Clc09G12310 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G12310
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationClcChr09: 11065761 .. 11068704 (+)
RNA-Seq ExpressionClc09G12310
SyntenyClc09G12310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAAAAATATTAAGGAATTATGCGGGTTCCTCGGGTTGACTGAGTACTATCGAAAATTTGTTGCAAACTATGGGTCGATAGCACTGCCATTGACACAATTGCTAAAAAAGGAAAAATTTTCATGGAATGTGGAAGTGGATGAAGCTTGTCAAAGGTTAAAATCAATGATGGTGGAGATACTGATATTGGGATTGCCCAATTTTAAAGAGACATTTGAGATTGAAAGCGATGCTTCAGGTGTGGGAACAGGGAAATGTTGTCCTTTGGCCTATTTCAGTCAAGCTTTACTTTCAACACACCGTTACAAAGCAGTGTATGAATGGGAATTAATGGCGATATTGTTTGCCATTCAAAAGTGGCGATCTTACTTGTTGGAGAGGCATTTTGTGGTACGAACAAACCAGAAGAGTCTAAACTTTTTGCTAGAACAACGTGTGATTGCCGGGGAGTACCAGCGTTGGATTGCTAAGCTATTGGGATATGATTTTCACATTGAATACAAGCATGGAAGAGAGAATTGATGCTCTGTTGAGACTACCTCCAGCTCTTGAATTGGGATTGCTAAGTGTGGTTGAGGGCCTAAATACAGTAAGTTTTTGCTGATTAGGTAGTAGAAGATCTGGTATTGAGTGAGATTCAGCAAATGCTTAGAGCTGGACAGTCAGCCCTAAGGGGTATTCTCTACGGGGAGACATTTTATACTACAAAGGCCCCGGTTAGTATTACAAGAAAATTCACCAACCATACCTCTGTTACTAGCGGAATTCCATTGCAGCCCTATTGGAGGACACCAAGGAGCACTCAAAACGTACCAAAGGTTAGCTAGAGATGTGTATTGGACCGATATGAAAGCCAAGGTACGTTCTTTTGTAATTGAATGCTCTGTCGGCCAGCAAGCAAAGCATTTAACACTGGCACCAGCTAGTTTACTTCAAGCTTTGCCTATTTCGGACAAAGTTTGGGAGGACATATCAATGGACTTCATTGAGGGTCTACACAAATAGGAGGGGTATGATACTATTATGGTAGTAGTTGATAGATTGTCGAAATACACCCATTTTATCCTCCTTAAGCATCCATTTAATGCAAAATCTGTTGCTGCTGTATTTGTTAAAGAAGTGGTGAGACTTCATGGGTATCCTTAGAGTATTGTGTCGGATAGGGATAAAATATTCACTAGCCTTTTTTGGGAGGAATTGTTCTGGCCATTGGGGACTCAACTATGCCGAAGCATGGCATATCACCCACAAACAGATGGCGAGGCGGAGGTTGTAAATTGGAGCCTTGAAACTTACCTCCATTTCTTTGCTATGGGCACGCCAAAATAGTGGGCAAGGTGGATACCTTGGGCGGAGTTCAGTTACAACACATCTTTTCATACAACATCGCATATGACACCATTCGAGGTATTATATGGTTATTCTCCACTCTGTATATATGAACAAGGGGTAAGTGTTGTGAGTGAAGTGGACAATATGCTTCGTGAAAGAGATATGATGTTGAAAAAGCTGATGGCTACTTTACAGAGGGCTCAACAACACACGACTTGAGCTGCCAACGAAAAACGACGTGAGGTGTAGTATGACATTGGGTGTTGGGTTTATTTGAAGCTACGCCCATACCGACCATTATCCTTAAGTTCCCAGACGCATCCTAAGCTTGCACCATGTTATATTGGTCCTTTTCAGGTAACTGCACGAGTGGGGAAAGTGGCATATAGATTTGCCTTACCAGCAGATTCGGGAATTCATTCGGTGTTCCATGTGTCGTTACGATCAACGGTAGAAATAATCTACTGAATTTCCCGATTCCACCAAATTTAGCCACTAATTTATCGTTTTCCCTACAACCCGCGTAGGTGTTTGGTGTGTGCGACTCGCCTACGAAGGAGGGGATCGTAGAAGTTCTAATCCGGTGGGAAAATGGGCTGCCTATTGATGCTACTTGGGTGGTTGTTGCAGTCATTAAAGAACAATATCCAGATTTTTACCTTGAGGACAAGGTGGCTCTTTGGGGGCAGGTAATGCTAGGCCTAAAATAACCAAGGTGTATATTTGTAGACGTGGTAAAGAGAAGAGAGGTAATATCGGGTAAAGGAAATAGGTAATTTTGGGACCCTAGGAATATTTGTTAGTTAGGGGTCTTGAGAGAGAGGGTATTGAAATGGTTGGGTTGTGAGGGGGGGAGGGGTATCTTTTTGGCTTGTAAACATTCTCTTGAAGAGATCTTGGAGAGGAAGGGGAACTTTCAAATTCTACCTCTGTTGTTGATAAATAAATTGTGGCTGAGGCCTTATCAATGTGTTACTGACCTTATAACTTAATTATATAATGATTTTTCTTTAGATACTCTGATTTCTATCAATGGTCCATTAATACAGTCTACAGCTCCTTCTTCTGTCCATAGATATCACTTCATATGCTCCCATAAGTTTTTTGATCCTCAAAGATTGTTACCTGTTTAGTGCATCTCATTTAGAATACTTAAAAGGCAGTTGAGAATGATTGATATATCTATCTAGGTCAATTTTAACCTTGAGATTATTTGTTCATCTCATGTCTTTATTACTCATTCTGGCAAGAAATGATTACATATGTCTAAGCCTTTCAAATTATGGGACAAATCCTTTCAAATGGCTGCTTATTTCATCTTTACTTTGTTAGATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATCCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACTGTTTCTGATCTATATCACATTCATGACTCGGAGTTGACCATCACTTCTTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTCATAA

mRNA sequence

ATGACCAAAAATATTAAGGAATTATGCGGGTTCCTCGGGTTGACTGAGTACTATCGAAAATTTGTTGCAAACTATGGGTCGATAGCACTGCCATTGACACAATTGCTAAAAAAGGAAAAATTTTCATGGAATGTGGAAGTGGATGAAGCTTGTCAAAGGTTAAAATCAATGATGGTGGAGATACTGATATTGGGATTGCCCAATTTTAAAGAGACATTTGAGATTGAAAGCGATGCTTCAGGTGTGGGAACAGGGAAATGTTGTCCTTTGGCCTATTTCAGTCAAGCTTTACTTTCAACACACCGTTACAAAGCAGTGTATGAATGGGAATTAATGGCGATATTGTTTGCCATTCAAAAGTGGCGATCTTACTTGTTGGAGAGGCATTTTGTGGTAGTAGAAGATCTGGTATTGAGTGAGATTCAGCAAATGCTTAGAGCTGGACAGTCAGCCCTAAGGGCGGAATTCCATTGCAGCCCTATTGGAGGACACCAAGGAGCACTCAAAACGTACCAAAGGTTAGCTAGAGATGTGTATTGGACCGATATGAAAGCCAAGAGTATTGTGTCGGATAGGGATAAAATATTCACTAGCCTTTTTTGGGAGGAATTGTTCTGGCCATTGGGGACTCAACTATGCCGAAGCATGGCATATCACCCACAAACAGATGGCGAGGCGGAGGTAACTGCACGAGTGGGGAAAGTGGCATATAGATTTGCCTTACCAGCAGATTCGGGAATTCATTCGGTGTTCCATGTGTCGTTACGATCAACGGTGTTTGGTGTGTGCGACTCGCCTACGAAGGAGGGGATCGTAGAAGTTCTAATCCGGTGGGAAAATGGGCTGCCTATTGATGCTACTTGGGTGGTTGTTGCAGTCATTAAAGAACAATATCCAGATTTTTACCTTGAGGACAAGGTGGCTCTTTGGGGGCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTCATAA

Coding sequence (CDS)

ATGACCAAAAATATTAAGGAATTATGCGGGTTCCTCGGGTTGACTGAGTACTATCGAAAATTTGTTGCAAACTATGGGTCGATAGCACTGCCATTGACACAATTGCTAAAAAAGGAAAAATTTTCATGGAATGTGGAAGTGGATGAAGCTTGTCAAAGGTTAAAATCAATGATGGTGGAGATACTGATATTGGGATTGCCCAATTTTAAAGAGACATTTGAGATTGAAAGCGATGCTTCAGGTGTGGGAACAGGGAAATGTTGTCCTTTGGCCTATTTCAGTCAAGCTTTACTTTCAACACACCGTTACAAAGCAGTGTATGAATGGGAATTAATGGCGATATTGTTTGCCATTCAAAAGTGGCGATCTTACTTGTTGGAGAGGCATTTTGTGGTAGTAGAAGATCTGGTATTGAGTGAGATTCAGCAAATGCTTAGAGCTGGACAGTCAGCCCTAAGGGCGGAATTCCATTGCAGCCCTATTGGAGGACACCAAGGAGCACTCAAAACGTACCAAAGGTTAGCTAGAGATGTGTATTGGACCGATATGAAAGCCAAGAGTATTGTGTCGGATAGGGATAAAATATTCACTAGCCTTTTTTGGGAGGAATTGTTCTGGCCATTGGGGACTCAACTATGCCGAAGCATGGCATATCACCCACAAACAGATGGCGAGGCGGAGGTAACTGCACGAGTGGGGAAAGTGGCATATAGATTTGCCTTACCAGCAGATTCGGGAATTCATTCGGTGTTCCATGTGTCGTTACGATCAACGGTGTTTGGTGTGTGCGACTCGCCTACGAAGGAGGGGATCGTAGAAGTTCTAATCCGGTGGGAAAATGGGCTGCCTATTGATGCTACTTGGGTGGTTGTTGCAGTCATTAAAGAACAATATCCAGATTTTTACCTTGAGGACAAGGTGGCTCTTTGGGGGCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTCATAA

Protein sequence

MTKNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILILGLPNFKETFEIESDASGVGTGKCCPLAYFSQALLSTHRYKAVYEWELMAILFAIQKWRSYLLERHFVVVEDLVLSEIQQMLRAGQSALRAEFHCSPIGGHQGALKTYQRLARDVYWTDMKAKSIVSDRDKIFTSLFWEELFWPLGTQLCRSMAYHPQTDGEAEVTARVGKVAYRFALPADSGIHSVFHVSLRSTVFGVCDSPTKEGIVEVLIRWENGLPIDATWVVVAVIKEQYPDFYLEDKVALWGQDGRQWGRGRSGGQVRDEYRTDYDPDILFFS
Homology
BLAST of Clc09G12310 vs. NCBI nr
Match: KAA0031986.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-47
Identity = 164/546 (30.04%), Postives = 210/546 (38.46%), Query Frame = 0

Query: 4    NIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILI 63
            N++E+ GFLGLT YYR+FV NYGS+A PLTQLLKK  + W     E  ++LK  M+ + I
Sbjct: 685  NVREVRGFLGLTGYYRRFVRNYGSMATPLTQLLKKGVYEWTAAAHEVFEKLKVAMMTLPI 744

Query: 64   LGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFAI 123
            L LP+F   FEIE+DASG G G        P+AYFSQ L    R K+VYE ELMA++ A+
Sbjct: 745  LALPDFSLPFEIETDASGYGVGAVLIQNNRPIAYFSQTLAMRGRAKSVYERELMAVVLAV 804

Query: 124  QKWRSYLLERHFVVVEDL------------------------------------------ 183
            Q+WR YLL + FVV  D                                           
Sbjct: 805  QRWRPYLLGKRFVVKTDQQSLKFLLEQRVIQPQHQRWVAKLLGYNFDVVYKPGLENKAAD 864

Query: 184  VLSEIQQMLRAGQ---------SALRAEFH-----------------------CSPIGGH 243
             LS +       Q         S LR+E                          +  GGH
Sbjct: 865  ALSRVSPTAHLNQLTASSLLDVSILRSEVDGDEKLQEIVAKLEEGEDVAGFTMQNVFGGH 924

Query: 244  QGALKTYQRLARDVYWTDMKA--------------------------------------- 303
             G L+TY+RL  ++YW  MKA                                       
Sbjct: 925  SGYLRTYKRLIGELYWEGMKADDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFI 984

Query: 304  --------------------------KSIVSDRDKIFTSLFWEELFWPLGTQLCRSMAYH 310
                                      KSIVSDR+K+F S FW+E+FW   T+L RS AYH
Sbjct: 985  ALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHFWQEMFWLSDTKLSRSTAYH 1044

BLAST of Clc09G12310 vs. NCBI nr
Match: CAN66228.1 (hypothetical protein VITISV_012977 [Vitis vinifera])

HSP 1 Score: 186.0 bits (471), Expect = 5.3e-43
Identity = 157/537 (29.24%), Postives = 204/537 (37.99%), Query Frame = 0

Query: 3    KNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEIL 62
            K++KEL GFLGLT Y R+FV  YG+I+ PLTQ LKK+ F+W+ + + A ++LK+ M  IL
Sbjct: 710  KSLKELRGFLGLTGYNRRFVKGYGAISWPLTQQLKKDAFNWSPKAEAAFRKLKTAMTTIL 769

Query: 63   ILGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFA 122
            +L LPNF + F IE+DAS  G G        P+AYF+Q L +  R K +Y+ ELMAI  A
Sbjct: 770  VLALPNFSQPFIIETDASRYGLGAVLMQSHRPVAYFNQVLSARERQKFIYKRELMAIGLA 829

Query: 123  IQKWRSYLLERHFVV----------VEDLVLSEIQQ------------------------ 182
            IQKWR YLL RHF+V          +E  V++E+ Q                        
Sbjct: 830  IQKWRHYLLGRHFIVQTDQSSLKFLLEQRVVNELYQKWVAKLFGYDFEIQFPPELKNKAA 889

Query: 183  -----------------------------------------------------------M 242
                                                                       +
Sbjct: 890  DALSRIPISMDLATHMVPSRLDTSLINSQVEADPHLAKILQRLLVDLNAYPRYSLDHGVL 949

Query: 243  LRAGQ----------SALRAEFHCSPIGGHQGALKTYQRLARDVYWTDMKAKSIVSDRDK 302
            L  G+            L  E H S +GGH  A        +DV        SIVSDRDK
Sbjct: 950  LYKGRLVLPKASPLVPTLLQEGHASVVGGH-SAQTVVVVFVQDVVKLHGIPHSIVSDRDK 1009

Query: 303  IFTSLFWEELFWPLGTQLCRSMAYHPQTDGEAEVTAR----------------------- 310
            +F SLFW +LF  LGT LC S AYHPQTDG+ EV  R                       
Sbjct: 1010 VFLSLFWTKLFRLLGTSLCHSTAYHPQTDGQTEVVNRCVETYLRCFSYNKPRRWSTWLPW 1069

BLAST of Clc09G12310 vs. NCBI nr
Match: OAO89457.1 (hypothetical protein AXX17_ATUG00140 [Arabidopsis thaliana])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-41
Identity = 113/308 (36.69%), Postives = 147/308 (47.73%), Query Frame = 0

Query: 1   MTKNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVE 60
           + K++ EL GFLG T YYR+FV NYG IA PLT  L+K  F WN     A Q LK  +  
Sbjct: 685 LPKSVTELRGFLGFTGYYRRFVKNYGQIARPLTDQLRKSGFEWNESATMAFQELKRAVTN 744

Query: 61  ILILGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAIL 120
           +L+L LP+F++ F +++DASGVG G        P+AY SQA  S  R K+VYE EL+AI+
Sbjct: 745 LLVLVLPDFQQEFTVKTDASGVGIGAVLSQNKRPIAYLSQAFSSQGRIKSVYERELLAIV 804

Query: 121 FAIQKWRSYLLERHFVVVEDLVLSEIQQMLRAGQSALRAEFHCSPIGGHQGALKTYQRLA 180
            A+ KW+ YL  R FV+  D             Q +LR     + +GGH+GALKT++RL 
Sbjct: 805 RAVTKWKHYLSSREFVIKTD-------------QRSLRHLLEQNAMGGHEGALKTFKRLC 864

Query: 181 RDVYWTDMK--------------------------------AKSIVSD------------ 232
            +VYW  M+                                ++ I SD            
Sbjct: 865 NEVYWRGMRRDTVNYIKGCQICQENKYSTLSPAGLLSPLSLSQQIWSDISLDFVEGLPTS 924

BLAST of Clc09G12310 vs. NCBI nr
Match: KAF8393178.1 (hypothetical protein HHK36_021419 [Tetracentron sinense])

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-41
Identity = 126/398 (31.66%), Postives = 164/398 (41.21%), Query Frame = 0

Query: 4   NIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILI 63
           N++ L GFLGLT YYRKFVA Y  IALPLT+ LKK+KF WN E + + + LK  M  +L+
Sbjct: 563 NLRALRGFLGLTGYYRKFVAGYAQIALPLTEQLKKDKFGWNSEAETSFEELKRAMTSVLV 622

Query: 64  LGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFAI 123
           L +P+F ++F IE+DASG G G        P+A+FSQAL    R K++YE ELMAI+FA+
Sbjct: 623 LAMPDFTQSFIIETDASGFGLGAVLSQGQQPVAFFSQALGPHARLKSIYEKELMAIVFAV 682

Query: 124 QKWRSYLLERHFVVVED-----------LVLSEIQQML------------RAGQ------ 183
            KWR YLL R F+V  D           +V +E Q+ +            R+G       
Sbjct: 683 MKWRPYLLGRRFIVRTDQQSLKFLLEQQIVGAEYQKWITKLMGYDFDIQYRSGASNRVAD 742

Query: 184 ----------------------------------------SALRAEFHCSPIGGHQGALK 232
                                                   S L  EFH SPIGGH G  K
Sbjct: 743 ALSRMPDQAECTQPHIGFTVEQGVLYYKNRLVLPRSSKLISTLIGEFHTSPIGGHSGETK 802

BLAST of Clc09G12310 vs. NCBI nr
Match: KYP46337.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cajanus cajan])

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-40
Identity = 111/324 (34.26%), Postives = 153/324 (47.22%), Query Frame = 0

Query: 4   NIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILI 63
           N++ + GFLGLT YYRKF+ +YG +A  LT L KK+ F WN +   A + LK  +  + I
Sbjct: 45  NMRGVSGFLGLTGYYRKFIRDYGKVARSLTDLTKKDGFGWNEQAQRAFEELKKKVTTVPI 104

Query: 64  LGLPNFKETFEIESDASGVGTG-----KCCPLAYFSQALLSTHRYKAVYEWELMAILFAI 123
           L LPNF++ FE+E DASG+G G     +  P+AYFS+AL   +  K+ YE ELMA+  AI
Sbjct: 105 LVLPNFEKEFELECDASGMGIGAILMQERIPVAYFSKALEEKNLAKSAYEKELMAVALAI 164

Query: 124 QKWRSYLLERHFVVVED-------LVLSEIQQ--------------MLRAGQSALR---- 183
           Q WR YLL R F V  D        V+ +++               +L  G+  +     
Sbjct: 165 QHWRPYLLGRKFKVYSDQKNDKWKKVIDDLKHGRETYPDFTYDHGVLLFKGRVVISRKSV 224

Query: 184 ------AEFHCSPIGGHQGALKTYQRLARDVYWTDMK----------------------- 232
                  EFH +P+GGH G  +TY+R+A ++YW  MK                       
Sbjct: 225 WIPQMLKEFHETPVGGHSGFYRTYRRMATNLYWQGMKEDICKFVQGCDVCQRQKYLTTAP 284

BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-18
Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 0

Query: 6   KELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEK--FSWNVEVDEACQRLKSMMVEILI 65
           KE+  FLGLT YYRKF+ N+  IA P+T+ LKK     + N E D A ++LK ++ E  I
Sbjct: 440 KEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPI 499

Query: 66  LGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFAI 125
           L +P+F + F + +DAS V  G        PL+Y S+ L       +  E EL+AI++A 
Sbjct: 500 LKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWAT 559

Query: 126 QKWRSYLLERHFVVVED 136
           + +R YLL RHF +  D
Sbjct: 560 KTFRHYLLGRHFEISSD 576

BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-17
Identity = 52/137 (37.96%), Postives = 81/137 (59.12%), Query Frame = 0

Query: 6   KELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEK--FSWNVEVDEACQRLKSMMVEILI 65
           KE+  FLGLT YYRKF+ NY  IA P+T  LKK     +  +E  EA ++LK++++   I
Sbjct: 439 KEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPI 498

Query: 66  LGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFAI 125
           L LP+F++ F + +DAS +  G        P+++ S+ L       +  E EL+AI++A 
Sbjct: 499 LQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWAT 558

Query: 126 QKWRSYLLERHFVVVED 136
           + +R YLL R F++  D
Sbjct: 559 KTFRHYLLGRQFLIASD 575

BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-12
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 0

Query: 4   NIKELCGFLGLTEYYRKFVANYGSIALPLTQLLK--------KEKFSWNVEVDEACQR-- 63
           ++KEL  FLG+T YYRKF+ +Y  +A PLT L +         +     + +DE   +  
Sbjct: 354 SVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSF 413

Query: 64  --LKSMMVEILILGLPNFKETFEIESDAS--GVGT-------GKCCPLAYFSQALLSTHR 123
             LKS++    IL  P F + F + +DAS   +G        G+  P+AY S++L  T  
Sbjct: 414 NDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEE 473

Query: 124 YKAVYEWELMAILFAIQKWRSYL 126
             A  E E++AI++++   R+YL
Sbjct: 474 NYATIEKEMLAIIWSLDNLRAYL 496

BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 0

Query: 11  FLGLTEYYRKFVANYGSIALPLTQLLKKE-KFSWNVEVDEACQRLKSMMVEILILGLPNF 70
           F+    YYR+F+ N+   +  +T+L KK   F W  E  +A   LKS ++   +L  P+F
Sbjct: 553 FVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDF 612

Query: 71  KETFEIESDASGVGTGKC---------CPLAYFSQALLSTHRYKAVYEWELMAILFAIQK 130
            + F I +DAS    G            P+AY S+A       K+  E EL AI +AI  
Sbjct: 613 SKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIH 672

Query: 131 WRSYLLERHFVVVED 136
           +R Y+  +HF V  D
Sbjct: 673 FRPYIYGKHFTVKTD 687

BLAST of Clc09G12310 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-11
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 3   KNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEIL 62
           KN  EL GFLGLT YYR+FV NYG I  PLT+LLKK    W      A + LK  +  + 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 63  ILGLPNFKETF 74
           +L LP+ K  F
Sbjct: 121 VLALPDLKLPF 131

BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A5A7SPQ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00710 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48
Identity = 164/546 (30.04%), Postives = 210/546 (38.46%), Query Frame = 0

Query: 4    NIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILI 63
            N++E+ GFLGLT YYR+FV NYGS+A PLTQLLKK  + W     E  ++LK  M+ + I
Sbjct: 685  NVREVRGFLGLTGYYRRFVRNYGSMATPLTQLLKKGVYEWTAAAHEVFEKLKVAMMTLPI 744

Query: 64   LGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFAI 123
            L LP+F   FEIE+DASG G G        P+AYFSQ L    R K+VYE ELMA++ A+
Sbjct: 745  LALPDFSLPFEIETDASGYGVGAVLIQNNRPIAYFSQTLAMRGRAKSVYERELMAVVLAV 804

Query: 124  QKWRSYLLERHFVVVEDL------------------------------------------ 183
            Q+WR YLL + FVV  D                                           
Sbjct: 805  QRWRPYLLGKRFVVKTDQQSLKFLLEQRVIQPQHQRWVAKLLGYNFDVVYKPGLENKAAD 864

Query: 184  VLSEIQQMLRAGQ---------SALRAEFH-----------------------CSPIGGH 243
             LS +       Q         S LR+E                          +  GGH
Sbjct: 865  ALSRVSPTAHLNQLTASSLLDVSILRSEVDGDEKLQEIVAKLEEGEDVAGFTMQNVFGGH 924

Query: 244  QGALKTYQRLARDVYWTDMKA--------------------------------------- 303
             G L+TY+RL  ++YW  MKA                                       
Sbjct: 925  SGYLRTYKRLIGELYWEGMKADDTIWSEISMDFIDGLPKSEGHEVILVVVDRLSKYGHFI 984

Query: 304  --------------------------KSIVSDRDKIFTSLFWEELFWPLGTQLCRSMAYH 310
                                      KSIVSDR+K+F S FW+E+FW   T+L RS AYH
Sbjct: 985  ALKHPYTAKTVADAFVKEVVKLHGYPKSIVSDRNKVFLSHFWQEMFWLSDTKLSRSTAYH 1044

BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A5C0Y9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012977 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-43
Identity = 157/537 (29.24%), Postives = 204/537 (37.99%), Query Frame = 0

Query: 3    KNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEIL 62
            K++KEL GFLGLT Y R+FV  YG+I+ PLTQ LKK+ F+W+ + + A ++LK+ M  IL
Sbjct: 710  KSLKELRGFLGLTGYNRRFVKGYGAISWPLTQQLKKDAFNWSPKAEAAFRKLKTAMTTIL 769

Query: 63   ILGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFA 122
            +L LPNF + F IE+DAS  G G        P+AYF+Q L +  R K +Y+ ELMAI  A
Sbjct: 770  VLALPNFSQPFIIETDASRYGLGAVLMQSHRPVAYFNQVLSARERQKFIYKRELMAIGLA 829

Query: 123  IQKWRSYLLERHFVV----------VEDLVLSEIQQ------------------------ 182
            IQKWR YLL RHF+V          +E  V++E+ Q                        
Sbjct: 830  IQKWRHYLLGRHFIVQTDQSSLKFLLEQRVVNELYQKWVAKLFGYDFEIQFPPELKNKAA 889

Query: 183  -----------------------------------------------------------M 242
                                                                       +
Sbjct: 890  DALSRIPISMDLATHMVPSRLDTSLINSQVEADPHLAKILQRLLVDLNAYPRYSLDHGVL 949

Query: 243  LRAGQ----------SALRAEFHCSPIGGHQGALKTYQRLARDVYWTDMKAKSIVSDRDK 302
            L  G+            L  E H S +GGH  A        +DV        SIVSDRDK
Sbjct: 950  LYKGRLVLPKASPLVPTLLQEGHASVVGGH-SAQTVVVVFVQDVVKLHGIPHSIVSDRDK 1009

Query: 303  IFTSLFWEELFWPLGTQLCRSMAYHPQTDGEAEVTAR----------------------- 310
            +F SLFW +LF  LGT LC S AYHPQTDG+ EV  R                       
Sbjct: 1010 VFLSLFWTKLFRLLGTSLCHSTAYHPQTDGQTEVVNRCVETYLRCFSYNKPRRWSTWLPW 1069

BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A178U8F9 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG00140 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.3e-42
Identity = 113/308 (36.69%), Postives = 147/308 (47.73%), Query Frame = 0

Query: 1   MTKNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVE 60
           + K++ EL GFLG T YYR+FV NYG IA PLT  L+K  F WN     A Q LK  +  
Sbjct: 685 LPKSVTELRGFLGFTGYYRRFVKNYGQIARPLTDQLRKSGFEWNESATMAFQELKRAVTN 744

Query: 61  ILILGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAIL 120
           +L+L LP+F++ F +++DASGVG G        P+AY SQA  S  R K+VYE EL+AI+
Sbjct: 745 LLVLVLPDFQQEFTVKTDASGVGIGAVLSQNKRPIAYLSQAFSSQGRIKSVYERELLAIV 804

Query: 121 FAIQKWRSYLLERHFVVVEDLVLSEIQQMLRAGQSALRAEFHCSPIGGHQGALKTYQRLA 180
            A+ KW+ YL  R FV+  D             Q +LR     + +GGH+GALKT++RL 
Sbjct: 805 RAVTKWKHYLSSREFVIKTD-------------QRSLRHLLEQNAMGGHEGALKTFKRLC 864

Query: 181 RDVYWTDMK--------------------------------AKSIVSD------------ 232
            +VYW  M+                                ++ I SD            
Sbjct: 865 NEVYWRGMRRDTVNYIKGCQICQENKYSTLSPAGLLSPLSLSQQIWSDISLDFVEGLPTS 924

BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A151RUW5 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan OX=3821 GN=KK1_032059 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.0e-41
Identity = 111/324 (34.26%), Postives = 153/324 (47.22%), Query Frame = 0

Query: 4   NIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEILI 63
           N++ + GFLGLT YYRKF+ +YG +A  LT L KK+ F WN +   A + LK  +  + I
Sbjct: 45  NMRGVSGFLGLTGYYRKFIRDYGKVARSLTDLTKKDGFGWNEQAQRAFEELKKKVTTVPI 104

Query: 64  LGLPNFKETFEIESDASGVGTG-----KCCPLAYFSQALLSTHRYKAVYEWELMAILFAI 123
           L LPNF++ FE+E DASG+G G     +  P+AYFS+AL   +  K+ YE ELMA+  AI
Sbjct: 105 LVLPNFEKEFELECDASGMGIGAILMQERIPVAYFSKALEEKNLAKSAYEKELMAVALAI 164

Query: 124 QKWRSYLLERHFVVVED-------LVLSEIQQ--------------MLRAGQSALR---- 183
           Q WR YLL R F V  D        V+ +++               +L  G+  +     
Sbjct: 165 QHWRPYLLGRKFKVYSDQKNDKWKKVIDDLKHGRETYPDFTYDHGVLLFKGRVVISRKSV 224

Query: 184 ------AEFHCSPIGGHQGALKTYQRLARDVYWTDMK----------------------- 232
                  EFH +P+GGH G  +TY+R+A ++YW  MK                       
Sbjct: 225 WIPQMLKEFHETPVGGHSGFYRTYRRMATNLYWQGMKEDICKFVQGCDVCQRQKYLTTAP 284

BLAST of Clc09G12310 vs. ExPASy TrEMBL
Match: A0A5A7SNK3 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00210 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40
Identity = 168/627 (26.79%), Postives = 209/627 (33.33%), Query Frame = 0

Query: 3   KNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEIL 62
           KN++EL GFLGLT YYR+FVANYG+IA PLT+L KK  F W+ E   A + LK  MV + 
Sbjct: 355 KNVRELRGFLGLTGYYRRFVANYGAIATPLTRLTKKNNFHWSAEATVAFETLKKAMVILP 414

Query: 63  ILGLPNFKETFEIESDASGVGTGKCC-----PLAYFSQALLSTHRYKAVYEWELMAILFA 122
           +L LP+F++ FEIE+DASG G G        P+AYFSQ L  T R K+VYE ELMAI+ A
Sbjct: 415 VLALPDFQQPFEIETDASGFGLGAVLSQNKRPIAYFSQKLSETAREKSVYERELMAIVLA 474

Query: 123 IQKWRSYLLERHFV---------------------------------------------- 182
           + KWR YLL   FV                                              
Sbjct: 475 VDKWRHYLLGHRFVLMGFDFEIFYQAGPKNKAADALSCIPIETQLNVIAVPSILDVAVVE 534

Query: 183 --VVEDLVLSEIQQML------------RAGQSALRAE----------------FHCSPI 242
             V ED  L +I + L            R G+   +                  FH S I
Sbjct: 535 KEVQEDAKLRDIFEKLSVDLGCVPRYSVRQGRLFYKGRLVLSKTSSLLPTILHTFHDSVI 594

Query: 243 GGHQGALKTYQRLARDVYWTDMK------------------------------------- 302
           GGH G L+TY+R+A ++YW  MK                                     
Sbjct: 595 GGHSGQLRTYKRIAAELYWEGMKNDIKLYVDQCHVCQQNKIQALSPAGLFQPLPIPNRIW 654

Query: 303 -----------------------------------------------------------A 310
                                                                       
Sbjct: 655 EDISMDFVEGLPRSRKFDSLFVVVDCLSKYAHFIALSHPFSTKTVAMEFIKEIVRLHGYH 714

BLAST of Clc09G12310 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-12
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 3   KNIKELCGFLGLTEYYRKFVANYGSIALPLTQLLKKEKFSWNVEVDEACQRLKSMMVEIL 62
           KN  EL GFLGLT YYR+FV NYG I  PLT+LLKK    W      A + LK  +  + 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 63  ILGLPNFKETF 74
           +L LP+ K  F
Sbjct: 121 VLALPDLKLPF 131

BLAST of Clc09G12310 vs. TAIR 10
Match: AT5G44200.1 (CAP-binding protein 20 )

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-09
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 310 WG-QDGRQWGRGRSGGQVRDEYRTDYDP 337
           WG Q+GRQWGRGRSGGQVRDEYRTDYDP
Sbjct: 111 WGFQEGRQWGRGRSGGQVRDEYRTDYDP 138

BLAST of Clc09G12310 vs. TAIR 10
Match: AT5G44200.2 (CAP-binding protein 20 )

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-09
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 310 WG-QDGRQWGRGRSGGQVRDEYRTDYDP 337
           WG Q+GRQWGRGRSGGQVRDEYRTDYDP
Sbjct: 111 WGFQEGRQWGRGRSGGQVRDEYRTDYDP 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031986.11.6e-4730.04Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Tran... [more]
CAN66228.15.3e-4329.24hypothetical protein VITISV_012977 [Vitis vinifera][more]
OAO89457.11.3e-4136.69hypothetical protein AXX17_ATUG00140 [Arabidopsis thaliana][more]
KAF8393178.13.8e-4131.66hypothetical protein HHK36_021419 [Tetracentron sinense][more]
KYP46337.11.4e-4034.26Retrovirus-related Pol polyprotein from transposon 297 family [Cajanus cajan][more]
Match NameE-valueIdentityDescription
P043234.7e-1840.88Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208252.3e-1737.96Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q8I7P93.8e-1232.87Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P103941.5e-1133.33Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
P925232.5e-1149.30Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7SPQ87.7e-4830.04Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A5C0Y92.6e-4329.24Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012977 PE=4 SV=1[more]
A0A178U8F96.3e-4236.69Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG00140 PE=4 ... [more]
A0A151RUW57.0e-4134.26Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan O... [more]
A0A5A7SNK32.0e-4026.79Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
ATMG00860.11.8e-1249.30DNA/RNA polymerases superfamily protein [more]
AT5G44200.16.9e-0992.86CAP-binding protein 20 [more]
AT5G44200.26.9e-0992.86CAP-binding protein 20 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 154..185
e-value: 3.9E-6
score: 26.8
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 43..132
e-value: 2.8E-16
score: 59.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 163..249
e-value: 7.0E-8
score: 34.3
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..76
e-value: 5.9E-17
score: 63.5
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 4..133
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 4..133
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..137
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 167..241

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G12310.1Clc09G12310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding