Clc09G11240 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.atgggtagtcggaggaagaagaagcgtactgcggattcagaagagtcttcttcctcgtcaccgtcctcctccgatgattccgacagctcctctatgcggtcgcgccgccatcaccgcagtggcagttctagaagggagaaggacaaggaacgagagtcgaggattagagatagggagaggaagagaaaagataggaatagggagagagatagaaagaggagaaagaagaaattgagaagggagagcaagagaaagagggatgattatggatctgagagtgataacgagtcctcccattcaggggattctgttgatagcaagtctgatagacggaaggtgaagattattgagcctgaagtgattgtacgccagctgctgaaggaatttcctgatgttggaaatgacttaaaacaggttctttccttgaatttttgtggtatttgttggtttcagtttgttctgattatgtttctcatttgacattgttgtgcatacttgttgaatctttgaattctagttgggaagggttagcttcgttagagatggatggcttgttggcagggggtttgaaactgagaaatgcatactaatacaagagaaggggaaatgaggtatccccacaagaccagtgggttacaaaaagaactctcaattggcaaaactatgcataaacttctagtttaaagactccgcagagaaagaacagcaagttagtgaaaacttttccaaaagctctcaatgctcgacttgaaacttgtaggcaagggaggttgttgacgtggatcaagcgattcatctcttttgaaacagacttatttagagcaaacttcccttccttcaacctctccatcataggcgattttttctaatagacccctgatgggatggttgagatagtagcaaaactcttccaattttctagtcctctcaaaattttttcctcaacaggcttctagaaagcttgtttctctgaattagttcaaaagccattccatgtatggtaatttatcaaaggagcatctgaagcttctctggtattttcatgctttgttcgcctcctacatttatgctctataccagaataaattttgctggatgccaattccaaaatgtggaaacaggtcctctggttttctgagtaaagtgccatttacttgagcttattttcctttttattttcgatgtaatttaacaagtaaatttgagacatttaaatttttgttcacaagaaatctactgaagtgtcatttacatgagtttatctaactttttatttttaatgtgatttaacaagtaaatttgagatatttaaatttttgttcacaggaaatctactttgatcagatttcatctatgagagaaaagaaattcgacttatagacacagaaattcacctttttatccatgaattgttaagagccgttgtttgaatgtgattgtaatgttctggtctagctttaaatcttaggaaaacagcatttattgggataaatgttagagtaggaaaaacagaggagttggctgagttcttgggctgtaaaactgaagctttgccttttaattacttgggttttgctccccttgctgtttgggatcccatcaccgacaagtttaggtctaaattgagcaaatgaagaggccttctcttatctaaaggggtgagtttaactttggctcaaataatgttaaatatttcccttatactacttttcccttctcaaaggtaaggtggatgtgacaaaagagatggattgtttggagataaggattttttttatgggatggtggtgattttaaaagatgtacccacttgtaaattggaaagggacttccgtttctatttcaaaggtgaccttgggataggacccttcaagcaatctacaactgaatacttcttggtggtgttcctttttgatgtttatctacaattggaaaagtttcttgtaagtaggtttgcttgggaaaagtgtttttttttttttttggaacttgttatgcaaaaaagtcatctggtgtttgggaaccaaagatgtaaatgatcgtcacgtttatcggggataaaatcaagtattttgatgtgatgaattaaatattttctattgccaaatatttatttgattgtttgtttatcttacactcttgatacaacgtacaagcacatttttttttaattaccatgtgatacgtttgtggttgttatctgtttccttgatcttctttcataaagagcatcttctgactgagaatgattgatgatagacaagccttaggaaACTAGCATATAACTGCTGTTTATTTTACTACACAACACTCTTACATTGCATTTAATAATTGTTTTTAATTTCCTCATCTTTTTCTTATGAGATACTCCTTTCCTAATCTTATTCGTTAATAGCTTCTCAAGATGATTGATGATGGACAAGCTGTTGATATTTAG atgggtagtcggaggaagaagaagcgtactgcggattcagaagagtcttcttcctcgtcaccgtcctcctccgatgattccgacagctcctctatgcggtcgcgccgccatcaccgcagtggcagttctagaagggagaaggacaaggaacgagagtcgaggattagagatagggagaggaagagaaaagataggaatagggagagagatagaaagaggagaaagaagaaattgagaagggagagcaagagaaagagggatgattatggatctgagagtgataacgagtcctcccattcaggggattctgttgatagcaagtctgatagacggaaggtgaagattattgagcctgaagtgattgtacgccagctgctgaaggaatttcctgatgttggaaatgacttaaaacagCTTCTCAAGATGATTGATGATGGACAAGCTGTTGATATTTAG atgggtagtcggaggaagaagaagcgtactgcggattcagaagagtcttcttcctcgtcaccgtcctcctccgatgattccgacagctcctctatgcggtcgcgccgccatcaccgcagtggcagttctagaagggagaaggacaaggaacgagagtcgaggattagagatagggagaggaagagaaaagataggaatagggagagagatagaaagaggagaaagaagaaattgagaagggagagcaagagaaagagggatgattatggatctgagagtgataacgagtcctcccattcaggggattctgttgatagcaagtctgatagacggaaggtgaagattattgagcctgaagtgattgtacgccagctgctgaaggaatttcctgatgttggaaatgacttaaaacagCTTCTCAAGATGATTGATGATGGACAAGCTGTTGATATTTAG MGSRRKKKRTADSEESSSSSPSSSDDSDSSSMRSRRHHRSGSSRREKDKERESRIRDRERKRKDRNRERDRKRRKKKLRRESKRKRDDYGSESDNESSHSGDSVDSKSDRRKVKIIEPEVIVRQLLKEFPDVGNDLKQLLKMIDDGQAVDI Homology
BLAST of Clc09G11240 vs. NCBI nr
Match: XP_038898675.1 (DNA ligase 1 [Benincasa hispida]) HSP 1 Score: 233.8 bits (595), Expect = 9.8e-58 Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0
BLAST of Clc09G11240 vs. NCBI nr
Match: XP_004150393.1 (uncharacterized protein LOC101213388 [Cucumis sativus] >KGN44664.2 hypothetical protein Csa_016603 [Cucumis sativus]) HSP 1 Score: 221.5 bits (563), Expect = 5.0e-54 Identity = 138/151 (91.39%), Postives = 147/151 (97.35%), Query Frame = 0
BLAST of Clc09G11240 vs. NCBI nr
Match: XP_008461948.1 (PREDICTED: uncharacterized protein LOC103500427 [Cucumis melo]) HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51 Identity = 136/155 (87.74%), Postives = 146/155 (94.19%), Query Frame = 0
BLAST of Clc09G11240 vs. NCBI nr
Match: XP_022926268.1 (DNA ligase 1 [Cucurbita moschata]) HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45 Identity = 126/151 (83.44%), Postives = 138/151 (91.39%), Query Frame = 0
BLAST of Clc09G11240 vs. NCBI nr
Match: KAG6607621.1 (hypothetical protein SDJN03_00963, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45 Identity = 126/151 (83.44%), Postives = 138/151 (91.39%), Query Frame = 0
BLAST of Clc09G11240 vs. ExPASy TrEMBL
Match: A0A0A0K7U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281360 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54 Identity = 138/151 (91.39%), Postives = 147/151 (97.35%), Query Frame = 0
BLAST of Clc09G11240 vs. ExPASy TrEMBL
Match: A0A1S3CFW3 (uncharacterized protein LOC103500427 OS=Cucumis melo OX=3656 GN=LOC103500427 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 5.1e-52 Identity = 136/155 (87.74%), Postives = 146/155 (94.19%), Query Frame = 0
BLAST of Clc09G11240 vs. ExPASy TrEMBL
Match: A0A6J1EHJ8 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433443 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 7.1e-46 Identity = 126/151 (83.44%), Postives = 138/151 (91.39%), Query Frame = 0
BLAST of Clc09G11240 vs. ExPASy TrEMBL
Match: A0A6J1IUN5 (uncharacterized protein LOC111480750 OS=Cucurbita maxima OX=3661 GN=LOC111480750 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 8.4e-39 Identity = 115/139 (82.73%), Postives = 126/139 (90.65%), Query Frame = 0
BLAST of Clc09G11240 vs. ExPASy TrEMBL
Match: A0A6J1DVD5 (uncharacterized protein LOC111023459 OS=Momordica charantia OX=3673 GN=LOC111023459 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29 Identity = 109/151 (72.19%), Postives = 119/151 (78.81%), Query Frame = 0
BLAST of Clc09G11240 vs. TAIR 10
Match: AT1G65280.1 (DNAJ heat shock N-terminal domain-containing protein ) HSP 1 Score: 58.9 bits (141), Expect = 4.0e-09 Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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