138
           +VWSAI RIR LSH HSLS+ S FICVDAE TY+SVR   +ET+I+
Sbjct: 4   VVWSAIVRIRNLSHFHSLSISSCFICVDAEPTYQSVRATTHETVID 49

The following BLAST results are available for this feature:
BLAST of Clc09G13250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651457.16.7e-0567.39hypothetical protein Csa_001915, partial [Cucumis sativus][more]
BLAST of Clc09G13250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G13250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G13250 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G13250.1Clc09G13250.1mRNA