Clc09G12310 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCAAAAATATTAAGGAATTATGCGGGTTCCTCGGGTTGACTGAGTACTATCGAAAATTTGTTGCAAACTATGGGTCGATAGCACTGCCATTGACACAATTGCTAAAAAAGGAAAAATTTTCATGGAATGTGGAAGTGGATGAAGCTTGTCAAAGGTTAAAATCAATGATGGTGGAGATACTGATATTGGGATTGCCCAATTTTAAAGAGACATTTGAGATTGAAAGCGATGCTTCAGGTGTGGGAACAGGGAAATGTTGTCCTTTGGCCTATTTCAGTCAAGCTTTACTTTCAACACACCGTTACAAAGCAGTGTATGAATGGGAATTAATGGCGATATTGTTTGCCATTCAAAAGTGGCGATCTTACTTGTTGGAGAGGCATTTTGTGGTACGAACAAACCAGAAGAGTCTAAACTTTTTGCTAGAACAACGTGTGATTGCCGGGGAGTACCAGCGTTGGATTGCTAAGCTATTGGGATATGATTTTCACATTGAATACAAGCATGGAAGAGAGAATTGATGCTCTGTTGAGACTACCTCCAGCTCTTGAATTGGGATTGCTAAGTGTGGTTGAGGGCCTAAATACAGTAAGTTTTTGCTGATTAGGTAGTAGAAGATCTGGTATTGAGTGAGATTCAGCAAATGCTTAGAGCTGGACAGTCAGCCCTAAGGGGTATTCTCTACGGGGAGACATTTTATACTACAAAGGCCCCGGTTAGTATTACAAGAAAATTCACCAACCATACCTCTGTTACTAGCGGAATTCCATTGCAGCCCTATTGGAGGACACCAAGGAGCACTCAAAACGTACCAAAGGTTAGCTAGAGATGTGTATTGGACCGATATGAAAGCCAAGGTACGTTCTTTTGTAATTGAATGCTCTGTCGGCCAGCAAGCAAAGCATTTAACACTGGCACCAGCTAGTTTACTTCAAGCTTTGCCTATTTCGGACAAAGTTTGGGAGGACATATCAATGGACTTCATTGAGGGTCTACACAAATAGGAGGGGTATGATACTATTATGGTAGTAGTTGATAGATTGTCGAAATACACCCATTTTATCCTCCTTAAGCATCCATTTAATGCAAAATCTGTTGCTGCTGTATTTGTTAAAGAAGTGGTGAGACTTCATGGGTATCCTTAGAGTATTGTGTCGGATAGGGATAAAATATTCACTAGCCTTTTTTGGGAGGAATTGTTCTGGCCATTGGGGACTCAACTATGCCGAAGCATGGCATATCACCCACAAACAGATGGCGAGGCGGAGGTTGTAAATTGGAGCCTTGAAACTTACCTCCATTTCTTTGCTATGGGCACGCCAAAATAGTGGGCAAGGTGGATACCTTGGGCGGAGTTCAGTTACAACACATCTTTTCATACAACATCGCATATGACACCATTCGAGGTATTATATGGTTATTCTCCACTCTGTATATATGAACAAGGGGTAAGTGTTGTGAGTGAAGTGGACAATATGCTTCGTGAAAGAGATATGATGTTGAAAAAGCTGATGGCTACTTTACAGAGGGCTCAACAACACACGACTTGAGCTGCCAACGAAAAACGACGTGAGGTGTAGTATGACATTGGGTGTTGGGTTTATTTGAAGCTACGCCCATACCGACCATTATCCTTAAGTTCCCAGACGCATCCTAAGCTTGCACCATGTTATATTGGTCCTTTTCAGGTAACTGCACGAGTGGGGAAAGTGGCATATAGATTTGCCTTACCAGCAGATTCGGGAATTCATTCGGTGTTCCATGTGTCGTTACGATCAACGGTAGAAATAATCTACTGAATTTCCCGATTCCACCAAATTTAGCCACTAATTTATCGTTTTCCCTACAACCCGCGTAGGTGTTTGGTGTGTGCGACTCGCCTACGAAGGAGGGGATCGTAGAAGTTCTAATCCGGTGGGAAAATGGGCTGCCTATTGATGCTACTTGGGTGGTTGTTGCAGTCATTAAAGAACAATATCCAGATTTTTACCTTGAGGACAAGGTGGCTCTTTGGGGGCAGGTAATGCTAGGCCTAAAATAACCAAGGTGTATATTTGTAGACGTGGTAAAGAGAAGAGAGGTAATATCGGGTAAAGGAAATAGGTAATTTTGGGACCCTAGGAATATTTGTTAGTTAGGGGTCTTGAGAGAGAGGGTATTGAAATGGTTGGGTTGTGAGGGGGGGAGGGGTATCTTTTTGGCTTGTAAACATTCTCTTGAAGAGATCTTGGAGAGGAAGGGGAACTTTCAAATTCTACCTCTGTTGTTGATAAATAAATTGTGGCTGAGGCCTTATCAATGTGTTACTGACCTTATAACTTAATTATATAATGATTTTTCTTTAGATACTCTGATTTCTATCAATGGTCCATTAATACAGTCTACAGCTCCTTCTTCTGTCCATAGATATCACTTCATATGCTCCCATAAGTTTTTTGATCCTCAAAGATTGTTACCTGTTTAGTGCATCTCATTTAGAATACTTAAAAGGCAGTTGAGAATGATTGATATATCTATCTAGGTCAATTTTAACCTTGAGATTATTTGTTCATCTCATGTCTTTATTACTCATTCTGGCAAGAAATGATTACATATGTCTAAGCCTTTCAAATTATGGGACAAATCCTTTCAAATGGCTGCTTATTTCATCTTTACTTTGTTAGATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATCCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACTGTTTCTGATCTATATCACATTCATGACTCGGAGTTGACCATCACTTCTTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTCATAA ATGACCAAAAATATTAAGGAATTATGCGGGTTCCTCGGGTTGACTGAGTACTATCGAAAATTTGTTGCAAACTATGGGTCGATAGCACTGCCATTGACACAATTGCTAAAAAAGGAAAAATTTTCATGGAATGTGGAAGTGGATGAAGCTTGTCAAAGGTTAAAATCAATGATGGTGGAGATACTGATATTGGGATTGCCCAATTTTAAAGAGACATTTGAGATTGAAAGCGATGCTTCAGGTGTGGGAACAGGGAAATGTTGTCCTTTGGCCTATTTCAGTCAAGCTTTACTTTCAACACACCGTTACAAAGCAGTGTATGAATGGGAATTAATGGCGATATTGTTTGCCATTCAAAAGTGGCGATCTTACTTGTTGGAGAGGCATTTTGTGGTAGTAGAAGATCTGGTATTGAGTGAGATTCAGCAAATGCTTAGAGCTGGACAGTCAGCCCTAAGGGCGGAATTCCATTGCAGCCCTATTGGAGGACACCAAGGAGCACTCAAAACGTACCAAAGGTTAGCTAGAGATGTGTATTGGACCGATATGAAAGCCAAGAGTATTGTGTCGGATAGGGATAAAATATTCACTAGCCTTTTTTGGGAGGAATTGTTCTGGCCATTGGGGACTCAACTATGCCGAAGCATGGCATATCACCCACAAACAGATGGCGAGGCGGAGGTAACTGCACGAGTGGGGAAAGTGGCATATAGATTTGCCTTACCAGCAGATTCGGGAATTCATTCGGTGTTCCATGTGTCGTTACGATCAACGGTGTTTGGTGTGTGCGACTCGCCTACGAAGGAGGGGATCGTAGAAGTTCTAATCCGGTGGGAAAATGGGCTGCCTATTGATGCTACTTGGGTGGTTGTTGCAGTCATTAAAGAACAATATCCAGATTTTTACCTTGAGGACAAGGTGGCTCTTTGGGGGCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTCATAA ATGACCAAAAATATTAAGGAATTATGCGGGTTCCTCGGGTTGACTGAGTACTATCGAAAATTTGTTGCAAACTATGGGTCGATAGCACTGCCATTGACACAATTGCTAAAAAAGGAAAAATTTTCATGGAATGTGGAAGTGGATGAAGCTTGTCAAAGGTTAAAATCAATGATGGTGGAGATACTGATATTGGGATTGCCCAATTTTAAAGAGACATTTGAGATTGAAAGCGATGCTTCAGGTGTGGGAACAGGGAAATGTTGTCCTTTGGCCTATTTCAGTCAAGCTTTACTTTCAACACACCGTTACAAAGCAGTGTATGAATGGGAATTAATGGCGATATTGTTTGCCATTCAAAAGTGGCGATCTTACTTGTTGGAGAGGCATTTTGTGGTAGTAGAAGATCTGGTATTGAGTGAGATTCAGCAAATGCTTAGAGCTGGACAGTCAGCCCTAAGGGCGGAATTCCATTGCAGCCCTATTGGAGGACACCAAGGAGCACTCAAAACGTACCAAAGGTTAGCTAGAGATGTGTATTGGACCGATATGAAAGCCAAGAGTATTGTGTCGGATAGGGATAAAATATTCACTAGCCTTTTTTGGGAGGAATTGTTCTGGCCATTGGGGACTCAACTATGCCGAAGCATGGCATATCACCCACAAACAGATGGCGAGGCGGAGGTAACTGCACGAGTGGGGAAAGTGGCATATAGATTTGCCTTACCAGCAGATTCGGGAATTCATTCGGTGTTCCATGTGTCGTTACGATCAACGGTGTTTGGTGTGTGCGACTCGCCTACGAAGGAGGGGATCGTAGAAGTTCTAATCCGGTGGGAAAATGGGCTGCCTATTGATGCTACTTGGGTGGTTGTTGCAGTCATTAAAGAACAATATCCAGATTTTTACCTTGAGGACAAGGTGGCTCTTTGGGGGCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTCATAA MTKNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILILGLPNFKETFEIESDASGVGTGKCCPLAYFSQALLSTHRYKAVYEWELMAILFAIQKWRSYLLERHFVVVEDLVLSEIQQMLRAGQSALRAEFHCSPIGGHQGALKTYQRLARDVYWTDMKAKSIVSDRDKIFTSLFWEELFWPLGTQLCRSMAYHPQTDGEAEVTARVGKVAYRFALPADSGIHSVFHVSLRSTVFGVCDSPTKEGIVEVLIRWENGLPIDATWVVVAVIKEQYPDFYLEDKVALWGQDGRQWGRGRSGGQVRDEYRTDYDPDILFFS Homology
BLAST of Clc09G12310 vs. NCBI nr
Match: KAA0031986.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 201.1 bits (510), Expect = 1.6e-47 Identity = 164/546 (30.04%), Postives = 210/546 (38.46%), Query Frame = 0
BLAST of Clc09G12310 vs. NCBI nr
Match: CAN66228.1 (hypothetical protein VITISV_012977 [Vitis vinifera]) HSP 1 Score: 186.0 bits (471), Expect = 5.3e-43 Identity = 157/537 (29.24%), Postives = 204/537 (37.99%), Query Frame = 0
BLAST of Clc09G12310 vs. NCBI nr
Match: OAO89457.1 (hypothetical protein AXX17_ATUG00140 [Arabidopsis thaliana]) HSP 1 Score: 181.4 bits (459), Expect = 1.3e-41 Identity = 113/308 (36.69%), Postives = 147/308 (47.73%), Query Frame = 0
BLAST of Clc09G12310 vs. NCBI nr
Match: KAF8393178.1 (hypothetical protein HHK36_021419 [Tetracentron sinense]) HSP 1 Score: 179.9 bits (455), Expect = 3.8e-41 Identity = 126/398 (31.66%), Postives = 164/398 (41.21%), Query Frame = 0
BLAST of Clc09G12310 vs. NCBI nr
Match: KYP46337.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cajanus cajan]) HSP 1 Score: 177.9 bits (450), Expect = 1.4e-40 Identity = 111/324 (34.26%), Postives = 153/324 (47.22%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.7e-18 Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.3e-17 Identity = 52/137 (37.96%), Postives = 81/137 (59.12%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 3.8e-12 Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11 Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.5e-11 Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A5A7SPQ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00710 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48 Identity = 164/546 (30.04%), Postives = 210/546 (38.46%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A5C0Y9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012977 PE=4 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 2.6e-43 Identity = 157/537 (29.24%), Postives = 204/537 (37.99%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A178U8F9 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG00140 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 6.3e-42 Identity = 113/308 (36.69%), Postives = 147/308 (47.73%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A151RUW5 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan OX=3821 GN=KK1_032059 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 7.0e-41 Identity = 111/324 (34.26%), Postives = 153/324 (47.22%), Query Frame = 0
BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A5A7SNK3 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00210 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40 Identity = 168/627 (26.79%), Postives = 209/627 (33.33%), Query Frame = 0
BLAST of Clc09G12310 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 71.2 bits (173), Expect = 1.8e-12 Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Clc09G12310 vs. TAIR 10
Match: AT5G44200.1 (CAP-binding protein 20 ) HSP 1 Score: 59.3 bits (142), Expect = 6.9e-09 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0
BLAST of Clc09G12310 vs. TAIR 10
Match: AT5G44200.2 (CAP-binding protein 20 ) HSP 1 Score: 59.3 bits (142), Expect = 6.9e-09 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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