Clc09G09110 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G09110
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ribonuclease 1-like
Location	ClcChr09: 7832321 .. 7834403 (-)
RNA-Seq Expression	Clc09G09110
Synteny	Clc09G09110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAATTTAATTTGGAGATTGTGTATAAATGGTGGTGTGTTATGGATGGATGGTATGTGCCCAAAAATCTGAAGCCAAAACTAAGGTAATATATGATGGGAAAGAAAGCAAGTGTGTTGGTTATGAGCCTACTGGTTCTAATAGGTTTGTCCAAACAAGATGCTTTCGACTATGTTCAAGTGGTGTATGAATGGCAGCCAGCCATTTGCAACCTTGGAAAGAGCTGCAAAATAGCACCAGAGAATAGGTTTGGTATTCATGGTGTATGGCCTAGCGTCTACTCCAAGGGCCAAATTGGACCTTGCTCTGGCCCTTCTTTTGACCCCCTCAAAGTAATTCTAAACATTAACTCAATTCTCTAGAAGTATATATATGTTTATTTGTCCATTTAAATTACACTTTTTAACCTCTTCTCAACTTGTTAAACTTTCATTATTAATATTTTAAGTGTCTAGTTAACATCCAATAATCCAAAATCTACCTTTGATTTTTCAAGGATTTCCTCCTCCAAAATGGTGCACATGCATAATATTTTATGAGACACTAGTTTCATCTCAGAGTTTTAAAAAATGTATCATTTTAGTCCTTCAATTTTTAAGAATAAATTTAAAAATTTTCTCAAATAATTTTTATTATTATTTTAAATAATTATATGACATCTTGAATTAGAAAGATCATTTTAAAAATTAAAAAAAAAAATTATCACTACTCTTTAAAATTACTTTAAAAAATAATTTTCTAAATATCATATAATTATTTAAAATAATTAAAAATAATTACTTCAACAACCTTTTGAACCTATTCTTAAAATCTACATGAGTGTTTGGTCCACGACTTCACAAGTTGGTGTTAAAAAACTCAATTCTGCCAACTTCAATGGTTAGTGTTTACTTAATAAGTTTACACATTTATTGAGGTAGCTCCATTTTTACCATTTTTTTTTTTTTTTTGCACATTTATTAATGAACTTCAACAAAATAACTATGTACTCCAAAACATGTACTCCAAAACCAGACTTTCTAGCTCCAAAATATTAATTTCAAAATTTAGAGCTCAACTCAACACCTAAAATATCCTAAGTGACTAAAAAGGTTCATCTCCAAAACTTAAGAACCAAGTACACATATTTTTCGAAAAACTAAAAAGATACATTTTTAAACTTAGAGACGAAACATATATACTTCACAGAAAAATACTTAAGTGCTCCCTGGCTGCACTTATCTTTATGCAAACTAAGGTGACATTTTTTATTTTTTTTTAAAAATGTTAAAAAAAAAAAAAATGAGTATTATGTGCAGTCTATATCTAACCATTACAACTTAGAAACTAGAAAGCTAATTTTCGCAAAAACAAACCTCCCTCTAACACAAGATTCTAAATTTACCTGTGGTTGGGTTATCTAGATCATCTCATTACAAGACCGGATGAGCGAATACTGGCAAGACCTGGAGAACGGGAACCCGATGGAAGCGTGGGCGATGAAGTGGGGGATCCACGGGACTTGCTCTGCGACCGTGTTTGATCAGTTCAAGTATTTCTGTTTGGGTTTGGACACCTACGGCCGCCATTCCATGTTGTCATTTTTAGTCCGTGGAGGTTTAGTTCCCAGCTCTACCAAGAATCTAGCCAAAACTAGCTTTATCAAAGCCATCGCGGACTTGACCTCGAAGAAGGGCGGCGTCATCTGCGCCGCTGATCAACGTGGCCGGACACAACTTCAGAAGGCGGTTTTATGTTATGCCAAAGATGGTGCTACTCTCGTCGATTGCCCAGATAATGTTAGTAGTTCTTGCCCTGATTACTTCTTGTGGCTTGCCTTGGGTGATTGAGTTATGTAATGGAAGCTTATATTGTAATTTATAACTACTTAATGAATAAAACTAGTCTTCTGCCCATGCTTACCTATGTATCTATATGAGGTAGAAGGGAAGCTTTGTGTTTATTTGCAACATGGTTACGCTTAAAAGCAGAGAAGATAATGGAAATTATATTTTGAGATATGTAGTCTATAAACATCTGAATAATTCAAATGTTTAGAACAAAAAGGATATTAATGAAAGGCATCGTTGAAAAAGATAGAAA

mRNA sequence

GTGAAATTTAATTTGGAGATTGTGTATAAATGGTGGTGTGTTATGGATGGATGGTATGTGCCCAAAAATCTGAAGCCAAAACTAAGGTAATATATGATGGGAAAGAAAGCAAGTGTGTTGGTTATGAGCCTACTGGTTCTAATAGGTTTGTCCAAACAAGATGCTTTCGACTATGTTCAAGTGGTGTATGAATGGCAGCCAGCCATTTGCAACCTTGGAAAGAGCTGCAAAATAGCACCAGAGAATAGGTTTGGTATTCATGGTGTATGGCCTAGCGTCTACTCCAAGGGCCAAATTGGACCTTGCTCTGGCCCTTCTTTTGACCCCCTCAAAATCATCTCATTACAAGACCGGATGAGCGAATACTGGCAAGACCTGGAGAACGGGAACCCGATGGAAGCGTGGGCGATGAAGTGGGGGATCCACGGGACTTGCTCTGCGACCGTGTTTGATCAGTTCAAGTATTTCTGTTTGGGTTTGGACACCTACGGCCGCCATTCCATGTTGTCATTTTTAGTCCGTGGAGGTTTAGTTCCCAGCTCTACCAAGAATCTAGCCAAAACTAGCTTTATCAAAGCCATCGCGGACTTGACCTCGAAGAAGGGCGGCGTCATCTGCGCCGCTGATCAACGTGGCCGGACACAACTTCAGAAGGCGGTTTTATGTTATGCCAAAGATGGTGCTACTCTCGTCGATTGCCCAGATAATGTTAGTAGTTCTTGCCCTGATTACTTCTTGTGGCTTGCCTTGGGTGATTGAGTTATGTAATGGAAGCTTATATTGTAATTTATAACTACTTAATGAATAAAACTAGTCTTCTGCCCATGCTTACCTATGTATCTATATGAGGTAGAAGGGAAGCTTTGTGTTTATTTGCAACATGGTTACGCTTAAAAGCAGAGAAGATAATGGAAATTATATTTTGAGATATGTAGTCTATAAACATCTGAATAATTCAAATGTTTAGAACAAAAAGGATATTAATGAAAGGCATCGTTGAAAAAGATAGAAA

Coding sequence (CDS)

ATGATGGGAAAGAAAGCAAGTGTGTTGGTTATGAGCCTACTGGTTCTAATAGGTTTGTCCAAACAAGATGCTTTCGACTATGTTCAAGTGGTGTATGAATGGCAGCCAGCCATTTGCAACCTTGGAAAGAGCTGCAAAATAGCACCAGAGAATAGGTTTGGTATTCATGGTGTATGGCCTAGCGTCTACTCCAAGGGCCAAATTGGACCTTGCTCTGGCCCTTCTTTTGACCCCCTCAAAATCATCTCATTACAAGACCGGATGAGCGAATACTGGCAAGACCTGGAGAACGGGAACCCGATGGAAGCGTGGGCGATGAAGTGGGGGATCCACGGGACTTGCTCTGCGACCGTGTTTGATCAGTTCAAGTATTTCTGTTTGGGTTTGGACACCTACGGCCGCCATTCCATGTTGTCATTTTTAGTCCGTGGAGGTTTAGTTCCCAGCTCTACCAAGAATCTAGCCAAAACTAGCTTTATCAAAGCCATCGCGGACTTGACCTCGAAGAAGGGCGGCGTCATCTGCGCCGCTGATCAACGTGGCCGGACACAACTTCAGAAGGCGGTTTTATGTTATGCCAAAGATGGTGCTACTCTCGTCGATTGCCCAGATAATGTTAGTAGTTCTTGCCCTGATTACTTCTTGTGGCTTGCCTTGGGTGATTGA

Protein sequence

MMGKKASVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKSCKIAPENRFGIHGVWPSVYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATVFDQFKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQRGRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLWLALGD

Homology

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BLAST of Clc09G09110 vs. NCBI nr
Match: XP_038899255.1 (ribonuclease MC-like [Benincasa hispida])

HSP 1 Score: 419.9 bits (1078), Expect = 1.4e-113
Identity = 194/221 (87.78%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 1   MMGKKASVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKSCKIAPENRFGIHGVWP 60
           MM KKASV ++SL + I LSKQDAFDYVQVVYEWQPAICNLGKSCKI PEN FGIHGVWP
Sbjct: 1   MMRKKASVFLVSLFLSIALSKQDAFDYVQVVYEWQPAICNLGKSCKIQPENEFGIHGVWP 60

Query: 61  SVYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATVFD 120
           SVYSKGQIGPCSGPSFDPLKI+SLQDRMS+YWQDLENGNP+EAWA KW IHGTCSATVFD
Sbjct: 61  SVYSKGQIGPCSGPSFDPLKIVSLQDRMSQYWQDLENGNPIEAWASKWAIHGTCSATVFD 120

Query: 121 QFKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQR 180
           +FKYFCLGLDTYGRH+MLSFLV GGLVPSS+K L KTSF+KAIAD+TSKKGGVICA DQR
Sbjct: 121 EFKYFCLGLDTYGRHAMLSFLVHGGLVPSSSKYLDKTSFVKAIADMTSKKGGVICAVDQR 180

Query: 181 GRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLWLALGD 222
           GRTQLQKAVLCYAKDG TL+DCPDNVSSSCPD FLWLALGD
Sbjct: 181 GRTQLQKAVLCYAKDGDTLIDCPDNVSSSCPDNFLWLALGD 221

[Close]

BLAST of Clc09G09110 vs. NCBI nr
Match: XP_004149779.2 (ribonuclease MC [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 5.5e-102
Identity = 177/221 (80.09%), Postives = 194/221 (87.78%), Query Frame = 0


Query: 1   MMGKKASVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKSCKIAPENRFGIHGVWP 60
           MMGKKASV ++SLL+LIGLSKQDAFDY QVV+EWQPAICNLG SCKI P+N FGIHGVWP
Sbjct: 1   MMGKKASVFLVSLLLLIGLSKQDAFDYFQVVHEWQPAICNLGNSCKIQPKNEFGIHGVWP 60

Query: 61  SVYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATVFD 120
           SVYSKGQIGPC GPSFDPLKIISLQDRM++YW+DLENGN +EAWA KW +HGTCSA  FD
Sbjct: 61  SVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFD 120

Query: 121 QFKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQR 180
           QFKYFCLGLDTYGRH++ SFL R GL PSS+K +AK SFI AIA+ T KKGGVICA DQ 
Sbjct: 121 QFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY 180

Query: 181 GRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLWLALGD 222
            R QLQKAVLCY KDG TL+DCPDNVSSSCPD F+WLALGD
Sbjct: 181 RRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD 221

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BLAST of Clc09G09110 vs. NCBI nr
Match: KGN45018.2 (hypothetical protein Csa_016393 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 1.6e-101
Identity = 176/220 (80.00%), Postives = 193/220 (87.73%), Query Frame = 0


Query: 2   MGKKASVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKSCKIAPENRFGIHGVWPS 61
           MGKKASV ++SLL+LIGLSKQDAFDY QVV+EWQPAICNLG SCKI P+N FGIHGVWPS
Sbjct: 1   MGKKASVFLVSLLLLIGLSKQDAFDYFQVVHEWQPAICNLGNSCKIQPKNEFGIHGVWPS 60

Query: 62  VYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATVFDQ 121
           VYSKGQIGPC GPSFDPLKIISLQDRM++YW+DLENGN +EAWA KW +HGTCSA  FDQ
Sbjct: 61  VYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQ 120

Query: 122 FKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQRG 181
           FKYFCLGLDTYGRH++ SFL R GL PSS+K +AK SFI AIA+ T KKGGVICA DQ  
Sbjct: 121 FKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYR 180

Query: 182 RTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLWLALGD 222
           R QLQKAVLCY KDG TL+DCPDNVSSSCPD F+WLALGD
Sbjct: 181 RIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD 220

[Close]

BLAST of Clc09G09110 vs. NCBI nr
Match: XP_022143591.1 (ribonuclease 1-like [Momordica charantia])

HSP 1 Score: 232.6 bits (592), Expect = 3.2e-57
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 88  MSEYWQDLENGNPMEAWAMKWGIHGTCSATVFDQFKYFCLGLDTYGRHSMLSFLVRGGLV 147
           M EYWQDL +G+   AW  KW IHGTCSATVFD+FKYFC+GLDTYGRH++LSFLV GGLV
Sbjct: 1   MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLV 60

Query: 148 PSSTKNLAKTSFIKAIADLTSKKGGVICAADQRGRTQLQKAVLCYAKDGATLVDCPDNVS 207
           PSS +   KTSFIKAIAD+TSKKGGVICAADQRGRTQL+  VLCY+KDGAT++DCPDNVS
Sbjct: 61  PSSAQLHHKTSFIKAIADVTSKKGGVICAADQRGRTQLKMVVLCYSKDGATMIDCPDNVS 120

Query: 208 SSCPDYFLWLALGD 222
           SSCPD FLWLALGD
Sbjct: 121 SSCPDKFLWLALGD 134

[Close]

BLAST of Clc09G09110 vs. NCBI nr
Match: XP_022159333.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 7.9e-40
Identity = 87/220 (39.55%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 2   MGKKASVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICN---LGKSCKIAPENRFGIHGV 61
           M K+  + V+ LL+ I  S+Q +FDY QVV++WQPA CN   L   C   P+NRF IHGV
Sbjct: 1   MAKREIIFVLVLLLFIASSEQASFDYYQVVFQWQPATCNDITLPTRCVQNPDNRFSIHGV 60

Query: 62  WPSVYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATV 121
           WPS  S  ++GPC+G +FDP  I+S++  +++ W D+        W+ +W  HGTCS  +
Sbjct: 61  WPSKTSGSRVGPCNGTAFDPATIVSIRAGLNQNWPDVIRRKNQVFWSDEWRKHGTCSEDL 120

Query: 122 FDQFKYFCLGLDTYGRH--SMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICA 181
            +Q +YF  GL+ Y      ++  L +  ++P+  K   K    KAI+ +  K+ G  C 
Sbjct: 121 LNQLQYFTFGLNIYHDEGKDIVEKLGKKKIIPNG-KKYKKADVEKAISSVIGKRLGFRCN 180

Query: 182 ADQRGRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLW 217
            DQ    QL +   CYAKD +TL DCP N +++CP  F W
Sbjct: 181 IDQSNYHQLHEISFCYAKDASTLQDCPSN-ATNCPTKFKW 218

[Close]

BLAST of Clc09G09110 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.0e-21
Identity = 58/185 (31.35%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 25  FDYVQVVYEWQPAICNLGK--SCKIAPENRFGIHGVWPSVYSKGQIGPCSGPSFDPLKII 84
           FD    V +W PA+C+  K  SC  +    F IHG+WP            G  FD  KI 
Sbjct: 1   FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKIS 60

Query: 85  SLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATVFDQFKYFCLGLDTYGRHSMLSFLV 144
            LQ +++  W ++   N  + W+ +W  HGTCS + F+Q  YF L +D    + ++    
Sbjct: 61  HLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDII---- 120

Query: 145 RGGLVPSSTKNLAKTSFIKAIADLTSKK----GGVICAADQRGR-TQLQKAVLCYAKDGA 203
            G L P +     +T   +AI      K     G+ C  D + + + L + V C+A+DG+
Sbjct: 121 -GALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 180

[Close]

BLAST of Clc09G09110 vs. ExPASy Swiss-Prot
Match: O80324 (Ribonuclease S-6 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 54/209 (25.84%), Postives = 93/209 (44.50%), Query Frame = 0


Query: 9   LVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKS-CKIAPENRFGIHGVWPSVYSKGQ 68
           +V SL+VLI  S    ++Y Q   ++QPA+CN   + CK  P+  F +HG+WPS      
Sbjct: 12  MVFSLIVLISCSSTMGYNYFQFTQQYQPAVCNSNPTPCKDPPDKLFTVHGLWPSNDVGDD 71

Query: 69  IGPCSGPSFDPLKIISLQDRMSEYWQD-LENGNPMEAWAMKWGIHGTC--SATVFDQFKY 128
              C   +    +I +L  ++   W + L+  + +  W  +W  HG+C  + T+ D+  Y
Sbjct: 72  PIYCKNKTIKSQQIGNLTAQLIIIWPNVLDRTDHVGFWNRQWNKHGSCGKAPTIKDEMHY 131

Query: 129 FCLGLDTY--GRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQRGR 188
           F   +  Y   + ++   L R  + P   K   +   I AI   T  K   +        
Sbjct: 132 FKTVIKMYITQKQNVSEILSRAKIEPEG-KIRRRDDIINAIRLGTKDKKPKLKCQKNNQT 191

Query: 189 TQLQKAVLCYAKDGATLVDCPDNVSSSCP 212
           T+L +  +C  ++    +DCP +     P
Sbjct: 192 TELVEITICSDRNLTQFIDCPRSSFKGSP 219

[Close]

BLAST of Clc09G09110 vs. ExPASy Swiss-Prot
Match: O80322 (Ribonuclease S-1 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-14
Identity = 57/213 (26.76%), Postives = 94/213 (44.13%), Query Frame = 0


Query: 9   LVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKS-CKIAPENRFGIHGVWPSVYSKGQ 68
           +V SL+VLI  S    +DY Q   ++QPA+CN   + C    +  F +HG+WPS  +   
Sbjct: 12  MVFSLIVLILSSSTVGYDYFQFTQQYQPAVCNSNPTPCNDPTDKLFTVHGLWPSNRNGPD 71

Query: 69  IGPCSGPSFDPLKIISLQDRMSEYWQD-LENGNPMEAWAMKWGIHGTCS-ATVFDQFKYF 128
              C   + +  KI ++  ++   W + L   + +  W  +W  HGTC   T+ D   Y 
Sbjct: 72  PEKCKTTALNSQKIGNMTAQLEIIWPNVLNRSDHVGFWEKEWIKHGTCGYPTIKDDMHYL 131

Query: 129 CLGLDTY--GRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSK-KGGVICAADQRGR 188
              +  Y   + ++ + L +  + P+ T N        AI   T+  K    C  + R  
Sbjct: 132 QTVIRMYITQKQNVSAILSKAAIQPNGT-NRPLVDIENAIRRGTNNTKPKFKCQKNTRTT 191

Query: 189 TQLQKAVLCYAKDGATLVDCPDNVSS----SCP 212
           T+L +  LC  +D    ++CP         SCP
Sbjct: 192 TELVEVTLCSDRDLKKFINCPHGPPQGSRFSCP 223

[Close]

BLAST of Clc09G09110 vs. ExPASy Swiss-Prot
Match: O80325 (Ribonuclease S-7 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 0


Query: 9   LVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKS-CKIAPENRFGIHGVWPSVYSKGQ 68
           +V SL+VLI  S    +DY Q   ++QPA+CN   + CK  P+  F +HG+WPS  +   
Sbjct: 12  MVFSLIVLILSSSTVGYDYFQFTQQYQPAVCNSKPTPCKDPPDKLFTVHGLWPSNLNGPH 71

Query: 69  IGPCSGPSFDPLKIISLQDRMSEYWQD-LENGNPMEAWAMKWGIHGTCS-ATVFDQFKYF 128
              C+  + +P +I ++Q ++   W + L+  N +  W  +W  HG+C    + +   YF
Sbjct: 72  PENCTNATVNPHRIKNIQAQLKIIWPNVLDRTNHVGFWNKQWIKHGSCGYPAIMNDTHYF 131

Query: 129 CLGLDTY--GRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQRGRT 188
              ++ Y   + ++   L +  + P   +         AI + T+ K          G T
Sbjct: 132 QTVINMYITQKQNVSEILSKAKIEPLGIQR-PLVHIENAIRNSTNNKKPKFKCQKNSGVT 191

Query: 189 QLQKAVLCYAKDGATLVDCP 204
           +L +  LC         +CP
Sbjct: 192 ELVEVGLCSDGSLTQFRNCP 210

[Close]

BLAST of Clc09G09110 vs. ExPASy Swiss-Prot
Match: Q40381 (Ribonuclease S-7 OS=Nicotiana alata OX=4087 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-12
Identity = 50/202 (24.75%), Postives = 88/202 (43.56%), Query Frame = 0


Query: 7   SVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICNLGKSCKIAPENRFGIHGVWPSVYSKG 66
           SVL + L VL  +    AF+Y+Q+V +W  A C+    CK  P N F IHG+WP   S  
Sbjct: 8   SVLFVLLFVLSPI--YGAFEYMQLVLQWPTAFCHT-TPCKRIP-NNFTIHGLWPDNVSTT 67

Query: 67  QIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNP-----MEAWAMKWGIHGTCSATVFDQ 126
                +  +F  ++  + +D + + W DL             W  ++  HG C +  +++
Sbjct: 68  LNYCAAKENFKNIEDDTKKDDLYKRWPDLTTAETYCKQHQNFWRHEYNKHGKCCSESYNR 127

Query: 127 FKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICAADQRG 186
            +YF L +    +  +LS L   G++P              I  +T     + C    +G
Sbjct: 128 EQYFDLAMALKDKFDLLSSLRNHGIIPGRGMKYTVQKINSTIKKITQGYPNLSCT---KG 187

Query: 187 RTQLQKAVLCYAKDGATLVDCP 204
             +L +  +C+      +++CP
Sbjct: 188 IMELVEIGICFDSMVKNVINCP 202

[Close]

BLAST of Clc09G09110 vs. ExPASy TrEMBL
Match: A0A6J1CQQ9 (ribonuclease 1-like OS=Momordica charantia OX=3673 GN=LOC111013449 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.5e-57
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 88  MSEYWQDLENGNPMEAWAMKWGIHGTCSATVFDQFKYFCLGLDTYGRHSMLSFLVRGGLV 147
           M EYWQDL +G+   AW  KW IHGTCSATVFD+FKYFC+GLDTYGRH++LSFLV GGLV
Sbjct: 1   MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLV 60

Query: 148 PSSTKNLAKTSFIKAIADLTSKKGGVICAADQRGRTQLQKAVLCYAKDGATLVDCPDNVS 207
           PSS +   KTSFIKAIAD+TSKKGGVICAADQRGRTQL+  VLCY+KDGAT++DCPDNVS
Sbjct: 61  PSSAQLHHKTSFIKAIADVTSKKGGVICAADQRGRTQLKMVVLCYSKDGATMIDCPDNVS 120

Query: 208 SSCPDYFLWLALGD 222
           SSCPD FLWLALGD
Sbjct: 121 SSCPDKFLWLALGD 134

[Close]

BLAST of Clc09G09110 vs. ExPASy TrEMBL
Match: A0A0A0K4L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G351900 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.0e-53
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 88  MSEYWQDLENGNPMEAWAMKWGIHGTCSATVFDQFKYFCLGLDTYGRHSMLSFLVRGGLV 147
           M++YW+DLENGN +EAWA KW +HGTCSA  FDQFKYFCLGLDTYGRH++ SFL R GL 
Sbjct: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60

Query: 148 PSSTKNLAKTSFIKAIADLTSKKGGVICAADQRGRTQLQKAVLCYAKDGATLVDCPDNVS 207
           PSS+K +AK SFI AIA+ T KKGGVICA DQ  R QLQKAVLCY KDG TL+DCPDNVS
Sbjct: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120

Query: 208 SSCPDYFLWLALGD 222
           SSCPD F+WLALGD
Sbjct: 121 SSCPDNFVWLALGD 134

[Close]

BLAST of Clc09G09110 vs. ExPASy TrEMBL
Match: A0A6J1DYI5 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025745 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-40
Identity = 87/220 (39.55%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 2   MGKKASVLVMSLLVLIGLSKQDAFDYVQVVYEWQPAICN---LGKSCKIAPENRFGIHGV 61
           M K+  + V+ LL+ I  S+Q +FDY QVV++WQPA CN   L   C   P+NRF IHGV
Sbjct: 1   MAKREIIFVLVLLLFIASSEQASFDYYQVVFQWQPATCNDITLPTRCVQNPDNRFSIHGV 60

Query: 62  WPSVYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSATV 121
           WPS  S  ++GPC+G +FDP  I+S++  +++ W D+        W+ +W  HGTCS  +
Sbjct: 61  WPSKTSGSRVGPCNGTAFDPATIVSIRAGLNQNWPDVIRRKNQVFWSDEWRKHGTCSEDL 120

Query: 122 FDQFKYFCLGLDTYGRH--SMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICA 181
            +Q +YF  GL+ Y      ++  L +  ++P+  K   K    KAI+ +  K+ G  C 
Sbjct: 121 LNQLQYFTFGLNIYHDEGKDIVEKLGKKKIIPNG-KKYKKADVEKAISSVIGKRLGFRCN 180

Query: 182 ADQRGRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLW 217
            DQ    QL +   CYAKD +TL DCP N +++CP  F W
Sbjct: 181 IDQSNYHQLHEISFCYAKDASTLQDCPSN-ATNCPTKFKW 218

[Close]

BLAST of Clc09G09110 vs. ExPASy TrEMBL
Match: A0A6J1E0X1 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025395 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.8e-35
Identity = 85/221 (38.46%), Postives = 128/221 (57.92%), Query Frame = 0


Query: 2   MGKKASVLVMSLLVLIGLSK-QDAFDYVQVVYEWQPAICN---LGKSCKIAPENRFGIHG 61
           MGK+  +LV+S+ + I  S+  + FDY QVV +WQPA C+   L   C   PE+R+ +HG
Sbjct: 1   MGKREILLVLSMFLAISSSEGVNEFDYYQVVLQWQPATCSSATLKTVCVQPPEDRYSVHG 60

Query: 62  VWPSVYSKGQIGPCSG-PSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSA 121
           VWPS+ S G +  CSG P +D   I+++Q R+ + W ++  G   + W+ +W  HGTCS+
Sbjct: 61  VWPSL-SSGYLPTCSGTPPYDARMILTIQARLDQDWPNVITGQNPQFWSYEWTKHGTCSS 120

Query: 122 TVFDQFKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVICA 181
              +QF YF  GL  Y  + + S L + G+ P+  +   KT    AI   T K   + C 
Sbjct: 121 AYLNQFHYFNFGLWVYTNYDLQSILYQYGIYPNG-QQYTKTVVQNAIYSATGKWPALRCN 180

Query: 182 ADQR-GRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLW 217
            + R G  QL +  LC++K+G  L+DCP NV  +C +YF+W
Sbjct: 181 NNYRTGNMQLHEISLCFSKNGQILIDCPFNV-VTCNEYFVW 218

[Close]

BLAST of Clc09G09110 vs. ExPASy TrEMBL
Match: K7NBR4 (S-RNase OS=Siraitia grosvenorii OX=190515 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 86/222 (38.74%), Postives = 125/222 (56.31%), Query Frame = 0


Query: 2   MGKKASVLVMSLLVLIGLSK-QDAFDYVQVVYEWQPAICNLGKS----CKIAPENRFGIH 61
           M K+  VLV+S+LVLI   +  + FDY+QVV +WQPA C+        C   P+NR+ IH
Sbjct: 1   MAKREIVLVLSMLVLIASCEGLNEFDYLQVVMQWQPATCSASNKPYPICYQNPDNRYSIH 60

Query: 62  GVWPSVYSKGQIGPCSGPSFDPLKIISLQDRMSEYWQDLENGNPMEAWAMKWGIHGTCSA 121
           GVWPS+YS G    CSG  F+   I  LQ  +SE W ++ NGN +  W  +W  HGTC+ 
Sbjct: 61  GVWPSLYS-GAATQCSGSPFNANAISILQPGISEIWPNIINGNNLWLWGHEWDKHGTCTE 120

Query: 122 TV-FDQFKYFCLGLDTYGRHSMLSFLVRGGLVPSSTKNLAKTSFIKAIADLTSKKGGVIC 181
            + FDQ +YF   +DTY  +++L  L    + P+  +  ++     AI   T K   V C
Sbjct: 121 EILFDQDRYFSFAMDTYIDYNLLVLLGNSQITPNG-QIYSRDQVYAAIRAKTGKTPAVRC 180

Query: 182 AADQ-RGRTQLQKAVLCYAKDGATLVDCPDNVSSSCPDYFLW 217
             ++  G  Q+ +  LCY  D + +VDCP N ++ C +YF+W
Sbjct: 181 NYNRWTGEQQMHEVSLCYNHDASAVVDCPLN-ANKCDNYFVW 219

The following BLAST results are available for this feature:

BLAST of Clc09G09110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899255.1	1.4e-113	87.78	ribonuclease MC-like [Benincasa hispida]	[more]
XP_004149779.2	5.5e-102	80.09	ribonuclease MC [Cucumis sativus]	[more]
KGN45018.2	1.6e-101	80.00	hypothetical protein Csa_016393 [Cucumis sativus]	[more]
XP_022143591.1	3.2e-57	79.10	ribonuclease 1-like [Momordica charantia]	[more]
XP_022159333.1	7.9e-40	39.55	ribonuclease MC-like [Momordica charantia]	[more]

BLAST of Clc09G09110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23540	5.0e-21	31.35	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
O80324	1.6e-14	25.84	Ribonuclease S-6 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1	[more]
O80322	3.5e-14	26.76	Ribonuclease S-1 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1	[more]
O80325	1.3e-13	26.00	Ribonuclease S-7 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1	[more]
Q40381	9.4e-12	24.75	Ribonuclease S-7 OS=Nicotiana alata OX=4087 PE=1 SV=1	[more]

BLAST of Clc09G09110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQQ9	1.5e-57	79.10	ribonuclease 1-like OS=Momordica charantia OX=3673 GN=LOC111013449 PE=3 SV=1	[more]
A0A0A0K4L1	1.0e-53	75.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G351900 PE=3 SV=1	[more]
A0A6J1DYI5	3.8e-40	39.55	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025745 PE=3 SV=1	[more]
A0A6J1E0X1	4.8e-35	38.46	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111025395 PE=3 SV=1	[more]
K7NBR4	2.4e-34	38.74	S-RNase OS=Siraitia grosvenorii OX=190515 PE=2 SV=1	[more]

BLAST of Clc09G09110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 19..217 e-value: 8.8E-41 score: 142.2
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 25..216
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 25..202 e-value: 2.1E-28 score: 99.7
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 21..210
None	No IPR available	PANTHER	PTHR11240:SF51	RIBONUCLEASE 2	coord: 21..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G09110.1	Clc09G09110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding