Clc09G08580 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G08580
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSIL1
LocationClcChr09: 7215863 .. 7216998 (-)
RNA-Seq ExpressionClc09G08580
SyntenyClc09G08580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGGAGTTCCTCCTCAATCCACCGTATGGGGAGGGGCCATATCGGCCATATCTCTGGCTTGCTAGCATTTGTGCTATTGTTTGGGTGTTGTGGGGTGAGAGGAATAGCAGGTTGTTTAGGGGTATTGAGAGGGATGTTAGAGATATTTGGTCTTTTGTTCGGTTTCATGTTTTTCATTGGGCTTCGATTTCGAAGGTCTTTTGTAATTATTCTATTGATATGATTTTGTATAGTTGGAGTCCCTTCTTCTAGTGGGATTTCTCCTCTTTTTTGTAGGCTTGGTTTTTGGTATGCCCATGTATTCTTTCATTTTTTCTCAATGATAGTTGTTCTTATTAAAAAAAAAAAAAAAAAAAAAAAGAGATGTGGGATTGTAATTACAAAAAAAGAAGTGAATTTTCACCAAGAAAGAGATATATACAAAAGGTGATAAAAAACTGAGTGAATTTTGTTTCTCTATCTTTAAAGATACGATGATTCTATTCGATTCAGATCAGCGAAAAGTAAAACCGCTTGATAGTTGTAGCAGGACAAGATTCTCATCCAAAAAGATTGGGCAAAGTCACAAAAAACCATTATGTGCATACTGGTTTCACCACAATTGTGACAGAGAATACACCAACTTGGGGCAGACACGACCTAAGGAGCCTTTTTGATAAGAACGTCGGTCGTATTAATGCTACCATGACTGACCTCCCAAAGAAAGAATCAAATCTTTTTTGGGATGGTACCTCTCCCAACTTTTTTTTATAAAGAGTAGCATTCTGATTATTACCACATGATGCAAGGTGTTAGGTGAGAGGTTTGGTAGAGCAGTGAACGGACTTGTCAAGGTTCCATCTCCATGAATCATCCACCAAGGATCTATTAGGGGGCTTTCGCAAGGTGGATAAAATAGACCACTAAGAATCTCAGCTTCATTAAGATTGCGCCTCAAACCAAGGTCCCATGATTCATAATGATGTTTCCAGCAGGAAGTCATCTTCTTGCTGGAAAGACCAAATAATCTAGGAAAAACATTCATAAGGGGAGAAGTTCCCAAACGTGGTTTCACCATTGCAGATGACATTGACAATATTCTCATGAATGAGATCAATCCGTTTAGCTATGTATATCCATGGGCCTTTTGA

mRNA sequence

ATGATCAAGGAGTTCCTCCTCAATCCACCGTATGGGGAGGGGCCATATCGGCCATATCTCTGGCTTGCTAGCATTTGTGCTATTGTTTGGGTGTTGTGGGGTGAGAGGAATAGCAGGTTGTTTAGGGGTATTGAGAGGGATGTTAGAGATATTTGGTCTTTTGTTCGGTTTCATGTTTTTCATTGGGCTTCGATTTCGAAGCAGGAAGTCATCTTCTTGCTGGAAAGACCAAATAATCTAGGAAAAACATTCATAAGGGGAGAAGTTCCCAAACGTGGTTTCACCATTGCAGATGACATTGACAATATTCTCATGAATGAGATCAATCCGTTTAGCTATGTATATCCATGGGCCTTTTGA

Coding sequence (CDS)

ATGATCAAGGAGTTCCTCCTCAATCCACCGTATGGGGAGGGGCCATATCGGCCATATCTCTGGCTTGCTAGCATTTGTGCTATTGTTTGGGTGTTGTGGGGTGAGAGGAATAGCAGGTTGTTTAGGGGTATTGAGAGGGATGTTAGAGATATTTGGTCTTTTGTTCGGTTTCATGTTTTTCATTGGGCTTCGATTTCGAAGCAGGAAGTCATCTTCTTGCTGGAAAGACCAAATAATCTAGGAAAAACATTCATAAGGGGAGAAGTTCCCAAACGTGGTTTCACCATTGCAGATGACATTGACAATATTCTCATGAATGAGATCAATCCGTTTAGCTATGTATATCCATGGGCCTTTTGA

Protein sequence

MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVFHWASISKQEVIFLLERPNNLGKTFIRGEVPKRGFTIADDIDNILMNEINPFSYVYPWAF
Homology
[Close]
BLAST of Clc09G08580 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           M + F+L+PP+ E     +LWLA +CAI+W +WGERN R+FRG +RD+ +I S VRFHV 
Sbjct: 313 MTEGFILHPPFKE--KGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVS 372

Query: 61  HWASISK 68
            W S+SK
Sbjct: 373 LWTSVSK 377

[Close]
BLAST of Clc09G08580 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 8.3e-12
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           MI+EFLLN P GE     +LW A +CAI+WVLW E N R+F G+ER   +IW  +R+HV 
Sbjct: 90  MIEEFLLNLPCGE--RGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVS 149

Query: 61  HWASISK 68
            W SISK
Sbjct: 150 LWDSISK 154

[Close]
BLAST of Clc09G08580 vs. NCBI nr
Match: XP_031745951.1 (LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHV 60
           MIK +LLN  +GE     +LW ASI AI+WVLW ERNSR +RG +   + +WS VR H+
Sbjct: 238 MIKVYLLNLSFGEKD--RFLWCASISAILWVLWDERNSRFYRGFDNGNKGLWSLVRLHI 294

[Close]
BLAST of Clc09G08580 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 1  MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVR 57
          +I EFLL  P  E     +LW   +CA++W LWGERN+R+FRG+ER+  ++WS VR
Sbjct: 33 VIGEFLLRLPLREKGC--FLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]
BLAST of Clc09G08580 vs. NCBI nr
Match: XP_030483308.1 (uncharacterized protein LOC115699905 [Cannabis sativa])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0 

Query: 17  RPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVFHWASISK 68
           R YLW  ++ AI+WV+W ERN+R+F GIE  V D+W  VRF    W   +K
Sbjct: 208 RSYLWRTAVLAIIWVIWLERNNRIFEGIEASVEDLWEKVRFWTAVWVYKTK 258

[Close]
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.2e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           M + F+L+PP+ E     +LWLA +CAI+W +WGERN R+FRG +RD+ +I S VRFHV 
Sbjct: 313 MTEGFILHPPFKE--KGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVS 372

Query: 61  HWASISK 68
            W S+SK
Sbjct: 373 LWTSVSK 377

[Close]
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.0e-12
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           MI+EFLLN P GE     +LW A +CAI+WVLW E N R+F G+ER   +IW  +R+HV 
Sbjct: 90  MIEEFLLNLPCGE--RGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVS 149

Query: 61  HWASISK 68
            W SISK
Sbjct: 150 LWDSISK 154

[Close]
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 1  MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVR 57
          +I EFLL  P  E     +LW   +CA++W LWGERN+R+FRG+ER+  ++WS VR
Sbjct: 33 VIGEFLLRLPLREKGC--FLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: E5GB48 (SIL1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRG 44
           MI+EFLL+PP  +     +LWLA +CA+VW +WGERN R+F G
Sbjct: 94  MIEEFLLHPPSRDKGV--FLWLAEVCAVVWYIWGERNDRVFWG 134

[Close]
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A5D3BWW8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001950 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 23  ASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVFHWASISKQEVI 72
           A +  I+WVL GERN R+FR +ER+  D+WS + FHV  WAS+ K  +I
Sbjct: 186 AWVGGILWVLLGERNRRVFRSLEREPLDVWSLLCFHVSLWASVLKDFLI 234

The following BLAST results are available for this feature:
BLAST of Clc09G08580 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK19563.11.3e-1253.73uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa][more]
XP_016900613.18.3e-1255.22PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo][more]
XP_031745951.11.5e-0852.54LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransfer... [more]
TYK23653.17.3e-0850.00SIL1 [Cucumis melo var. makuwa][more]
XP_030483308.12.3e-0649.02uncharacterized protein LOC115699905 [Cannabis sativa][more]
BLAST of Clc09G08580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7T26.2e-1353.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DXB14.0e-1255.22uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=... [more]
A0A5D3DJ763.5e-0850.00SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1[more]
E5GB482.1e-0555.81SIL1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3BWW82.8e-0551.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G08580.1Clc09G08580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity