Clc09G08580 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G08580
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	SIL1
Location	ClcChr09: 7215863 .. 7216998 (-)
RNA-Seq Expression	Clc09G08580
Synteny	Clc09G08580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGGAGTTCCTCCTCAATCCACCGTATGGGGAGGGGCCATATCGGCCATATCTCTGGCTTGCTAGCATTTGTGCTATTGTTTGGGTGTTGTGGGGTGAGAGGAATAGCAGGTTGTTTAGGGGTATTGAGAGGGATGTTAGAGATATTTGGTCTTTTGTTCGGTTTCATGTTTTTCATTGGGCTTCGATTTCGAAGGTCTTTTGTAATTATTCTATTGATATGATTTTGTATAGTTGGAGTCCCTTCTTCTAGTGGGATTTCTCCTCTTTTTTGTAGGCTTGGTTTTTGGTATGCCCATGTATTCTTTCATTTTTTCTCAATGATAGTTGTTCTTATTAAAAAAAAAAAAAAAAAAAAAAAGAGATGTGGGATTGTAATTACAAAAAAAGAAGTGAATTTTCACCAAGAAAGAGATATATACAAAAGGTGATAAAAAACTGAGTGAATTTTGTTTCTCTATCTTTAAAGATACGATGATTCTATTCGATTCAGATCAGCGAAAAGTAAAACCGCTTGATAGTTGTAGCAGGACAAGATTCTCATCCAAAAAGATTGGGCAAAGTCACAAAAAACCATTATGTGCATACTGGTTTCACCACAATTGTGACAGAGAATACACCAACTTGGGGCAGACACGACCTAAGGAGCCTTTTTGATAAGAACGTCGGTCGTATTAATGCTACCATGACTGACCTCCCAAAGAAAGAATCAAATCTTTTTTGGGATGGTACCTCTCCCAACTTTTTTTTATAAAGAGTAGCATTCTGATTATTACCACATGATGCAAGGTGTTAGGTGAGAGGTTTGGTAGAGCAGTGAACGGACTTGTCAAGGTTCCATCTCCATGAATCATCCACCAAGGATCTATTAGGGGGCTTTCGCAAGGTGGATAAAATAGACCACTAAGAATCTCAGCTTCATTAAGATTGCGCCTCAAACCAAGGTCCCATGATTCATAATGATGTTTCCAGCAGGAAGTCATCTTCTTGCTGGAAAGACCAAATAATCTAGGAAAAACATTCATAAGGGGAGAAGTTCCCAAACGTGGTTTCACCATTGCAGATGACATTGACAATATTCTCATGAATGAGATCAATCCGTTTAGCTATGTATATCCATGGGCCTTTTGA

mRNA sequence

ATGATCAAGGAGTTCCTCCTCAATCCACCGTATGGGGAGGGGCCATATCGGCCATATCTCTGGCTTGCTAGCATTTGTGCTATTGTTTGGGTGTTGTGGGGTGAGAGGAATAGCAGGTTGTTTAGGGGTATTGAGAGGGATGTTAGAGATATTTGGTCTTTTGTTCGGTTTCATGTTTTTCATTGGGCTTCGATTTCGAAGCAGGAAGTCATCTTCTTGCTGGAAAGACCAAATAATCTAGGAAAAACATTCATAAGGGGAGAAGTTCCCAAACGTGGTTTCACCATTGCAGATGACATTGACAATATTCTCATGAATGAGATCAATCCGTTTAGCTATGTATATCCATGGGCCTTTTGA

Coding sequence (CDS)

ATGATCAAGGAGTTCCTCCTCAATCCACCGTATGGGGAGGGGCCATATCGGCCATATCTCTGGCTTGCTAGCATTTGTGCTATTGTTTGGGTGTTGTGGGGTGAGAGGAATAGCAGGTTGTTTAGGGGTATTGAGAGGGATGTTAGAGATATTTGGTCTTTTGTTCGGTTTCATGTTTTTCATTGGGCTTCGATTTCGAAGCAGGAAGTCATCTTCTTGCTGGAAAGACCAAATAATCTAGGAAAAACATTCATAAGGGGAGAAGTTCCCAAACGTGGTTTCACCATTGCAGATGACATTGACAATATTCTCATGAATGAGATCAATCCGTTTAGCTATGTATATCCATGGGCCTTTTGA

Protein sequence

MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVFHWASISKQEVIFLLERPNNLGKTFIRGEVPKRGFTIADDIDNILMNEINPFSYVYPWAF

Homology

[Close]

BLAST of Clc09G08580 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           M + F+L+PP+ E     +LWLA +CAI+W +WGERN R+FRG +RD+ +I S VRFHV 
Sbjct: 313 MTEGFILHPPFKE--KGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVS 372

Query: 61  HWASISK 68
            W S+SK
Sbjct: 373 LWTSVSK 377

[Close]

BLAST of Clc09G08580 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 8.3e-12
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           MI+EFLLN P GE     +LW A +CAI+WVLW E N R+F G+ER   +IW  +R+HV 
Sbjct: 90  MIEEFLLNLPCGE--RGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVS 149

Query: 61  HWASISK 68
            W SISK
Sbjct: 150 LWDSISK 154

[Close]

BLAST of Clc09G08580 vs. NCBI nr
Match: XP_031745951.1 (LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHV 60
           MIK +LLN  +GE     +LW ASI AI+WVLW ERNSR +RG +   + +WS VR H+
Sbjct: 238 MIKVYLLNLSFGEKD--RFLWCASISAILWVLWDERNSRFYRGFDNGNKGLWSLVRLHI 294

[Close]

BLAST of Clc09G08580 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1  MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVR 57
          +I EFLL  P  E     +LW   +CA++W LWGERN+R+FRG+ER+  ++WS VR
Sbjct: 33 VIGEFLLRLPLREKGC--FLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]

BLAST of Clc09G08580 vs. NCBI nr
Match: XP_030483308.1 (uncharacterized protein LOC115699905 [Cannabis sativa])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 17  RPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVFHWASISK 68
           R YLW  ++ AI+WV+W ERN+R+F GIE  V D+W  VRF    W   +K
Sbjct: 208 RSYLWRTAVLAIIWVIWLERNNRIFEGIEASVEDLWEKVRFWTAVWVYKTK 258

[Close]

BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.2e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           M + F+L+PP+ E     +LWLA +CAI+W +WGERN R+FRG +RD+ +I S VRFHV 
Sbjct: 313 MTEGFILHPPFKE--KGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVS 372

Query: 61  HWASISK 68
            W S+SK
Sbjct: 373 LWTSVSK 377

[Close]

BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.0e-12
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVF 60
           MI+EFLLN P GE     +LW A +CAI+WVLW E N R+F G+ER   +IW  +R+HV 
Sbjct: 90  MIEEFLLNLPCGE--RGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVS 149

Query: 61  HWASISK 68
            W SISK
Sbjct: 150 LWDSISK 154

[Close]

BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1  MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRGIERDVRDIWSFVR 57
          +I EFLL  P  E     +LW   +CA++W LWGERN+R+FRG+ER+  ++WS VR
Sbjct: 33 VIGEFLLRLPLREKGC--FLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]

BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: E5GB48 (SIL1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 1   MIKEFLLNPPYGEGPYRPYLWLASICAIVWVLWGERNSRLFRG 44
           MI+EFLL+PP  +     +LWLA +CA+VW +WGERN R+F G
Sbjct: 94  MIEEFLLHPPSRDKGV--FLWLAEVCAVVWYIWGERNDRVFWG 134

[Close]

BLAST of Clc09G08580 vs. ExPASy TrEMBL
Match: A0A5D3BWW8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001950 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 23  ASICAIVWVLWGERNSRLFRGIERDVRDIWSFVRFHVFHWASISKQEVI 72
           A +  I+WVL GERN R+FR +ER+  D+WS + FHV  WAS+ K  +I
Sbjct: 186 AWVGGILWVLLGERNRRVFRSLEREPLDVWSLLCFHVSLWASVLKDFLI 234

The following BLAST results are available for this feature:

BLAST of Clc09G08580 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19563.1	1.3e-12	53.73	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
XP_016900613.1	8.3e-12	55.22	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]
XP_031745951.1	1.5e-08	52.54	LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransfer...	[more]
TYK23653.1	7.3e-08	50.00	SIL1 [Cucumis melo var. makuwa]	[more]
XP_030483308.1	2.3e-06	49.02	uncharacterized protein LOC115699905 [Cannabis sativa]	[more]

BLAST of Clc09G08580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G08580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7T2	6.2e-13	53.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DXB1	4.0e-12	55.22	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A5D3DJ76	3.5e-08	50.00	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1	[more]
E5GB48	2.1e-05	55.81	SIL1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3BWW8	2.8e-05	51.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc09G08580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G08580.1	Clc09G08580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity