Clc09G09700 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G09700
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 8375017 .. 8376317 (-)
RNA-Seq Expression	Clc09G09700
Synteny	Clc09G09700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAATGGCTCTCTCCTTTGCCAATCGATCTTCATTCCTTTGCATCGTTTGTATTGCTCTCCTTCTCGTTGCAGGTAATGAATTCACACTCTCTTATTATATTAACATTATTTCTACTTTTCCTTTATCTTTACTCTTTCCATCATCTTTAATATATATCACTCATTATATTGGTAAATTTTAAACCAATAATAAATTTACATATGGGCTTCAAACCGTTGTTTTCAAATATAAAGCAAAATGAGTCGATTTATTTACAAATAAAAATACTGCAGTCTATTAGTTAATAGACAACGATAGACATGACTTACAGTAATATTTTGTTATATTTGAAAATATTTCCAATAGTTTTGTTATTTAAAACAATTACACGACTCCAAATTAATGAGAGTTGAAAAGTCAAACCAAACCAATCCACTGGTTTGGTTTGGTTTTTTAGTACAAAATTGAACATGGTTTGTATTTAGAGAAAACAAAAAAGTATTGATTCAGATCGGTTTTTTATTGGAAAAACCAAACCGAATTGAAGGTATATATACCCTTAAAATGCACTCTAACATTAGGTATTTTAACTACTATGATGCATGTATATATATTTGTTTGTTTAGAAAGAAAAAAAAATATTGATTACTATAGAGCATGTATGTTTGTCGTTCAGAAAAGTGCAAAGAAAAAACAAAAATTTTCAATTTCGATTTGTAAAAAAAGACATAGATTCAAATTTAAAAATAACCCATTCAAAACAAAAGTAGAAATAAAACTAAAATAAATGAGAAGAAAAAAAAATGCTAAAAACCGGGAACCAAACGGATAATAACCTGAACCAAATAAAAACCAATCCGTTAGTTTTGTTCTTATTGGATTTCTATTTAGATCTCTTCTTTATAAAAACGGTTTGGTTTAGTTTGATTGTTGGCTGATCCTAAAATAGACAAAATCTAACCAACAAATTAAAAAAAAAAAAAAAAAAAATTGGTTGATTGGTGTGATTGGCAGGGACAGGACCAGAGGCAACATGCGGGCAAACGACAACTGGGGCATGTTTGGGAGGCTGCTCAGGTTTCCCAAATTGTAACAAAAGTTGCCTTGATGAAGGGTATAAGCAAGGTGGTAAATGCTACCCCGACGGTTTATGCTGCTGTTCTAATTTCTGATTCCTATGCTCTCAGCTTTTCTTCTTTTCAATCCAATAAATTTTCAACTCTCTACATATTGTATTTCTTCTTCATTCCCATCAAGGCTTTAATTTGCCGTTGAACTACAATATGTAAATTATGTTCTGTGATTGTTACAAACCCC

mRNA sequence

CAAAAAATGGCTCTCTCCTTTGCCAATCGATCTTCATTCCTTTGCATCGTTTGTATTGCTCTCCTTCTCGTTGCAGGGACAGGACCAGAGGCAACATGCGGGCAAACGACAACTGGGGCATGTTTGGGAGGCTGCTCAGGTTTCCCAAATTGTAACAAAAGTTGCCTTGATGAAGGGTATAAGCAAGGTGGTAAATGCTACCCCGACGGTTTATGCTGCTGTTCTAATTTCTGATTCCTATGCTCTCAGCTTTTCTTCTTTTCAATCCAATAAATTTTCAACTCTCTACATATTGTATTTCTTCTTCATTCCCATCAAGGCTTTAATTTGCCGTTGAACTACAATATGTAAATTATGTTCTGTGATTGTTACAAACCCC

Coding sequence (CDS)

ATGGCTCTCTCCTTTGCCAATCGATCTTCATTCCTTTGCATCGTTTGTATTGCTCTCCTTCTCGTTGCAGGGACAGGACCAGAGGCAACATGCGGGCAAACGACAACTGGGGCATGTTTGGGAGGCTGCTCAGGTTTCCCAAATTGTAACAAAAGTTGCCTTGATGAAGGGTATAAGCAAGGTGGTAAATGCTACCCCGACGGTTTATGCTGCTGTTCTAATTTCTGA

Protein sequence

MALSFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQGGKCYPDGLCCCSNF

Homology

[Close]

BLAST of Clc09G09700 vs. NCBI nr
Match: KAG6575964.1 (hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1  MALSFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQ 60
          MA SFA RSSF  ++C+A +L+AG G            CLG CS  PNC  +C++ G+ +
Sbjct: 1  MASSFAMRSSFSFLLCMAFVLIAGLGTRPGSAINLAVVCLGPCSKIPNCENACINAGHAK 60

Query: 61 GGKC---YPDGLCCCSN 75
          GG+C   + D   CC N
Sbjct: 61 GGECLGFFKDPPSCCCN 77

[Close]

BLAST of Clc09G09700 vs. NCBI nr
Match: PIM97201.1 (hypothetical protein CDL12_30331 [Handroanthus impetiginosus])

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 4  SFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQGGK 63
          S A    F+ I+C+ L+L++G   +   G      C+G CS F +CNK+C+ +GY+ GG 
Sbjct: 3  SCAQNDYFMGILCLILVLISG---QVVKGIKEPFVCIGKCSDFEDCNKACISKGYQLGGY 62

Query: 64 CYP----DGLCCCS 74
          CY     D  CCC+
Sbjct: 63 CYGFSVLDLACCCT 73

[Close]

BLAST of Clc09G09700 vs. ExPASy TrEMBL
Match: A0A2G9FW97 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30331 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 4  SFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQGGK 63
          S A    F+ I+C+ L+L++G   +   G      C+G CS F +CNK+C+ +GY+ GG 
Sbjct: 3  SCAQNDYFMGILCLILVLISG---QVVKGIKEPFVCIGKCSDFEDCNKACISKGYQLGGY 62

Query: 64 CYP----DGLCCCS 74
          CY     D  CCC+
Sbjct: 63 CYGFSVLDLACCCT 73

The following BLAST results are available for this feature:

BLAST of Clc09G09700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575964.1	3.3e-06	41.56	hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PIM97201.1	9.0e-04	37.84	hypothetical protein CDL12_30331 [Handroanthus impetiginosus]	[more]

BLAST of Clc09G09700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G09700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9FW97	4.3e-04	37.84	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30331 P...	[more]

BLAST of Clc09G09700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G09700.1	Clc09G09700.1	mRNA