Clc09G10720 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G10720
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 9499706 .. 9501277 (+)
RNA-Seq ExpressionClc09G10720
SyntenyClc09G10720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATAGCCTGGGTGTAAAGCTGGGAGAGAGAGTTGGCCGCACTGCAAAAAGAGGCGTACATGGTCCGATCTACCTCGTCGAGGCTGGTAGCGATAGATTTCCGCTTCTTGGCCATGGTGAAGGGATTAAACTTCTTCTCCGGTGAGTGAGAGGTCTGATTCCGGCGGGGTATGGGGGATTTTTGTTCTCACAGTGAAGATGAAGATTTTGGGAGAATTGGGATTTGGGAAAGGCCAAAGGGGGACTGGTGAGAGACTCGGAATGCTTGCATTCCTATAGAAGGAGTTGTCAGGTTGAGTGGAGGAAAAGGACTTATAGTAGCTATCGTGGCAATGCTCTACATATGATTATTTCTTTAATATGCTCTTTGTGTTGCCATGTAAATCATGTAACAAACCAATCTATCTATAATCTATATACATGGTTATTTCCAGAGGGAAAAAAATCTTAATACAAATTTTTACTTTTTCTCTTTTGTCTATATATTAAGTAAAAGTCTATTTTACCCTTCAATCTTTGAGACTTCATTCTTCGAGTTTAAGTATCCATTAAGAGTTGTTAGGAAAATAGAGGTGTAAGTTTATATTGATGGGACATGACTTTTTGGTTTCAAGTGAATACACATTGAATCGATGTAGTCATTCATATATTGATGTGATCTATGTAAAAGTCATGCAAAATACATACATGTAGTTATAGAAAAGTCATTGAAAGCACATACATGAACCAACTCTTATACTACTATAATTAATCAAGACAATTACGAATTCTAAAATTATGTATGGTGTCACAGTCATACTTCTTCAACCGTGCGGAACCATGATTCACGCTTAATCATGGTCAGCCTTAAGGGAAACGCAAGTCCCAATCTACATTTCGCTCATTCTTTTGAAGCTTCGTCAGACCTTAAGCGAGATTCTTTCGTCCTCAACCGAACTGAACTCATGCGGAACTAACTTCATCCGGCCTACACATCGCCTATACGTGTGACTTCCCTCCTTTCGTCATCATGATTCTCAACAACCCAACCCCCGTAATTCTATATCGCTTCGGAATCTTGCCGGGACGAGTTCAACCCCTTCATTGAGCCAAACAGGCTTATAATACTCTACTGGGACTTTCCGGGACATTATACTGCTTATCGAGACAACTCGGGCAAATACCGTATCAATGGGGACTATCGAGTTCCACATACGCTGTTGGATGTCATCCCGAGTGTCGAGACGATATTAGCTTTCTCTCTCTTGCTCCGGTTAGCTTATCAAGAACCATCGTGATCACCCCATGGGTATTTTTCTAACTCGAGACCTCCCGAACATCCATCCATTCGGACATTTCTAGGCATGAATCTTTTCGTGTACATGCTAGATCAATGCCGAGCCAAGATGGCATACCGGGTGCTATATCAAACCTCCAGTCCATGGGAAGGGGAGCAATGCCAGCACACCCATGTCGTCCGACACTGTCCATCGAGATCCCATTCCCAATGGAAGACGCCCAAGACACTCGTCTTGCAACGCTCGCCCACGCCCATGACACCATGCCTCCCCCTTATAGTACATTCTGA

mRNA sequence

ATGGTTCATAGCCTGGGTGTAAAGCTGGGAGAGAGAGTTGGCCGCACTGCAAAAAGAGGCGTACATGGTCCGATCTACCTCGTCGAGGCTGGTAGCGATAGATTTCCGCTTCTTGGCCATGGTGAAGGGATTAAACTTCTTCTCCGGCTTATAATACTCTACTGGGACTTTCCGGGACATTATACTGCTTATCGAGACAACTCGGGCAAATACCGTATCAATGGGGACTATCGAGTTCCACATACGCTGTTGGATGTCATCCCGAGTGTCGAGACGATATTAGCTTTCTCTCTCTTGCTCCGGCATGAATCTTTTCGTGTACATGCTAGATCAATGCCGAGCCAAGATGGCATACCGGGTGCTATATCAAACCTCCAGTCCATGGGAAGGGGAGCAATGCCAGCACACCCATGTCGTCCGACACTGTCCATCGAGATCCCATTCCCAATGGAAGACGCCCAAGACACTCGTCTTGCAACGCTCGCCCACGCCCATGACACCATGCCTCCCCCTTATAGTACATTCTGA

Coding sequence (CDS)

ATGGTTCATAGCCTGGGTGTAAAGCTGGGAGAGAGAGTTGGCCGCACTGCAAAAAGAGGCGTACATGGTCCGATCTACCTCGTCGAGGCTGGTAGCGATAGATTTCCGCTTCTTGGCCATGGTGAAGGGATTAAACTTCTTCTCCGGCTTATAATACTCTACTGGGACTTTCCGGGACATTATACTGCTTATCGAGACAACTCGGGCAAATACCGTATCAATGGGGACTATCGAGTTCCACATACGCTGTTGGATGTCATCCCGAGTGTCGAGACGATATTAGCTTTCTCTCTCTTGCTCCGGCATGAATCTTTTCGTGTACATGCTAGATCAATGCCGAGCCAAGATGGCATACCGGGTGCTATATCAAACCTCCAGTCCATGGGAAGGGGAGCAATGCCAGCACACCCATGTCGTCCGACACTGTCCATCGAGATCCCATTCCCAATGGAAGACGCCCAAGACACTCGTCTTGCAACGCTCGCCCACGCCCATGACACCATGCCTCCCCCTTATAGTACATTCTGA

Protein sequence

MVHSLGVKLGERVGRTAKRGVHGPIYLVEAGSDRFPLLGHGEGIKLLLRLIILYWDFPGHYTAYRDNSGKYRINGDYRVPHTLLDVIPSVETILAFSLLLRHESFRVHARSMPSQDGIPGAISNLQSMGRGAMPAHPCRPTLSIEIPFPMEDAQDTRLATLAHAHDTMPPPYSTF
Homology
[Close]
BLAST of Clc09G10720 vs. NCBI nr
Match: KAG6592203.1 (hypothetical protein SDJN03_14549, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MVHSLGVKLGERVGRTAKRGVHGPIYLVEAGSD 34
          +VHSLGVKL ERVG  AKRGVHGPIYLVEAGSD
Sbjct: 29 VVHSLGVKLRERVGPAAKRGVHGPIYLVEAGSD 61

[Close]
BLAST of Clc09G10720 vs. ExPASy TrEMBL
Match: A0A0A0K6C3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298760 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-16
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 1  MVHSLGVKLGERVGRTAKRGVHGPIYLVEAGSDRFPLLGHGEGIKLLLRLI 52
          +VHSLGVKLGERV RTAKRGVHGPIYLVEAG DRFPLLGH EGI LLLR +
Sbjct: 37 VVHSLGVKLGERVSRTAKRGVHGPIYLVEAGGDRFPLLGHDEGINLLLRRV 87

The following BLAST results are available for this feature:
BLAST of Clc09G10720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592203.17.7e-0687.88hypothetical protein SDJN03_14549, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc09G10720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G10720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6C36.8e-1686.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298760 PE=4 SV=1[more]
BLAST of Clc09G10720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G10720.1Clc09G10720.1mRNA