Clc09G09870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G09870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	S-protein homolog
Location	ClcChr09: 8480493 .. 8487407 (+)
RNA-Seq Expression	Clc09G09870
Synteny	Clc09G09870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCGATCAAGTTGAGGAAGGTGATAGTTTTGTGGCTCATCACAGCAGCTTTGGTCGAAGCTCGGGTTTTGAGGGTGACGTTACCTCCGCCGGCGGTTTCAAGGTATTATATTCACGTGGTAAACGGGCTAAGCAACGCCGATATGGTTGTGCACTGCCAATCGAAGGACGATGATTTGGGGTATCACCATTTAGTTAACCATGGAGATGATTACCAATGGAATTTTAAGGTTAACATTTTGGAAACAACTCTATTTTGGTGCAAATTGGAGAAGCCAAATGAGTATGTCTCTTTTGAAAGCTTTTGGCCTGAGTCTAGGAGCACTTGGCTCCGCGATAGGTGTGGCCCTCGAGGAACTTGTATTTGGACCGCTAAAGATGATGGAATTTACTTAAGAAATAATCCCGCTAATGTTGATGAGTTTGTTCACAAATGGATCCCTACTAGATAAATTAAACAAGCTTTATTAATTCATGGATGTGCAACAAATGAGAAATAATACACATGCACTCCAAGTTTGATTTAATAAAGAAACCAAAATCGTGTTGAGGTACTACTTATATTGACTTTTTTTCTCCCTCTTTTTGGTGTATGGAAATGTGCGTTTTTTTATAACTAATTTTAGTTTTTTTTTTTTTTTCCGAAGGTATTAGATTGTTTTCAAATATAGAAAAATAAACCAAAATATTTATAAATATAATAAAATTTTAGTGGCTATTGCAGTCTATTGTAGATAAACGGTGATATTTTGATATTATTTATAAATATTTTCAATAGTTTTGTCATTTAAAATAATTTCTCAAAGTATTATATGAATAATAAATTTTTAAATTTATAATTTAAAAATTAAAACGAGGAAACTAATGGCATCACTAAAAAATCACATCCAAATGTCTAAAAATATGATTTTTTTTCTTTACCGGAGTTTAGAGAATATTTCTTAAATAAGAGAACAAGAACATAGAAAATAAGTGTTGAATGCACGTGTTTCTCAAACTTTAGAAACAATAAACAAATACTACAAATTCAACTGGGGGGGACTGTGTAGGGCAACCTTGGTATAAATAACGAAAAAAATTGAGTGTAACTCAACTAGCAACTAATGTAATTGTGGTACTTGGTACAATTTTTTTTTTATTAATTATTATTATTACTTTTTTGTGAGTAAAAGAATGTTGCACCTAATCATTTTCTTAAATATAATTAGAAAAAAAAAGTTGAGTAGAGTTTGGGTTGCACCTATCTATTGTGCAATCTAGACAACATCCAATAAAAAAATTGTCATGTAGTAAAAAGAATTTTAATTGAATTATTTTTATATTTTTCAAATATGTATAGAATGGGATGCATAGAATTAGTTGCAACCTAGATTGCACTAAATCATTGTCCATATAATATTGTTTTAAACTTCTTGATGAACAAGTTCTTTTGAATACTTTAAATCCCTTGTTACACACTCTTTAAACTCCTACGTAACTTAAGAATTAGAATCATTGTTGCAAGCACTACATCGATGTACGTGTACAACTATTTTTTGTTTTACAGGTCACCTCATGGTTCACATGCAAGTTTGATGAAATTTTTCTTGCTTAATTTATGCTCGACAAAATCTCTATATAGGGCTTTCTACATATAAGGCCTTCAATGTTGGGTCTTATTTCATATATGTCCTCTTATATCCATAAATTACATAAATGTCTTATTGGGTCATGATATTTCACAAATGACCAATTCCATTTACTATTCTAGCCTTCCCATTACAGTTTTGATTTTCCACCAATTTTGAATAAATAATAATTTTAAATAAACAAAAAAGGCAACTATTCATCTCCATCTTCCACAACCGTCTTTTATTTTCAACGTACACATATATGGAATAAACACCATATCTTCCTCATCCCCAGTTTTCTCTCCACTTCCTTACATTCGGTTTCTTCGATTTTCTCCGATTTCTTCCGTCCTCCGCATCTCTGTCTCCTTCAGTTGTCGTCTTCTTCTTTTTCGTCTTCTGTTCTATTCGGTTTCTTCTACCTCTTCTAGTCTACGTCTTTTTCGTCTTCATCTTCTTCGTCTTTAGTGGCCGCTTTCGTCTTCTCCGGTTCAAGTTTTCTTCTTCGTCTCAGAGCTCTTCGGTTCCTGCTACGTTCGCTCACAGTAAGTAAGGGTTCTTCGATTTTCAATAATTTTTAGATTATTACATTCAGTTACTTTGATTTCAGATGATTTGTTACTGAAAAATTGCATTTTGGTACAAATGATCGAACATGCAAATGTTTTAGGAGGCATCTGTTTTCTGCATTGTACAAATGAGCAAATATGCCTCTGTTTTCTACATTTTACATAGGGTTTACATTGTATGAATCAAAGAGAATGGAAATGTTTTAGGGTTCACATAAGGGCTTAGTATAATGTGCTATAGTATATGCCTCTGTTTTCTACATTTTACATGGGGATTACATATGTCAATGTTTTCTGCATTGGAGGAGTTACTCGATAATGCATACGTTCTAGGGTTTACATAAGGGTTTAGTATAATGTGTTATACTATATACGGTTAATGAGTGGAGATTTTTCACTACACTGTTTCATTTATAAAATATATACTGGAGTATATACAGGTTTAACTTGTTCAGTGTAGTTTAGTTTATATGAAACAACAGTTATATATACTTTAGTTTATATACTATAATCTAACATGAGTACAAATGTTTTGTTTGGTTTACATATACTGTAGTTAATAATATATAGGTATGAATACAGTTCATATGGTTGATTGCAATCATGGTTCGTGTGAAATTACCGGTGACAAAGGAACAAAGAAGACGAAGCAATCGACTTATAGGATCAACAAGCAGGCCAACATACAAACCGAAAAAGGAGAAGACCAATGTCATTAGCCTTTCTTCTGATGTAAGATTTAATGTATACTATATCAATTATATAAACAATAACAAATTATGTGAACCTAATCTTTTCCTCCATTGAATCTGTATAGAATGAGGATACAAACCAACCACCTAAACAGGTGAAGGTAGAGGATAATACTGAACTGCCTTCATCGTCCAAATTTCATGAAAGGTTATTTGGAGACGCTGAAAGTGACTTAAGAGTAGTACAACCAGGTGAGGAAGTTGTACAGGATATGGTGGAGGATTCGTTTGGAACACAAATAGTTCCGTATGGATACAAGTTTGAGGTAAATAATTAATAGTATATATTGAACAAACAATTATTAAGAACAATGATTACTAATGTATATTACATATAGATGGAGCATATACCTAAAGATGACATGGTCGAACCTAACATAATAGAGGAAGAGGGCATTGTTAGGGAAACACTTGATGAGATTTATAACTTATGTACTATTGTTTAATGGATGTTAATATGTATTTATGTCATATTCATAACTATTTTTTTTTCTGTATTAGGAAATTTTATGCCAAGATATTGATGAGGACATGACGCAAGATCATGGGACAACAGAGAAAGAGGTTTCTGGCGAAGAATCTAAGGTATATAACCAAGGATTTATGTTATATATATATTAAAGGGATTCCATTGTGGTGTAACATGATGGTGACAACGTTCCCCTTGAAACTAGGAAGAGGGAACTATTAAAACAGAAAGGGAAAGAAACAAAAAAAAAAATGTTGATCAAAGGGAACGTGTAAGTAAGGTACATATCTTATTACACCAAAGTAGATATCTGATATACTTGTTGTTATATATATATGTTAAATTTGATGACTATTTTATTTGTTCTCACGATAATATGTTCCTGCGAACACACCACTGCAACAAAGTGAACGAAAGAAAACACATCAAGCAAAAGTCCATACTCGTGAAAAGGTATGACATATTAAACTTTCAATTTAAAAATAAAAATGGACTTTTATTATTAAATTTGCTTTTCTATAGGAAAAAATACCAAGAAAAAGAATAAGGAGATCTGAAGGAAGAAGCACCATGAAAAGGAAAGAAAATGTGACTAAGGTATACACTGAAGTTTATTTGTATATCATACAAAGTTTGGATGATTGTTCAAGTTTATTAAATTAAATCTGTATGGTGTTTCAGACCGGCTGTGTGAAAGAAATGGTGAATTCAATCCCTTATGGTATAAAGGAGGCAAATCGTGCTGACTTAGATAGGTTGTATGAGGTAATTTGAAATATTTGGTAGTTTATTTGAAATATTGAACATTCAATAGTTTATTTGAAAGTGACAAACTTCATGAACAAATTACAGGATGCACCGACATCATTGCCTAGACATAGGTGGTTTAATGTGCAAAAGCTCAATGTTTATGAATATCAGTGCTAGGACAAACTATAACAGAAAACTTTAAATTAATCAGCGTAACTGCATTACATAAGATAACTTACCCATACCAATACAGGGGAGTACTCAATTCTGCAAATCTTTGAATATAGAGGTTCATAATATAGTGACGACCGCAAAAAATGGAAACTCGAGCAGAAATAAAATGAAAAACGAGCTTGAATGTTAACGACAATGGCAGATGTAAGAATCGTATTTCATTAATCGTTTATTATGGAAGTTAACAAGCATATAATCTACTGGATATGAAGATGACAATATTAATTGTAATGCCTATAATTGTGGAAGTATGTATTCATTATGAATGTCATAAATAAAGCACAAAATATATTAAATATCAAAAGATATATTAATATATTATGCATACCATAAATAGATCTCGGTTTTTCAAAATGATAAATGTGTTTATTAATTGATCCGTTTAGCGCATTTTTGTCCCAAAATCTTATAAATTTCCTATTTTGAAATATTTCAAACAAGAAGTCCATTAGTGAAATATTTAGCTTGAAGAGTATTTATTCTGTAAAAATTTCTATATATTATATATTCTTATTTTACAATATTGCATATATCACCTCTTATTGCTTAATCTATTTATCCCTTCAAGGATCTAGAGGTAAAATTTATCTTCTTGCTCGACAAAATATTGCATATATCAAGCCGTCGGCAGAAATGTGGGACGGTAGTGAATGGTCGAGTTCCTCTGCTTTGTTCTTCGTCGGGGAAATGGAATGTGCTTAGGGATCTGAAGGGAGTTAGGAATTTGGGGGGAACGAAAACCCTAAAGTCGTGGAAGAGTTCAGGGTCGTTATACGGTTTGGTGATGCAGAGGAAGACGACGACCGCCGATCTCCCTCCATCGGAGAAGAGCTTTAAGGTTTCTAGGGGATCTTCGGACATGGAAAGGTAAAATCCATAACCCTTGCGGTGGAGGCGATTGCTCTCAAATTGAATATAGAATCGTTGTCATTATCCACATTCATCAATTCGTTCGATTCAAAAGAAATCAAAGAATGGGAGAGATTTTCGTTGAAGACAAATCCTTACTTATATTGAATTGTTTTTTAATTAGGAATCCATGATAAAAGATATTTGTTGAACCTTAGTAATTTGTATATTGTATTGAATAATTGCTTGAATTTAGAATATATTAAAAATGCAAATAAATAGACTCTAATAAGACTCAATTAAGGAAATAAACTAACAAAGGAAAAATACATAAAAAGAAGAAAATAATAAAGGAAAACACTAATTAGAAATAAACTACTTAATAATAAATCCTAATTTAACTTTAACAAAAATATTTCACCTATCTCCAGTCATTTCAATATCAATATCAATGTAAGTGTAAAGAAAAATGGCAAACTCAAAATCTCCATGGTATCACATAGCCCAAGCTCCAATCAATGTGCTTGACCATATTGTTTGGCATATCAATAATGGCAAAGACACCTTATTCTTATTCTGGTTCCATAACTGGTCTCCCAATGGTGTTCTTTGCAAAAGTGTCCCTCGTATATTTGCCTTAATTAGCAATCCTCTATTGATTGTATTTGAGGCTTGGAACAGGGTTCTCGGTATATGGGAAATGCATTCTCAACACCCATGGCTGCAAAGAGAAATAGAGGCCTGGACTTCTTTGACTAATCAGTGGCATCCTCCTCATAATTTGTCCTCTAACGATGTCATTAAATTGATGTTATCTTTTGATGATCTCTTCAATGTGAAATCGCTCAAGCTTCATATGCATAATATCCTTCCCGACAACACTTATCGTAATGTTGGAAACATGTGGTCTTCTTTATGGCCCAAAAAATGTAAATTTTTCATATGGACCATTATCCATAACGGCCTCAATTCCATGGAGAATCGCCAAGCTAGACATCCTTCGTTGCACCTTAACCCCAACTGGTGTGTTTTGTGCAGGAATAGCATGGAAATAGTGGAGCATATGTTCATTAACTCTAGTTTTTCTAAAACTATTTGGATCGCTTCACCGATTTGGCTATAGATGATCTGACCTCGACACTGAGCACATTGCTAGAACACTTGATCCATATCAAAATGACTTCAAAGTCCAAAATTTTGTGGAGCAATATTATTGCAGCATCCTTGTGGTTTATTTGGAAGAAAAGAAACCGAAGAATCTTCCAAGAGTCCATTAAAACACAATCTTATGTGTGGGTAGATGTTATTTCAATAGCGAATTGGAGTTCCATATCTAACTTATTTTGTAATTATGATGTATCTTCTATCTCTCTAAATTGGAGGGCTTTTCTCTAGCCTCCTTTGATTTTGTTTGAGCTACTCTTTAGCGCTCTCTGTACTGGTACTTCATGACTCTGGGTATGATAAAGGTGCTAAGGAGGTGTAAACCTAGTTGAGATGTCGAGTGCACCTCCTGATCCCACACTAGTATTTTGTTTAAAAAAGAAATGTAGTGTAAAGAAAAATAGTAAACTAGGACACCAAATTTTCATTTCTAAACTTTATACTTGCAATGGATTAAATATTTTTTAATTTTGTTTTTAGTTGAACAATATGCAGTATGAGTTTGACGATATGA

mRNA sequence

ATGGTATCGATCAAGTTGAGGAAGGTGATAGTTTTGTGGCTCATCACAGCAGCTTTGGTCGAAGCTCGGGTTTTGAGGGTGACGTTACCTCCGCCGGCGGTTTCAAGGTATTATATTCACGTGGTAAACGGGCTAAGCAACGCCGATATGGTTGTGCACTGCCAATCGAAGGACGATGATTTGGGGTATCACCATTTAGTTAACCATGGAGATGATTACCAATGGAATTTTAAGAAATGTGGGACGGTAGTGAATGGTCGAGTTCCTCTGCTTTGTTCTTCGTCGGGGAAATGGAATGTGCTTAGGGATCTGAAGGGAGTTAGGAATTTGGGGGGAACGAAAACCCTAAAGTCGTGGAAGAGTTCAGGGTCGTTATACGGTTTGGTGATGCAGAGGAAGACGACGACCGCCGATCTCCCTCCATCGGAGAAGAGCTTTAAGGTTTCTAGGGGATCTTCGGACATGGAAAGTATGAGTTTGACGATATGA

Coding sequence (CDS)

ATGGTATCGATCAAGTTGAGGAAGGTGATAGTTTTGTGGCTCATCACAGCAGCTTTGGTCGAAGCTCGGGTTTTGAGGGTGACGTTACCTCCGCCGGCGGTTTCAAGGTATTATATTCACGTGGTAAACGGGCTAAGCAACGCCGATATGGTTGTGCACTGCCAATCGAAGGACGATGATTTGGGGTATCACCATTTAGTTAACCATGGAGATGATTACCAATGGAATTTTAAGAAATGTGGGACGGTAGTGAATGGTCGAGTTCCTCTGCTTTGTTCTTCGTCGGGGAAATGGAATGTGCTTAGGGATCTGAAGGGAGTTAGGAATTTGGGGGGAACGAAAACCCTAAAGTCGTGGAAGAGTTCAGGGTCGTTATACGGTTTGGTGATGCAGAGGAAGACGACGACCGCCGATCTCCCTCCATCGGAGAAGAGCTTTAAGGTTTCTAGGGGATCTTCGGACATGGAAAGTATGAGTTTGACGATATGA

Protein sequence

MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKKCGTVVNGRVPLLCSSSGKWNVLRDLKGVRNLGGTKTLKSWKSSGSLYGLVMQRKTTTADLPPSEKSFKVSRGSSDMESMSLTI

Homology

[Close]

BLAST of Clc09G09870 vs. NCBI nr
Match: XP_038896433.1 (S-protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  IKLRKVIVLWLITAALVEA-RVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLG 63
          I+ R V+ LWLITAALV A ++LR+TLPPPAVSRYYIH+VNGLS  DMVVHCQSKDDDLG
Sbjct: 2  IQFRNVLFLWLITAALVGADQILRLTLPPPAVSRYYIHIVNGLSKFDMVVHCQSKDDDLG 61

Query: 64 YHHLVNHGDDYQWNF 78
          YHHLVNHGDDYQWNF
Sbjct: 62 YHHLVNHGDDYQWNF 76

[Close]

BLAST of Clc09G09870 vs. NCBI nr
Match: XP_038896423.1 (S-protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 6  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHH 65
          +R V+VLWL TAALV A++ R ++PPP  SRYY+HVVNGLSNADMVVHCQSKDDDLGYHH
Sbjct: 1  MRNVVVLWLATAALVGAQIPRWSVPPPQPSRYYVHVVNGLSNADMVVHCQSKDDDLGYHH 60

Query: 66 LVNHGDDYQWNFKK 80
          LVN GDDYQWNFK+
Sbjct: 61 LVNRGDDYQWNFKE 74

[Close]

BLAST of Clc09G09870 vs. NCBI nr
Match: KAA0026247.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK04330.1 pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-25
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDD 60
          M+S +   VIVL L+    V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDD
Sbjct: 1  MISTRFWNVIVLGLVMVVFVKARVLRMTLPPPSVTRYYIHVMNGLSNADLIVHCQSKDDD 60

Query: 61 LGYHHLVNHGDDYQWNFKK 80
          LGYHHL N GDDYQWNFK+
Sbjct: 61 LGYHHLANRGDDYQWNFKE 79

[Close]

BLAST of Clc09G09870 vs. NCBI nr
Match: XP_008458117.1 (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-23
Identity = 50/60 (83.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 20 VEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK 79
          V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDDLGYHHL N GDDYQWNFK+
Sbjct: 5  VKARVLRMTLPPPSVTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKE 64

[Close]

BLAST of Clc09G09870 vs. NCBI nr
Match: XP_022933266.1 (S-protein homolog 74-like [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-22
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 6  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHH 65
          ++ ++V +L+T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHH
Sbjct: 2  IKNIVVFFLLTVALVGAQVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHH 61

Query: 66 LVNHGDDYQWNFK 79
          L+NHGDDYQWNFK
Sbjct: 62 LLNHGDDYQWNFK 74

[Close]

BLAST of Clc09G09870 vs. ExPASy TrEMBL
Match: A0A5A7SNG3 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11658G00010 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDD 60
          M+S +   VIVL L+    V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDD
Sbjct: 1  MISTRFWNVIVLGLVMVVFVKARVLRMTLPPPSVTRYYIHVMNGLSNADLIVHCQSKDDD 60

Query: 61 LGYHHLVNHGDDYQWNFKK 80
          LGYHHL N GDDYQWNFK+
Sbjct: 61 LGYHHLANRGDDYQWNFKE 79

[Close]

BLAST of Clc09G09870 vs. ExPASy TrEMBL
Match: A0A1S3C8C8 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103497646 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-23
Identity = 50/60 (83.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 20 VEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK 79
          V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDDLGYHHL N GDDYQWNFK+
Sbjct: 5  VKARVLRMTLPPPSVTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKE 64

[Close]

BLAST of Clc09G09870 vs. ExPASy TrEMBL
Match: A0A6J1EYK7 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440332 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.0e-23
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 6  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHH 65
          ++ ++V +L+T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHH
Sbjct: 2  IKNIVVFFLLTVALVGAQVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHH 61

Query: 66 LVNHGDDYQWNFK 79
          L+NHGDDYQWNFK
Sbjct: 62 LLNHGDDYQWNFK 74

[Close]

BLAST of Clc09G09870 vs. ExPASy TrEMBL
Match: A0A6J1F4F3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440331 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 6  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHH 65
          ++ ++V +L T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHH
Sbjct: 2  IKNIVVFFLFTVALVGAQVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHH 61

Query: 66 LVNHGDDYQWNFK 79
          L+NHGDDYQWNFK
Sbjct: 62 LLNHGDDYQWNFK 74

[Close]

BLAST of Clc09G09870 vs. ExPASy TrEMBL
Match: A0A6J1EZB7 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440401 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 6  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHH 65
          ++ ++V +L T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHH
Sbjct: 2  IKNIVVFFLFTVALVGAQVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHH 61

Query: 66 LVNHGDDYQWNFK 79
          L+NHGDDYQWNFK
Sbjct: 62 LLNHGDDYQWNFK 74

The following BLAST results are available for this feature:

BLAST of Clc09G09870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896433.1	2.1e-26	82.67	S-protein homolog 1-like [Benincasa hispida]	[more]
XP_038896423.1	1.4e-25	78.38	S-protein homolog 1-like [Benincasa hispida]	[more]
KAA0026247.1	5.2e-25	72.15	pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK04330.1 pumilio-like...	[more]
XP_008458117.1	6.4e-23	83.33	PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo]	[more]
XP_022933266.1	1.9e-22	71.23	S-protein homolog 74-like [Cucurbita moschata]	[more]

BLAST of Clc09G09870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G09870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNG3	2.5e-25	72.15	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11658G...	[more]
A0A1S3C8C8	3.1e-23	83.33	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103497646 PE=3 SV=1	[more]
A0A6J1EYK7	9.0e-23	71.23	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440332 PE=3 SV=1	[more]
A0A6J1F4F3	1.5e-22	71.23	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440331 PE=3 SV=1	[more]
A0A6J1EZB7	1.5e-22	71.23	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440401 PE=3 SV=1	[more]

BLAST of Clc09G09870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 39..79 e-value: 1.7E-7 score: 31.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G09870.2	Clc09G09870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane