Clc09G08550 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G08550
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionGRAS family transcription factor
LocationClcChr09: 7198014 .. 7198858 (-)
RNA-Seq ExpressionClc09G08550
SyntenyClc09G08550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTTGAGCTCACTTCAAATGGCGTCTCCTTACGGTCAGTCGAGTGCGGAGCGTGTGGTACATACTTTGCAGCTGCCATGGCTAGTAGAGTCATAAACTCCATATTGGGGATTTGCTCTCCTTTACTCAACTACAAAAGCATAAACAATTCCTTCCAACTTTTCTACAATATTTCGCCATTCATCAAGTTTGCTCATTTGGCCTCAAACCAAACCATACTTGAGTCTCTCACACAATGTGACCTAATTCATATCATTGACCTTGACATCATGCTAGGCTTGCAATGGCCACCACTTTTGCAAGCTCTTGCCATGAGGATGGATAACAATCGCTCTCCCCACGTCAGGATCACTGCCGTGGGCACCACCATGGAGCTCCTACTCGACACAGGGAAGCGACTCTCTGACATTGCTCGACAACTTGGACTATCTTTTGAGTACAATCCCATTGCTGCAAAGGTAGGAAAAGATTGATGCATCAATGTTGAAACTCCGACGTAGTGAGACAGTAGTTGTGAACTGGGTTCGACATTGTCTTTACGATGGTATCGGAGCGTGATTGGAAAAACCATTGGATTAATTCAACAACTGGGGCCTAAAGTTTTCACGTTTGTTAGAGCAAGATATGTGCTATGGAGGAGCATTTCTAGATCGTTTGTTAGCTCTCTACATTACTTACTCAGTCCATTTTTGAGTCTCATGGAGCTTGTCTAAGAAGTGATGACAGTAATAGAAATCAAGTGGAGCACAACATTTTGTATAGGGAGATCAATAACATATTGGCAATTGGAGGGTCCTCAAGAAGTGGAGAGGAGAAGTTTAGGAATGGAGAAATGAACTAA

mRNA sequence

ATGCTTCTTGAGCTCACTTCAAATGGCGTCTCCTTACGGTCAGTCGAGTGCGGAGCGTGTGGTACATACTTTGCAGCTGCCATGGCTAGTAGAGTCATAAACTCCATATTGGGGATTTGCTCTCCTTTACTCAACTACAAAAGCATAAACAATTCCTTCCAACTTTTCTACAATATTTCGCCATTCATCAAGTTTGCTCATTTGGCCTCAAACCAAACCATACTTGAGTCTCTCACACAATGTGACCTAATTCATATCATTGACCTTGACATCATGCTAGGCTTGCAATGGCCACCACTTTTGCAAGCTCTTGCCATGAGGATGGATAACAATCGCTCTCCCCACGTCAGGATCACTGCCGTGGGCACCACCATGGAGCTCCTACTCGACACAGGGAAGCGACTCTCTGACATTGCTCGACAACTTGGACTATCTTTTGAGTACAATCCCATTGCTGCAAAGTCCATTTTTGAGTCTCATGGAGCTTGTCTAAGAAGTGATGACAGTAATAGAAATCAAGTGGAGCACAACATTTTGTATAGGGAGATCAATAACATATTGGCAATTGGAGGGTCCTCAAGAAGTGGAGAGGAGAAGTTTAGGAATGGAGAAATGAACTAA

Coding sequence (CDS)

ATGCTTCTTGAGCTCACTTCAAATGGCGTCTCCTTACGGTCAGTCGAGTGCGGAGCGTGTGGTACATACTTTGCAGCTGCCATGGCTAGTAGAGTCATAAACTCCATATTGGGGATTTGCTCTCCTTTACTCAACTACAAAAGCATAAACAATTCCTTCCAACTTTTCTACAATATTTCGCCATTCATCAAGTTTGCTCATTTGGCCTCAAACCAAACCATACTTGAGTCTCTCACACAATGTGACCTAATTCATATCATTGACCTTGACATCATGCTAGGCTTGCAATGGCCACCACTTTTGCAAGCTCTTGCCATGAGGATGGATAACAATCGCTCTCCCCACGTCAGGATCACTGCCGTGGGCACCACCATGGAGCTCCTACTCGACACAGGGAAGCGACTCTCTGACATTGCTCGACAACTTGGACTATCTTTTGAGTACAATCCCATTGCTGCAAAGTCCATTTTTGAGTCTCATGGAGCTTGTCTAAGAAGTGATGACAGTAATAGAAATCAAGTGGAGCACAACATTTTGTATAGGGAGATCAATAACATATTGGCAATTGGAGGGTCCTCAAGAAGTGGAGAGGAGAAGTTTAGGAATGGAGAAATGAACTAA

Protein sequence

MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNISPFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAKSIFESHGACLRSDDSNRNQVEHNILYREINNILAIGGSSRSGEEKFRNGEMN
Homology
BLAST of Clc09G08550 vs. NCBI nr
Match: KAA0042005.1 (protein SCARECROW-like [Cucumis melo var. makuwa] >TYK17941.1 protein SCARECROW-like [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-77
Identity = 169/274 (61.68%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 113 MLLELTQMASPYGQSSAERVVTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNVS 172

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILESL+ CD++HIIDLDIM GLQWPPLLQAL+MRMDN RS HVRITA
Sbjct: 173 PFIKFAHLASNQTILESLSHCDIVHIIDLDIMQGLQWPPLLQALSMRMDNGRSRHVRITA 232

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELLLDTGK+LSD+AR LGLSFEYNPIA K                          
Sbjct: 233 VGTTMELLLDTGKQLSDVARHLGLSFEYNPIAGKVGKIDVSMLKLRRNETVVMNWVRHCL 292

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 293 YDAIGADWKTIGLIQQVRPKVFAFVEQDMCYGGAFLDRFVSSLHYYCAIFDSLGACLRSD 352

BLAST of Clc09G08550 vs. NCBI nr
Match: XP_008447231.1 (PREDICTED: protein SCARECROW-like [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-77
Identity = 169/274 (61.68%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 149 MLLELTQMASPYGQSSAERVVTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNVS 208

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILESL+ CD++HIIDLDIM GLQWPPLLQAL+MRMDN RS HVRITA
Sbjct: 209 PFIKFAHLASNQTILESLSHCDIVHIIDLDIMQGLQWPPLLQALSMRMDNGRSRHVRITA 268

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELLLDTGK+LSD+AR LGLSFEYNPIA K                          
Sbjct: 269 VGTTMELLLDTGKQLSDVARHLGLSFEYNPIAGKVGKIDVSMLKLRRNEAVVMNWVRHCL 328

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 329 YDAIGADWKTIGLIQQVRPKVFAFVEQDMCYGGAFLDRFVSSLHYYCAIFDSLGACLRSD 388

BLAST of Clc09G08550 vs. NCBI nr
Match: XP_004150366.1 (protein SCARECROW [Cucumis sativus] >KGN44682.1 hypothetical protein Csa_016507 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 168/274 (61.31%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 113 MLLELTQMASPYGQSSAERVVTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNVS 172

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILESL+QCD++HIIDLDIM GLQWPPLLQAL+MRMDN  S HVRITA
Sbjct: 173 PFIKFAHLASNQTILESLSQCDIVHIIDLDIMQGLQWPPLLQALSMRMDNGCSRHVRITA 232

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELLLDTGK+LS++AR LGLSFEYNPIA K                          
Sbjct: 233 VGTTMELLLDTGKQLSNVARHLGLSFEYNPIAGKVGKIDVSMLKLRRNETVVVNWVRHCL 292

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 293 YDAIGADWKTIGLIQQVGPKVFAFVEQDMCYGGAFLDRFVSSLHYYSAIFDSLGACLRSD 352

BLAST of Clc09G08550 vs. NCBI nr
Match: XP_038896096.1 (protein SCARECROW-like [Benincasa hispida])

HSP 1 Score: 295.4 bits (755), Expect = 3.7e-76
Identity = 168/274 (61.31%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRV+NSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 113 MLLELTQMASPYGQSSAERVVTYFAAAMASRVVNSILGICSPLLNYKSINNSFQLFYNVS 172

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILE+L QCDLIHIIDLDIM GLQWP LLQAL+MRMDN+R  HVRITA
Sbjct: 173 PFIKFAHLASNQTILEALPQCDLIHIIDLDIMQGLQWPQLLQALSMRMDNSRCRHVRITA 232

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELL DTGK+LSD+A+QLGLSFEYNPIAAK                          
Sbjct: 233 VGTTMELLFDTGKQLSDVAQQLGLSFEYNPIAAKVGKIDVSMLKLRRGETVVVNWVRHCL 292

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 293 YDTIGADWKTIGLIQQAGPKVFTFVEQDMCYGGAFLDRFVSSLHYYSAIFDSLGACLRSD 352

BLAST of Clc09G08550 vs. NCBI nr
Match: XP_023513487.1 (protein SCARECROW-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 7.5e-69
Identity = 158/275 (57.45%), Postives = 175/275 (63.64%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAM+SRVINSILGICSPLL+YKSI+NSFQ+F N+S
Sbjct: 148 MLLELTQMASPYGQSSAERVVTYFAAAMSSRVINSILGICSPLLDYKSISNSFQIFNNVS 207

Query: 61  PFIKFAHLASNQTILESLTQC-DLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRIT 120
           P IKFAHLASNQTILESL+QC D IHIIDLDIM G+QWPPL QAL  +MD++RS HVRIT
Sbjct: 208 PLIKFAHLASNQTILESLSQCVDPIHIIDLDIMQGIQWPPLFQALTTKMDDSRSRHVRIT 267

Query: 121 AVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK------------------------- 180
           A+GTTMELLLDTGK+LS+IARQLGLSFEYNPIA K                         
Sbjct: 268 AMGTTMELLLDTGKQLSNIARQLGLSFEYNPIATKVGKVDVSMVKLRQGETVVVNWVRHC 327

Query: 181 ------------------------------------------------SIFESHGACLRS 202
                                                           +IF+S GACL S
Sbjct: 328 LYDATGSDWKTLGLIQQLGPKVFTFVEQDMCHGGSYLDRFVSSLHYYSAIFDSLGACLSS 387

BLAST of Clc09G08550 vs. ExPASy Swiss-Prot
Match: Q2Z2E9 (Protein SCARECROW OS=Ipomoea nil OX=35883 GN=SCR PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-33
Identity = 94/260 (36.15%), Postives = 126/260 (48.46%), Query Frame = 0

Query: 23  YFAAAMASRVINSILGICS-------PLLNYKSINNSFQLFYNISPFIKFAHLASNQTIL 82
           YF+ AM++R++NS LGI +       PL   + + ++FQ+F  ISPF+KF+H  +NQ I 
Sbjct: 460 YFSEAMSARLVNSCLGIYASAPLNALPLSLNQKMASAFQVFNGISPFVKFSHFTANQAIQ 519

Query: 83  ESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVGTTMELLLDTGKRL 142
           E+  + D +HIIDLDIM GLQWP L   LA R      P VR+T +GT+ME L  TGKRL
Sbjct: 520 EAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGG--PPLVRLTGLGTSMEALEATGKRL 579

Query: 143 SDIARQLGLSFEYNPIAAK----------------------------------------- 202
           SD A++LGL FE+ P+A K                                         
Sbjct: 580 SDFAQKLGLPFEFFPVADKVGNLDPQRLNVNKREAVAVHWLQHSLYDVTGSDTNTLWLLQ 639

BLAST of Clc09G08550 vs. ExPASy Swiss-Prot
Match: Q9M384 (Protein SCARECROW OS=Arabidopsis thaliana OX=3702 GN=SCR PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30
Identity = 97/286 (33.92%), Postives = 133/286 (46.50%), Query Frame = 0

Query: 1   MLLEL----TSNGVSLRSVECGACGTYFAAAMASRVINSILGICS-------PLLNYKSI 60
           +LLE+    T  G S + V       YF+ AM++R++NS LGI +       P  +   +
Sbjct: 312 LLLEISQLSTPYGTSAQRV-----AAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKM 371

Query: 61  NNSFQLFYNISPFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMD 120
            ++FQ+F  ISP +KF+H  +NQ I E+  + D +HIIDLDIM GLQWP L   LA R  
Sbjct: 372 VSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPG 431

Query: 121 NNRSPHVRITAVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK--------------- 180
               PHVR+T +GT+ME L  TGKRLSD A +LGL FE+ P+A K               
Sbjct: 432 G--PPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKRE 491

Query: 181 ----------------------------------------------------------SI 203
                                                                     ++
Sbjct: 492 AVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSAL 551

BLAST of Clc09G08550 vs. ExPASy Swiss-Prot
Match: Q9AVK4 (Protein SCARECROW OS=Pisum sativum OX=3888 GN=SCR PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 96/285 (33.68%), Postives = 135/285 (47.37%), Query Frame = 0

Query: 1   MLLEL----TSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPL------LNYKSIN 60
           MLLE+    T  G S + V       YF+ A+++R+++S LGI + L       + + + 
Sbjct: 469 MLLEISQLSTPFGTSAQRV-----AAYFSEAISARLVSSCLGIYATLPVSSHTPHNQKVA 528

Query: 61  NSFQLFYNISPFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDN 120
           ++FQ+F  ISPF+KF+H  +NQ I E+  + + +HIIDLDIM GLQWP L   LA R   
Sbjct: 529 SAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGG 588

Query: 121 NRSPHVRITAVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK---------------- 180
              P+VR+T +GT+ME L  TGKRLSD A +LGL FE+ P+A K                
Sbjct: 589 --PPYVRLTGLGTSMETLEATGKRLSDFANKLGLPFEFFPVAEKVGNIDVEKLNVSKSEA 648

Query: 181 ---------------------------------------------------------SIF 203
                                                                    ++F
Sbjct: 649 VAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALF 708

BLAST of Clc09G08550 vs. ExPASy Swiss-Prot
Match: A2ZAX5 (Protein SCARECROW 1 OS=Oryza sativa subsp. indica OX=39946 GN=SCR1 PE=3 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-29
Identity = 87/259 (33.59%), Postives = 120/259 (46.33%), Query Frame = 0

Query: 23  YFAAAMASRVINSILGICSPLLN--------YKSINNSFQLFYNISPFIKFAHLASNQTI 82
           YFA AM++R+++S LG+ +PL N        +  +  +FQ+F  ISPF+KF+H  +NQ I
Sbjct: 334 YFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAI 393

Query: 83  LESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVGTTMELLLDTGKR 142
            E+  + + +HIIDLDIM GLQWP L   LA R      P VR+T +G +ME L  TGKR
Sbjct: 394 QEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGG--PPRVRLTGLGASMEALEATGKR 453

Query: 143 LSDIARQLGLSFEYNPIAAK---------------------------------------- 201
           LSD A  LGL FE+ P+A K                                        
Sbjct: 454 LSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLI 513

BLAST of Clc09G08550 vs. ExPASy Swiss-Prot
Match: Q2RB59 (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-29
Identity = 87/259 (33.59%), Postives = 120/259 (46.33%), Query Frame = 0

Query: 23  YFAAAMASRVINSILGICSPLLN--------YKSINNSFQLFYNISPFIKFAHLASNQTI 82
           YFA AM++R+++S LG+ +PL N        +  +  +FQ+F  ISPF+KF+H  +NQ I
Sbjct: 326 YFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAI 385

Query: 83  LESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVGTTMELLLDTGKR 142
            E+  + + +HIIDLDIM GLQWP L   LA R      P VR+T +G +ME L  TGKR
Sbjct: 386 QEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGG--PPRVRLTGLGASMEALEATGKR 445

Query: 143 LSDIARQLGLSFEYNPIAAK---------------------------------------- 201
           LSD A  LGL FE+ P+A K                                        
Sbjct: 446 LSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLI 505

BLAST of Clc09G08550 vs. ExPASy TrEMBL
Match: A0A5D3D120 (Protein SCARECROW-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002380 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 169/274 (61.68%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 113 MLLELTQMASPYGQSSAERVVTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNVS 172

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILESL+ CD++HIIDLDIM GLQWPPLLQAL+MRMDN RS HVRITA
Sbjct: 173 PFIKFAHLASNQTILESLSHCDIVHIIDLDIMQGLQWPPLLQALSMRMDNGRSRHVRITA 232

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELLLDTGK+LSD+AR LGLSFEYNPIA K                          
Sbjct: 233 VGTTMELLLDTGKQLSDVARHLGLSFEYNPIAGKVGKIDVSMLKLRRNETVVMNWVRHCL 292

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 293 YDAIGADWKTIGLIQQVRPKVFAFVEQDMCYGGAFLDRFVSSLHYYCAIFDSLGACLRSD 352

BLAST of Clc09G08550 vs. ExPASy TrEMBL
Match: A0A1S3BGY8 (protein SCARECROW-like OS=Cucumis melo OX=3656 GN=LOC103489724 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 169/274 (61.68%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 149 MLLELTQMASPYGQSSAERVVTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNVS 208

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILESL+ CD++HIIDLDIM GLQWPPLLQAL+MRMDN RS HVRITA
Sbjct: 209 PFIKFAHLASNQTILESLSHCDIVHIIDLDIMQGLQWPPLLQALSMRMDNGRSRHVRITA 268

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELLLDTGK+LSD+AR LGLSFEYNPIA K                          
Sbjct: 269 VGTTMELLLDTGKQLSDVARHLGLSFEYNPIAGKVGKIDVSMLKLRRNEAVVMNWVRHCL 328

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 329 YDAIGADWKTIGLIQQVRPKVFAFVEQDMCYGGAFLDRFVSSLHYYCAIFDSLGACLRSD 388

BLAST of Clc09G08550 vs. ExPASy TrEMBL
Match: A0A0A0K8I4 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372280 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 168/274 (61.31%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYN+S
Sbjct: 113 MLLELTQMASPYGQSSAERVVTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNVS 172

Query: 61  PFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITA 120
           PFIKFAHLASNQTILESL+QCD++HIIDLDIM GLQWPPLLQAL+MRMDN  S HVRITA
Sbjct: 173 PFIKFAHLASNQTILESLSQCDIVHIIDLDIMQGLQWPPLLQALSMRMDNGCSRHVRITA 232

Query: 121 VGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK-------------------------- 180
           VGTTMELLLDTGK+LS++AR LGLSFEYNPIA K                          
Sbjct: 233 VGTTMELLLDTGKQLSNVARHLGLSFEYNPIAGKVGKIDVSMLKLRRNETVVVNWVRHCL 292

Query: 181 -----------------------------------------------SIFESHGACLRSD 202
                                                          +IF+S GACLRSD
Sbjct: 293 YDAIGADWKTIGLIQQVGPKVFAFVEQDMCYGGAFLDRFVSSLHYYSAIFDSLGACLRSD 352

BLAST of Clc09G08550 vs. ExPASy TrEMBL
Match: A0A6J1KRC1 (protein SCARECROW-like OS=Cucurbita maxima OX=3661 GN=LOC111497974 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.1e-68
Identity = 156/275 (56.73%), Postives = 175/275 (63.64%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAM+SRVINSILGICSPLL+YKSI+NSFQ+F N+S
Sbjct: 177 MLLELTQMASPYGQSSAERVVTYFAAAMSSRVINSILGICSPLLDYKSISNSFQIFNNVS 236

Query: 61  PFIKFAHLASNQTILESLTQC-DLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRIT 120
           P +KFAHLASNQTILESL+QC D IHIIDLDIM G+QWPPL QAL  +MD++RS HVRIT
Sbjct: 237 PLLKFAHLASNQTILESLSQCVDPIHIIDLDIMQGIQWPPLFQALTTKMDDSRSRHVRIT 296

Query: 121 AVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK------------------------- 180
           A+GTTMELLLDTGK+LS+IARQLG+SFEYNPIA K                         
Sbjct: 297 AMGTTMELLLDTGKQLSNIARQLGISFEYNPIATKVGKVDISMVKLRQGETVVVNWVRHC 356

Query: 181 ------------------------------------------------SIFESHGACLRS 202
                                                           +IF+S GACL S
Sbjct: 357 LYDATGDDWKTLGLIQQLGPKIFTFVEQNMCHGGSYLDRFVSSLHYYSAIFDSLGACLSS 416

BLAST of Clc09G08550 vs. ExPASy TrEMBL
Match: A0A6J1H5L3 (protein SCARECROW-like OS=Cucurbita moschata OX=3662 GN=LOC111460696 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.5e-67
Identity = 156/275 (56.73%), Postives = 173/275 (62.91%), Query Frame = 0

Query: 1   MLLELTSNGVSLRSVECGACGTYFAAAMASRVINSILGICSPLLNYKSINNSFQLFYNIS 60
           MLLELT               TYFAAAM+SRVINSILGICSPLL+YKSI+NSFQ+F N+S
Sbjct: 177 MLLELTQMASPYGQSSAERVVTYFAAAMSSRVINSILGICSPLLDYKSISNSFQIFNNVS 236

Query: 61  PFIKFAHLASNQTILESLTQC-DLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRIT 120
           P IKFAHLASNQTILESL+QC D IHIIDLDIM G+QWPPL QAL  +MD++ S HVRIT
Sbjct: 237 PLIKFAHLASNQTILESLSQCVDPIHIIDLDIMQGMQWPPLFQALTTKMDDSCSRHVRIT 296

Query: 121 AVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK------------------------- 180
           A+GTTMELLLDTGK+LS+IARQLGLSFEYNPIA K                         
Sbjct: 297 AMGTTMELLLDTGKQLSNIARQLGLSFEYNPIATKVGKVDISMVKLRQGEMVVVNWVQHC 356

Query: 181 ------------------------------------------------SIFESHGACLRS 202
                                                           +IF+S GACL S
Sbjct: 357 LYDATGSDWKTLGLIQQLGPKVFTFVEQDMCHGGSYLDRFVSSLHYYSAIFDSLGACLSS 416

BLAST of Clc09G08550 vs. TAIR 10
Match: AT3G54220.1 (GRAS family transcription factor )

HSP 1 Score: 134.8 bits (338), Expect = 7.8e-32
Identity = 97/286 (33.92%), Postives = 133/286 (46.50%), Query Frame = 0

Query: 1   MLLEL----TSNGVSLRSVECGACGTYFAAAMASRVINSILGICS-------PLLNYKSI 60
           +LLE+    T  G S + V       YF+ AM++R++NS LGI +       P  +   +
Sbjct: 312 LLLEISQLSTPYGTSAQRV-----AAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKM 371

Query: 61  NNSFQLFYNISPFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMD 120
            ++FQ+F  ISP +KF+H  +NQ I E+  + D +HIIDLDIM GLQWP L   LA R  
Sbjct: 372 VSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPG 431

Query: 121 NNRSPHVRITAVGTTMELLLDTGKRLSDIARQLGLSFEYNPIAAK--------------- 180
               PHVR+T +GT+ME L  TGKRLSD A +LGL FE+ P+A K               
Sbjct: 432 G--PPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKRE 491

Query: 181 ----------------------------------------------------------SI 203
                                                                     ++
Sbjct: 492 AVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSAL 551

BLAST of Clc09G08550 vs. TAIR 10
Match: AT5G41920.1 (GRAS family transcription factor )

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-25
Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 0

Query: 23  YFAAAMASRVINSIL-GICSPL-------LNYKSINNSFQLFYNISPFIKFAHLASNQTI 82
           YFA A+ +RVI+S L G CSPL       +  + I ++ Q + ++SP IKF+H  +NQ I
Sbjct: 83  YFAQALQTRVISSYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAI 142

Query: 83  LESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVGTTMELLLDTGKR 142
            ++L   D +HIIDLD+M GLQWP L   LA R    RS  +RIT  G++ +LL  TG+R
Sbjct: 143 FQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRS--IRITGFGSSSDLLASTGRR 202

Query: 143 LSDIARQLGLSFEYNPI 152
           L+D A  L L FE++PI
Sbjct: 203 LADFASSLNLPFEFHPI 217

BLAST of Clc09G08550 vs. TAIR 10
Match: AT3G03450.1 (RGA-like 2 )

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-19
Identity = 62/197 (31.47%), Postives = 103/197 (52.28%), Query Frame = 0

Query: 11  SLRSVECGACG---TYFAAAMASRVINSILG---ICSPLLNYKSINNSFQ-----LFYNI 70
           +L   + GA G   TYFA A+A R+         +C+      ++N SF+      FY  
Sbjct: 208 TLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCA------AVNPSFEEVLEMHFYES 267

Query: 71  SPFIKFAHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRIT 130
            P++KFAH  +NQ ILE++T    +H+IDL +  G+QWP L+QALA+R      P  R+T
Sbjct: 268 CPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGG--PPSFRLT 327

Query: 131 AVG----TTMELLLDTGKRLSDIARQLGLSFEYNPIAAKSIFESHGACLRSDDSNRNQVE 190
            +G       + L   G +L+  A+ +G+ FE+  +AA+S+ +       +   +   V 
Sbjct: 328 GIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVV 387

Query: 191 HNILYREINNILAIGGS 193
           +++   E++ +LA  GS
Sbjct: 388 NSVF--ELHRLLARSGS 394

BLAST of Clc09G08550 vs. TAIR 10
Match: AT5G17490.1 (RGA-like protein 3 )

HSP 1 Score: 88.2 bits (217), Expect = 8.4e-18
Identity = 59/189 (31.22%), Postives = 103/189 (54.50%), Query Frame = 0

Query: 12  LRSVECGACG---TYFAAAMASRV--INSILGICSPLLNYKSINNSFQL-FYNISPFIKF 71
           L + + GA G   TYFA A+A R+  I+       P     S     Q+ FY+  P++KF
Sbjct: 186 LAASQAGAMGKVATYFAEALARRIYRIHPSAAAIDP-----SFEEILQMNFYDSCPYLKF 245

Query: 72  AHLASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVG--T 131
           AH  +NQ ILE++T   ++H+IDL +  G+QWP L+QALA+R      P  R+T VG  +
Sbjct: 246 AHFTANQAILEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGG--PPSFRLTGVGNPS 305

Query: 132 TMELLLDTGKRLSDIARQLGLSFEYNPIAAKSIFESHGACLRSDDSNRNQVEHNILYREI 191
             E + + G +L+ +A+ +G+ F++N +  + + +       +   +   V +++   E+
Sbjct: 306 NREGIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVF--EL 365

Query: 192 NNILAIGGS 193
           + +L+  GS
Sbjct: 366 HPVLSQPGS 365

BLAST of Clc09G08550 vs. TAIR 10
Match: AT1G66350.1 (RGA-like 1 )

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 0

Query: 12  LRSVECGA---CGTYFAAAMASRVINSILGICSPLLNYKSINNSFQL-FYNISPFIKFAH 71
           L S + GA     TYFA  +A R+          L    S +++ Q+ FY   P++KFAH
Sbjct: 181 LASSQAGAMRKVATYFAEGLARRIYRIYPRDDVAL---SSFSDTLQIHFYESCPYLKFAH 240

Query: 72  LASNQTILESLTQCDLIHIIDLDIMLGLQWPPLLQALAMRMDNNRSPHVRITAVGTTMEL 131
             +NQ ILE     + +H+IDL +  GLQWP L+QALA+R   N  P  R+T +G ++  
Sbjct: 241 FTANQAILEVFATAEKVHVIDLGLNHGLQWPALIQALALR--PNGPPDFRLTGIGYSLTD 300

Query: 132 LLDTGKRLSDIARQLGLSFEYNPIAAKSI 157
           + + G +L  +A  +G++FE+  IA  ++
Sbjct: 301 IQEVGWKLGQLASTIGVNFEFKSIALNNL 324

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042005.13.4e-7761.68protein SCARECROW-like [Cucumis melo var. makuwa] >TYK17941.1 protein SCARECROW-... [more]
XP_008447231.13.4e-7761.68PREDICTED: protein SCARECROW-like [Cucumis melo][more]
XP_004150366.12.9e-7661.31protein SCARECROW [Cucumis sativus] >KGN44682.1 hypothetical protein Csa_016507 ... [more]
XP_038896096.13.7e-7661.31protein SCARECROW-like [Benincasa hispida][more]
XP_023513487.17.5e-6957.45protein SCARECROW-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q2Z2E93.1e-3336.15Protein SCARECROW OS=Ipomoea nil OX=35883 GN=SCR PE=1 SV=1[more]
Q9M3841.1e-3033.92Protein SCARECROW OS=Arabidopsis thaliana OX=3702 GN=SCR PE=1 SV=1[more]
Q9AVK41.4e-3033.68Protein SCARECROW OS=Pisum sativum OX=3888 GN=SCR PE=2 SV=1[more]
A2ZAX56.1e-2933.59Protein SCARECROW 1 OS=Oryza sativa subsp. indica OX=39946 GN=SCR1 PE=3 SV=2[more]
Q2RB596.1e-2933.59Protein SCARECROW 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3D1201.6e-7761.68Protein SCARECROW-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3... [more]
A0A1S3BGY81.6e-7761.68protein SCARECROW-like OS=Cucumis melo OX=3656 GN=LOC103489724 PE=3 SV=1[more]
A0A0A0K8I41.4e-7661.31GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372280 PE=3 S... [more]
A0A6J1KRC11.1e-6856.73protein SCARECROW-like OS=Cucurbita maxima OX=3661 GN=LOC111497974 PE=3 SV=1[more]
A0A6J1H5L31.5e-6756.73protein SCARECROW-like OS=Cucurbita moschata OX=3662 GN=LOC111460696 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G54220.17.8e-3233.92GRAS family transcription factor [more]
AT5G41920.15.4e-2545.99GRAS family transcription factor [more]
AT3G03450.12.6e-1931.47RGA-like 2 [more]
AT5G17490.18.4e-1831.22RGA-like protein 3 [more]
AT1G66350.11.1e-1735.57RGA-like 1 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005202Transcription factor GRASPFAMPF03514GRAScoord: 21..154
e-value: 1.0E-38
score: 133.3
IPR005202Transcription factor GRASPANTHERPTHR31636OSJNBA0084A10.13 PROTEIN-RELATEDcoord: 155..202
IPR005202Transcription factor GRASPANTHERPTHR31636OSJNBA0084A10.13 PROTEIN-RELATEDcoord: 1..154
IPR005202Transcription factor GRASPROSITEPS50985GRAScoord: 1..206
score: 33.784317
NoneNo IPR availablePANTHERPTHR31636:SF22OS05G0485400 PROTEINcoord: 155..202
NoneNo IPR availablePANTHERPTHR31636:SF22OS05G0485400 PROTEINcoord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G08550.1Clc09G08550.1mRNA