Clc09G11520 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G11520
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 10209197 .. 10210707 (+)
RNA-Seq Expression	Clc09G11520
Synteny	Clc09G11520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATGGTAATGGTCAAACCATCTCCACCACAGAGTCATACCAACCTCTCTTTTTGCTGGAAGAAATGCGAACGTAAAACCGCATTGAACACAACCAAAATTTCAAGGCATTTACTCAGAATCAAACACTTCATTGATAATAAGTTCCCATCATCACACACCAACGTACAATCCATTTGATAAAAAAGAGAAAACAGAACTACAAAAACTCAACTCTCTTTCAACACTTCAAGAACATTAAGAAGCAAACAGAAAGTCGCTCAAAACCCATGAATCTTGATCTGATCCTTCTTGACCAGACCAGCATGAACAAGAAACTGAGAGACGTTCTTACGCTGATCGCCTTGAAGTTGAATTATCTTCCCCAATTCTTTGTCTTGCACAACGTTACCATTACAGCAGAATTCCTTCTTCACGTCTTTGAGAATCTTCTCGTAGCTAAACTCTTTCTTCAGACCTTGGACTGTAGTCAAGCACTTCTTCCCATTCCTTTGTTGGACGCGAATATGAACATACTCTTTGGTTCCGGGGGCATCCGAATCCTTGGCTTCGGCGAATGGATCAAATGCGGATGGGATCTGGTAGTCTAATTCAACCATGAACCTTATTTGGATGAAAGCTCAAACGAAACCGGACAGCTGAAAATCTGGAAACAGAGAAACAATTATGAGCTAAACCTGGCCCTTCACAATCCTCAGCTCTTAAGGTACCAAAAACACTAAGATTTAGAACCGAAAACTAAGGCCCTCCTTGAATCCGTTTGTTCCATATTCAATTCTCTGCTTTTGAAATTTGTGCTCCTTTACTCCCAATTTTTAAATTATAGTTTGCACAAAACATTTATTAAATTCTAAAAAAACCTCAACTTCATCTTTTTGGAACATCAATAGAAGGTTAATAAACCATAAGGATGAAAAGCCTTCGTTGGATCCGTTCGTTCCTTACTCAATTTTCCGTTTTTGTTATTCATTCTCGTTGTCACAATTTTTCAGTTATAGTTCTGCCCAAAACCCTTGAATTTCTTATCAAATTCTAGAAATTCTAAAAAAAGTTCGGCCCTATGAAGCTTCAGTAGAGGGTGGTTAACCAAACACAGAGACCCATGGATTACACTTAAAAATTTATGCTTCGTTTTCACTTAAATTTTCGACTACGATTTTCCCACAACACCTGGATTCCGAATCAAATTCTAAAAACAATTTTTTTTATAGTTCCATTCTTTGCTTCTAAATTTAAAGAGAGAACATTTAAGACTTATAGATGGATTTTTTAAATTTATGCCATCCACCAAAATTTTCAATTATGGTCATCTTCTCTAAACACTAGAATTCTTCACCAAATTCTAGAAACAAATGATTTCTGTGAGAAGTTCACAACACTTGACTAGATTTTTGAAACATCAATAGAAAGTGGATAACAAAATAGCAAACTCCAGCAACCAAATGGTACCCAGACCGAACCTACACGGAACCAAAAGTCCCGAACAATTCCAATTTAGGAAAAGAAAAAAA

mRNA sequence

CGAATGGTAATGGTCAAACCATCTCCACCACAGAGTCATACCAACCTCTCTTTTTGCTGGAAGAAATGCGAACGTAAAACCGCATTGAACACAACCAAAATTTCAAGGCATTTACTCAGAATCAAACACTTCATTGATAATAAGTTCCCATCATCACACACCAACGTACAATCCATTTGATAAAAAAGAGAAAACAGAACTACAAAAACTCAACTCTCTTTCAACACTTCAAGAACATTAAGAAGCAAACAGAAAGTCGCTCAAAACCCATGAATCTTGATCTGATCCTTCTTGACCAGACCAGCATGAACAAGAAACTGAGAGACGTTCTTACGCTGATCGCCTTGAAGTTGAATTATCTTCCCCAATTCTTTGTCTTGCACAACGTTACCATTACAGCAGAATTCCTTCTTCACGTCTTTGAGAATCTTCTCGTAGCTAAACTCTTTCTTCAGACCTTGGACTGTAGTCAAGCACTTCTTCCCATTCCTTTGTTGGACGCGAATATGAACATACTCTTTGGTTCCGGGGGCATCCGAATCCTTGGCTTCGGCGAATGGATCAAATGCGGATGGGATCTGGTAGTCTAATTCAACCATGAACCTTATTTGGATGAAAGCTCAAACGAAACCGGACAGCTGAAAATCTGGAAACAGAGAAACAATTATGAGCTAAACCTGGCCCTTCACAATCCTCAGCTCTTAAGGTACCAAAAACACTAAGATTTAGAACCGAAAACTAAGGCCCTCCTTGAATCCGTTTGTTCCATATTCAATTCTCTGCTTTTGAAATTTGTGCTCCTTTACTCCCAATTTTTAAATTATAGTTTGCACAAAACATTTATTAAATTCTAAAAAAACCTCAACTTCATCTTTTTGGAACATCAATAGAAGGTTAATAAACCATAAGGATGAAAAGCCTTCGTTGGATCCGTTCGTTCCTTACTCAATTTTCCGTTTTTGTTATTCATTCTCGTTGTCACAATTTTTCAGTTATAGTTCTGCCCAAAACCCTTGAATTTCTTATCAAATTCTAGAAATTCTAAAAAAAGTTCGGCCCTATGAAGCTTCAGTAGAGGGTGGTTAACCAAACACAGAGACCCATGGATTACACTTAAAAATTTATGCTTCGTTTTCACTTAAATTTTCGACTACGATTTTCCCACAACACCTGGATTCCGAATCAAATTCTAAAAACAATTTTTTTTATAGTTCCATTCTTTGCTTCTAAATTTAAAGAGAGAACATTTAAGACTTATAGATGGATTTTTTAAATTTATGCCATCCACCAAAATTTTCAATTATGGTCATCTTCTCTAAACACTAGAATTCTTCACCAAATTCTAGAAACAAATGATTTCTGTGAGAAGTTCACAACACTTGACTAGATTTTTGAAACATCAATAGAAAGTGGATAACAAAATAGCAAACTCCAGCAACCAAATGGTACCCAGACCGAACCTACACGGAACCAAAAGTCCCGAACAATTCCAATTTAGGAAAAGAAAAAAA

Coding sequence (CDS)

ATGAATCTTGATCTGATCCTTCTTGACCAGACCAGCATGAACAAGAAACTGAGAGACGTTCTTACGCTGATCGCCTTGAAGTTGAATTATCTTCCCCAATTCTTTGTCTTGCACAACGTTACCATTACAGCAGAATTCCTTCTTCACGTCTTTGAGAATCTTCTCGTAGCTAAACTCTTTCTTCAGACCTTGGACTGTAGTCAAGCACTTCTTCCCATTCCTTTGTTGGACGCGAATATGAACATACTCTTTGGTTCCGGGGGCATCCGAATCCTTGGCTTCGGCGAATGGATCAAATGCGGATGGGATCTGGTAGTCTAA

Protein sequence

MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLFLQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDLVV

Homology

[Close]

BLAST of Clc09G11520 vs. NCBI nr
Match: AFK40627.1 (unknown [Lotus japonicus])

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-23
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNL+L   D+ S+N+KLR +L LI L+LNYLPQ  +LHN+ + A+ LL + E+LLVA+L 
Sbjct: 1   MNLNLFFPDKASLNQKLRHLLALITLELNYLPQLLILHNIPVAAKLLLKILEDLLVAELL 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDL 105
           LQ L C QA L IPLL+A M+IL GSGGIR     +WIK GWDL
Sbjct: 61  LQPLHCGQAFLSIPLLNAYMHILLGSGGIRFFSLSKWIKRGWDL 104

[Close]

BLAST of Clc09G11520 vs. NCBI nr
Match: AFK42504.1 (unknown [Lotus japonicus])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 9   DQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLFLQTLDCSQ 68
           D+ S+N+KLR +L LI L+LNYLPQ  +LHN+ + A+ L  + E+LLVA+L LQ L C Q
Sbjct: 5   DKASLNQKLRHLLALITLELNYLPQLLILHNIPVAAKLLPKILEDLLVAELLLQPLHCGQ 64

Query: 69  ALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDL 105
           A L IPLL+A M+I  GSGGIR     +WIK GWDL
Sbjct: 65  AFLSIPLLNAYMHIPLGSGGIRFFSLSKWIKRGWDL 100

[Close]

BLAST of Clc09G11520 vs. NCBI nr
Match: ACU23029.1 (unknown [Glycine max])

HSP 1 Score: 104.0 bits (258), Expect = 8.2e-19
Identity = 57/104 (54.81%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNLDL+L D+ S+N+++ DVLTL+AL+L+ L +  VLH+ ++ AE LL V E+LLVA+L 
Sbjct: 1   MNLDLVLPDKASLNEEVGDVLTLVALELDDLAKLLVLHHGSVAAELLLEVLEDLLVAELL 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDL 105
           LQ L C Q LLPIPLL++NM+IL  SGGIR    G+ ++ G DL
Sbjct: 61  LQPLHCGQTLLPIPLLNSNMHILLCSGGIRFSRLGKRVEWGGDL 104

[Close]

BLAST of Clc09G11520 vs. NCBI nr
Match: ACU13196.1 (unknown [Glycine max])

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-17
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNLDL+L ++ SMN+++R+VL LI L+L+ L +  V+HN+ I AE  L VFE+LLVA+LF
Sbjct: 1   MNLDLVLPNKASMNEEVRNVLALITLELDNLAKLLVMHNIAIAAELFLEVFEDLLVAELF 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIK 100
           LQ L C Q LLPIPLL A+M+ILF  G I      +W++
Sbjct: 61  LQPLHCGQTLLPIPLLYADMHILFCPGSICFFCLRKWVE 99

[Close]

BLAST of Clc09G11520 vs. NCBI nr
Match: ACU14064.1 (unknown [Glycine max])

HSP 1 Score: 97.4 bits (241), Expect = 7.7e-17
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNLDL+L  + SMN+K+RDVL+LIAL+L+ L +  V+HN+ I A+  L VFE+LLVA+LF
Sbjct: 1   MNLDLVLPSKASMNEKVRDVLSLIALELDNLAKLLVMHNIAIAAQLFLEVFEDLLVAELF 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIK 100
           LQ L C + LLPIPLL A+MNI F    I      +W++
Sbjct: 61  LQPLHCGETLLPIPLLYADMNIFFRPWCICFFCLRKWVQ 99

[Close]

BLAST of Clc09G11520 vs. ExPASy TrEMBL
Match: I3SK35 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNL+L   D+ S+N+KLR +L LI L+LNYLPQ  +LHN+ + A+ LL + E+LLVA+L 
Sbjct: 1   MNLNLFFPDKASLNQKLRHLLALITLELNYLPQLLILHNIPVAAKLLLKILEDLLVAELL 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDL 105
           LQ L C QA L IPLL+A M+IL GSGGIR     +WIK GWDL
Sbjct: 61  LQPLHCGQAFLSIPLLNAYMHILLGSGGIRFFSLSKWIKRGWDL 104

[Close]

BLAST of Clc09G11520 vs. ExPASy TrEMBL
Match: I3SQG2 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 9   DQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLFLQTLDCSQ 68
           D+ S+N+KLR +L LI L+LNYLPQ  +LHN+ + A+ L  + E+LLVA+L LQ L C Q
Sbjct: 5   DKASLNQKLRHLLALITLELNYLPQLLILHNIPVAAKLLPKILEDLLVAELLLQPLHCGQ 64

Query: 69  ALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDL 105
           A L IPLL+A M+I  GSGGIR     +WIK GWDL
Sbjct: 65  AFLSIPLLNAYMHIPLGSGGIRFFSLSKWIKRGWDL 100

[Close]

BLAST of Clc09G11520 vs. ExPASy TrEMBL
Match: A0A0V0I3T3 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNLDLILLD TS +K++R++L LI LKL +  +F +LHN+ +  EF L +FE+  V + F
Sbjct: 1   MNLDLILLDNTSSHKEMRNILPLITLKLYHFAKFLILHNIPVATEFFLQIFEDFFVTEFF 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDLVV 107
            Q+L+C QA L IPLL  NMNIL GS    +L   +WI+  WDL V
Sbjct: 61  PQSLNCRQAFLSIPLLYTNMNILLGSRCTGVLSLSKWIESRWDLDV 106

[Close]

BLAST of Clc09G11520 vs. ExPASy TrEMBL
Match: C6TJD9 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 57/104 (54.81%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNLDL+L D+ S+N+++ DVLTL+AL+L+ L +  VLH+ ++ AE LL V E+LLVA+L 
Sbjct: 1   MNLDLVLPDKASLNEEVGDVLTLVALELDDLAKLLVLHHGSVAAELLLEVLEDLLVAELL 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIKCGWDL 105
           LQ L C Q LLPIPLL++NM+IL  SGGIR    G+ ++ G DL
Sbjct: 61  LQPLHCGQTLLPIPLLNSNMHILLCSGGIRFSRLGKRVEWGGDL 104

[Close]

BLAST of Clc09G11520 vs. ExPASy TrEMBL
Match: C6SVC3 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1   MNLDLILLDQTSMNKKLRDVLTLIALKLNYLPQFFVLHNVTITAEFLLHVFENLLVAKLF 60
           MNLDL+L ++ SMN+++R+VL LI L+L+ L +  V+HN+ I AE  L VFE+LLVA+LF
Sbjct: 1   MNLDLVLPNKASMNEEVRNVLALITLELDNLAKLLVMHNIAIAAELFLEVFEDLLVAELF 60

Query: 61  LQTLDCSQALLPIPLLDANMNILFGSGGIRILGFGEWIK 100
           LQ L C Q LLPIPLL A+M+ILF  G I      +W++
Sbjct: 61  LQPLHCGQTLLPIPLLYADMHILFCPGSICFFCLRKWVE 99

The following BLAST results are available for this feature:

BLAST of Clc09G11520 vs. NCBI nr


Match Name	E-value	Identity	Description
AFK40627.1	3.2e-23	57.69	unknown [Lotus japonicus]	[more]
AFK42504.1	2.5e-20	56.25	unknown [Lotus japonicus]	[more]
ACU23029.1	8.2e-19	54.81	unknown [Glycine max]	[more]
ACU13196.1	4.5e-17	53.54	unknown [Glycine max]	[more]
ACU14064.1	7.7e-17	53.54	unknown [Glycine max]	[more]

BLAST of Clc09G11520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G11520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
I3SK35	1.6e-23	57.69	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
I3SQG2	1.2e-20	56.25	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
A0A0V0I3T3	1.0e-19	50.94	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
C6TJD9	4.0e-19	54.81	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
C6SVC3	2.2e-17	53.54	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Clc09G11520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G11520.1	Clc09G11520.1	mRNA