Clc09G10960 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G10960
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease P
Location	ClcChr09: 9709112 .. 9710353 (-)
RNA-Seq Expression	Clc09G10960
Synteny	Clc09G10960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTCTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTTGGGGAATGTGGTTTTGCTTCCTCACTTGGATCTTTTCAAGGTAGATAAAACTGCATCTTACAAATACTCTCGTCAACTTCCATTTGTGTTAAACATCATACATATTTATATAGCTTAATCTTTGTTCTTGCCTTCTTGGTGTTTATGTAGTTAAGTATGTAAATCCGATCACGAAGTTGTGTATTATTAGATCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGCGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTGGTAAGTTTGTTTTCTGGGATCATTGTTTATGTTGTTGTCTCTTACAATTTGGCTTATAGACAATTGTGCTTGAAGGTTGTAATCAGAAAGTGACATGACAAGTTTTGAAATTGTAAATAATTTGAAACCTTCTTCCTTGTTGCACTTATTTATTTTTTTGGATCTAGAAAAGAGGGGCTCTAGGAACCCTGATGAATTGATATCCTATGAGTTACTTTGACAATCAAATGTACTTGATGGTCATTTTCCAGATTTAGAAAAGAGGGAATCTAGTGACCATCATGGGTTGATATTGTGATCATGCCAATGTATCTAGTAAATGATTGAAAGGAAACGAATTTAAACCATGGTAACCATCATGGATTGACATTGTGTTCATGCCAATATATGTAGTAAAGGGCTTAAAGGAGACAAGTTTAAACCATGGTAACCACCTATCCAAAAATTGATATTATGAGTTATTTTGGTAACCAAATGTAGTAGATGATCAAGTGGTTGTCTTATAAGAATAGTCTATATATGCACAAATGGACCCAGAAATTCACTATTGTTTTTGTTTTTGTTTTTCCCATCATGCTCATACTGGCGCACTGATTTGATTTCTTCCTCGTATGAGTCACCAATGTAATTTAACAAATCACATTCACTTTCTTTTGTTTTTTTATAGGAAATACAAGGGCTTGCAAAAACACCGCCTTGAAGCTCGACAAATTGAAGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATGATGTGAATCTGCAAATGCATAACTGTCTCGAGAAGATTACAACTTTAGAAAACTGA

mRNA sequence

ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTCTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTTGGGGAATGTGGTTTTGCTTCCTCACTTGGATCTTTTCAAGTTAAGTATGTAAATCCGATCACGAAGTTGTGTATTATTAGATCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGCGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTGGAAATACAAGGGCTTGCAAAAACACCGCCTTGAAGCTCGACAAATTGAAGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATGATGTGAATCTGCAAATGCATAACTGTCTCGAGAAGATTACAACTTTAGAAAACTGA

Coding sequence (CDS)

ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTCTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTTGGGGAATGTGGTTTTGCTTCCTCACTTGGATCTTTTCAAGTTAAGTATGTAAATCCGATCACGAAGTTGTGTATTATTAGATCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGCGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTGGAAATACAAGGGCTTGCAAAAACACCGCCTTGAAGCTCGACAAATTGAAGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATGATGTGAATCTGCAAATGCATAACTGTCTCGAGAAGATTACAACTTTAGAAAACTGA

Protein sequence

MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

Homology

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BLAST of Clc09G10960 vs. NCBI nr
Match: XP_038899949.1 (probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM RTISNCPVVFNLLDLSGNTRACKNTAL+LDK
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALRLDK 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVGHRLPD+VNLQM NCLEKI TLE+
Sbjct: 121 LKFEQYKLMVGHRLPDNVNLQMQNCLEKIATLES 154

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BLAST of Clc09G10960 vs. NCBI nr
Match: XP_004139703.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >KGN44681.2 hypothetical protein Csa_016863 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 141/154 (91.56%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITK+CIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDLSGNTRACKNTAL+L+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVGH LPD+VNLQM NCLEKI TLEN
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

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BLAST of Clc09G10960 vs. NCBI nr
Match: KAA0061295.1 (putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa] >TYK09873.1 putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVGH LPD+V +QM NCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKMQMQNCLEKIANLEN 154

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BLAST of Clc09G10960 vs. NCBI nr
Match: XP_008461474.1 (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo] >XP_008461476.1 PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVGH LPD+V + M NCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

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BLAST of Clc09G10960 vs. NCBI nr
Match: XP_022972913.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 3.0e-70
Identity = 133/154 (86.36%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDL+GN+RACKNTAL++D+
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVG R+ D VNLQM NCLEKI TL+N
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLDN 154

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BLAST of Clc09G10960 vs. ExPASy Swiss-Prot
Match: Q6AWV1 (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702 GN=EMB1687 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 100/155 (64.52%), Postives = 122/155 (78.71%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLD 120
           VKYVNPITKLCI+RSSRE+++ VW AIT+ ++I NCPV+ NLLD+SG  RAC++TALK D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 KLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           K KFEQ        L ++   QM+  LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

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BLAST of Clc09G10960 vs. ExPASy Swiss-Prot
Match: Q9UU90 (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-13
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPII-----ITQYNVSKAIKDSILLNFGECGFASSL 60
           MVRFK+RY++ EVL    K+   D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTA 120
            S  VKY +P T   I+R SR+ ++  WAA+ + R +   PV+  ++ +SG  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LKLDKLKFEQYKLM 130
           ++ +K +     LM
Sbjct: 121 IERNKSEIHNISLM 133

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BLAST of Clc09G10960 vs. ExPASy Swiss-Prot
Match: Q54EP3 (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=44689 GN=pop5 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-11
Identity = 36/118 (30.51%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVR KNRY++ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKL 119
            YVNP T + IIR S E Y+++W A+T+  +    P+ F ++ + G+ R C+  A+K+
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

[Close]

BLAST of Clc09G10960 vs. ExPASy Swiss-Prot
Match: Q969H6 (Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 39/125 (31.20%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MVRFK+RY++ E++  DP   L  DD ++      S  ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VKYVNPITKLCIIRSSREDYQNVWAAITMARTISN----CPVVFNLLDLSGNTRACKNTA 120
           V+Y+N  T + ++R  +E YQ VW+A+     + N     P  FN L + G  R C+   
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFL 119

[Close]

BLAST of Clc09G10960 vs. ExPASy Swiss-Prot
Match: Q1JQ92 (Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MVRFK+RY++ EV+  DP   L  +D ++ T       ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VKYVNPITKLCIIRSSREDYQNVWAAITMARTISN----CPVVFNLLDLSGNTRACKNTA 120
           V+Y+N  T + ++R  +E Y+ VW+A+    ++ N     P   N L + G  R C+   
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFLNTLHVGGTIRTCQKFL 119

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BLAST of Clc09G10960 vs. ExPASy TrEMBL
Match: A0A5D3CDD4 (Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVGH LPD+V +QM NCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKMQMQNCLEKIANLEN 154

[Close]

BLAST of Clc09G10960 vs. ExPASy TrEMBL
Match: A0A1S3CEI9 (Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.9e-73
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVGH LPD+V + M NCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]

BLAST of Clc09G10960 vs. ExPASy TrEMBL
Match: A0A6J1IBH7 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 133/154 (86.36%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           KYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDL+GN+RACKNTAL++D+
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVG R+ D VNLQM NCLEKI TL+N
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLDN 154

[Close]

BLAST of Clc09G10960 vs. ExPASy TrEMBL
Match: A0A6J1EVL4 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 132/154 (85.71%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           +YVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFNLLDL+GN+RACKNTAL+LD+
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           LKFEQYKLMVG R+ D VNLQM NCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 154

[Close]

BLAST of Clc09G10960 vs. ExPASy TrEMBL
Match: A0A6J1CLH1 (Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.4e-67
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVR++NRY++LEV+LDP KD  TDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60

Query: 61  KYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLDK 120
           +YVNPITKLCIIR+S+EDYQ VWAAITM RTI NCPV+FNLLDL+GNTRACKNTAL+ ++
Sbjct: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120

Query: 121 LKFEQYKLMVGHRLPDDVNLQMHNCLEKITT 152
           LKFEQYKLMVG RL DDVNLQM NCLEKI T
Sbjct: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRT 151

[Close]

BLAST of Clc09G10960 vs. TAIR 10
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein )

HSP 1 Score: 197.2 bits (500), Expect = 9.6e-51
Identity = 100/155 (64.52%), Postives = 122/155 (78.71%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRACKNTALKLD 120
           VKYVNPITKLCI+RSSRE+++ VW AIT+ ++I NCPV+ NLLD+SG  RAC++TALK D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 KLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN 155
           K KFEQ        L ++   QM+  LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

The following BLAST results are available for this feature:

BLAST of Clc09G10960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899949.1	1.1e-77	95.45	probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]	[more]
XP_004139703.1	1.5e-74	91.56	probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093...	[more]
KAA0061295.1	3.8e-73	90.26	putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008461474.1	1.4e-72	89.61	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo] >XP_0...	[more]
XP_022972913.1	3.0e-70	86.36	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]	[more]

BLAST of Clc09G10960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWV1	1.4e-49	64.52	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702...	[more]
Q9UU90	2.0e-13	33.58	Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972...	[more]
Q54EP3	9.5e-11	30.51	Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=...	[more]
Q969H6	1.0e-09	31.20	Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=...	[more]
Q1JQ92	2.6e-08	29.60	Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1	[more]

BLAST of Clc09G10960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDD4	1.8e-73	90.26	Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 ...	[more]
A0A1S3CEI9	6.9e-73	89.61	Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1	[more]
A0A6J1IBH7	1.4e-70	86.36	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1	[more]
A0A6J1EVL4	4.2e-70	85.71	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1	[more]
A0A6J1CLH1	7.4e-67	82.12	Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1	[more]

BLAST of Clc09G10960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04635.1	9.6e-51	64.52	ribonuclease P family protein / Rpp14 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	GENE3D	3.30.70.3250	Ribonuclease P, Pop5 subunit	coord: 1..120 e-value: 3.3E-30 score: 106.5
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 1..119
IPR002759	RNase P subunit Pop5/Rpp14/Rnp2-like	PFAM	PF01900	RNase_P_Rpp14	coord: 7..115 e-value: 9.2E-26 score: 90.1
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 1..142
None	No IPR available	PANTHER	PTHR10993:SF12	RIBONUCLEASE P/MRP PROTEIN SUBUNIT POP5	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G10960.1	Clc09G10960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006364	rRNA processing
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0005655	nucleolar ribonuclease P complex
cellular_component	GO:0000172	ribonuclease MRP complex
cellular_component	GO:0030677	ribonuclease P complex
molecular_function	GO:0004526	ribonuclease P activity
molecular_function	GO:0033204	ribonuclease P RNA binding