Clc09G08430 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G08430
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 7056224 .. 7056433 (-)
RNA-Seq ExpressionClc09G08430
SyntenyClc09G08430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGCGCGGCGGCGATAAGAACTCGCGGATCATTTTTGCCCTAAAGGTGGTGCTTCTGCTTCTGGCTGCGATGGCGATGGCGAGGCCGATTCGAGACTCCGGCGGTGAGGTGGTCCGGCCACAGGATAGAGCGCCGGTTCCGCCGTCTGGCCGGAATCCTTGCTCTCACGTTCATTTGCCTGGCGATGGAAGGCATTGCCTTTGA

mRNA sequence

ATGGCGATGCGCGGCGGCGATAAGAACTCGCGGATCATTTTTGCCCTAAAGGTGGTGCTTCTGCTTCTGGCTGCGATGGCGATGGCGAGGCCGATTCGAGACTCCGGCGGTGAGGTGGTCCGGCCACAGGATAGAGCGCCGGTTCCGCCGTCTGGCCGGAATCCTTGCTCTCACGTTCATTTGCCTGGCGATGGAAGGCATTGCCTTTGA

Coding sequence (CDS)

ATGGCGATGCGCGGCGGCGATAAGAACTCGCGGATCATTTTTGCCCTAAAGGTGGTGCTTCTGCTTCTGGCTGCGATGGCGATGGCGAGGCCGATTCGAGACTCCGGCGGTGAGGTGGTCCGGCCACAGGATAGAGCGCCGGTTCCGCCGTCTGGCCGGAATCCTTGCTCTCACGTTCATTTGCCTGGCGATGGAAGGCATTGCCTTTGA

Protein sequence

MAMRGGDKNSRIIFALKVVLLLLAAMAMARPIRDSGGEVVRPQDRAPVPPSGRNPCSHVHLPGDGRHCL
Homology
[Close]
BLAST of Clc09G08430 vs. NCBI nr
Match: KAG6576035.1 (hypothetical protein SDJN03_26674, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 49/74 (66.22%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 3   MRGGDKNSRIIFALKVVLLLLAAM-------AMARPIRDSGGEVVRPQDRAPVPPSGRNP 62
           MRGGDK S + FA+  VLLLL A+         ARPIRDS GE +RPQ RAPVPPSGRNP
Sbjct: 50  MRGGDKKSGLKFAVMAVLLLLIAIEEAGVATVTARPIRDSSGEALRPQYRAPVPPSGRNP 109

Query: 63  CSHVHLPGDGRHCL 70
           CSH  LP DGRHCL
Sbjct: 110 CSHFSLPSDGRHCL 123

[Close]
BLAST of Clc09G08430 vs. NCBI nr
Match: KGN44699.1 (hypothetical protein Csa_016711 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 3  MRGGDKNSRIIFALKVVLLLLA--AMAMARPIRDSGGEVVRPQDRAPVPPSGRNPCSHVH 62
          MR G KNSRI+FAL   LLLL   A AMARPI DS   + RP    P+PPSGRNPCSHV 
Sbjct: 33 MRRG-KNSRIVFALIAGLLLLVGIATAMARPIHDSAAPLRRP----PIPPSGRNPCSHVP 92

Query: 63 LPGDGRHCL 70
          LPGDGRHCL
Sbjct: 93 LPGDGRHCL 96

[Close]
BLAST of Clc09G08430 vs. ExPASy TrEMBL
Match: A0A0A0K702 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372930 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.0e-13
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 3  MRGGDKNSRIIFALKVVLLLLA--AMAMARPIRDSGGEVVRPQDRAPVPPSGRNPCSHVH 62
          MR G KNSRI+FAL   LLLL   A AMARPI DS   + RP    P+PPSGRNPCSHV 
Sbjct: 33 MRRG-KNSRIVFALIAGLLLLVGIATAMARPIHDSAAPLRRP----PIPPSGRNPCSHVP 92

Query: 63 LPGDGRHCL 70
          LPGDGRHCL
Sbjct: 93 LPGDGRHCL 96

The following BLAST results are available for this feature:
BLAST of Clc09G08430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576035.11.5e-1666.22hypothetical protein SDJN03_26674, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN44699.11.7e-1268.12hypothetical protein Csa_016711 [Cucumis sativus][more]
BLAST of Clc09G08430 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G08430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7028.0e-1368.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372930 PE=4 SV=1[more]
BLAST of Clc09G08430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G08430.1Clc09G08430.1mRNA