Clc09G08400 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G08400
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LOB domain-containing protein
Location	ClcChr09: 7003117 .. 7004170 (-)
RNA-Seq Expression	Clc09G08400
Synteny	Clc09G08400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCTCTCACCATTTTTCTTGTTAATAATTGCTACAAAGAGTCCATCAATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTAATACGTAAATTAAATTATCATAACTTATCGACTTAAGACTCTAGATTCGATTCGATGATAATTCATCATATTTTAAAAGATAAGTAAAATGATCAAACTTATTTGAATTCATAAGCTTAAATTTTCGAGTTTCTGTTCGTTTCTTTCAAAACCCTAATTTTCGAAATCGATTTTGATGATTATTTTAATGGTTGGGAAAATGGTAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAAGAGATTATTGTGAATCGTCCGGTCTCTTCCTTCGATGTTTTCAGATCAACGGCAAATAATAAGATCGAAGTATGGGTGTCTTTTTAGATAATCTGAATTTATTTTTACTTTATTTTATTTTCTGAATTTTCTTTTTTTGTTGTGTCTGTGCTCATGTGTGATTATAATGTGTAAAATTAAATTAAATAAGATAAAAGAACCCTAAATGTTGATAAGTATATATCAATGGGGAACCCTAAG

mRNA sequence

ATTTCTCTCACCATTTTTCTTGTTAATAATTGCTACAAAGAGTCCATCAATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAAGAGATTATTGTGAATCGTCCGGTCTCTTCCTTCGATGTTTTCAGATCAACGGCAAATAATAAGATCGAAGTATGGGTGTCTTTTTAGATAATCTGAATTTATTTTTACTTTATTTTATTTTCTGAATTTTCTTTTTTTGTTGTGTCTGTGCTCATGTGTGATTATAATGTGTAAAATTAAATTAAATAAGATAAAAGAACCCTAAATGTTGATAAGTATATATCAATGGGGAACCCTAAG

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGDFCC

Homology

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BLAST of Clc09G08400 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 345.1 bits (884), Expect = 3.7e-91
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS SSPPCGACKFLRRKCVNGCIFAP+FRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-SSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRC+AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN
Sbjct: 61  LPVSHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAG 180
           YTTRNPIELPYEKS FYSDDPLLDLQ+WLLAESCSAAAPEFE AAVPY EMSVVDSNLAG
Sbjct: 121 YTTRNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAG 180

Query: 181 DFC 184
           +FC
Sbjct: 181 NFC 182

[Close]

BLAST of Clc09G08400 vs. NCBI nr
Match: XP_004150342.1 (LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_015971 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 2.9e-88
Identity = 172/185 (92.97%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS S+PPCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-STPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRNP EL YEKS F YSDDP LDLQSWLLAESCSA APE E AAVPYFEMSVVDS LA
Sbjct: 121 YTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of Clc09G08400 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-87
Identity = 170/185 (91.89%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS SS PCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-SSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRN  ELPYEKS F YSDDP LDLQSWLL ESC+AAAPEFE AAVPYFEMSV+DS LA
Sbjct: 121 YTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of Clc09G08400 vs. NCBI nr
Match: KAA0042058.1 (LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB domain-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-87
Identity = 169/185 (91.35%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS SS PCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-SSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSS-FYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRNP ELPYEKS  +YSDDP LDLQSWLLAESC+ AAPEFE AA+PYFEMSVV+S LA
Sbjct: 121 YTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of Clc09G08400 vs. NCBI nr
Match: XP_023004822.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 3.8e-80
Identity = 153/183 (83.61%), Postives = 161/183 (87.98%), Query Frame = 0


Query: 2   AASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHL 61
           A+SSSS SSPPCGACKFLRRKCVNGCIFAPYFRH+LGAS FSA+HKVFGASNASKLLAHL
Sbjct: 3   ASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 62

Query: 62  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY 121
           PVSHR +AAVTISYEAQARLQDPIYGC+S IFALQ QVMNLRAQVAYLREQAAQILLN Y
Sbjct: 63  PVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGY 122

Query: 122 TTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGD 181
            TRNP EL Y  S  YSD+ LLDLQ+WLL ESCS AAPEFE  A PY EM + DSNLAGD
Sbjct: 123 ITRNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGD 182

Query: 182 FCC 185
           FCC
Sbjct: 183 FCC 185

[Close]

BLAST of Clc09G08400 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-47
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SSSS S  PCGACKFLRRKC  GC+FAPYF HE GAS F+AIHKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ--ILLNNY 123
           S RCEAA+TISYEAQARLQDPIYGCVSHIFALQQQV+NL+A++  L++QAAQ  I  ++ 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 124 TTRNPIELPYEKSSFYSD 140
           T+ NP       +S+Y D
Sbjct: 123 TSENP-------NSYYGD 133

[Close]

BLAST of Clc09G08400 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.5e-42
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 12  PCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAV 71
           PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLP++ R EAAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 72  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 116
           TISYEAQARL+DPIYGCV+HIFALQQQVM L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of Clc09G08400 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.1e-40
Identity = 79/110 (71.82%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRR+CV GC+FAPYF HE GAS F+AIH+VFGASNASKLL+HLP+  R E
Sbjct: 4   SGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRRE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 119
           AA TI YEAQAR QDPIYGCVSHIF+LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 64  AATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of Clc09G08400 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 6.8e-40
Identity = 88/163 (53.99%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SS      PCGACKFLRRKCV GCIFAPYF  E G++ F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTT 123
             R +A VTI YEAQAR++DPIYGCV+HIFALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 124 RNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAV 167
           R P  +P  +  F++  P L +    L  S S     ++ A++
Sbjct: 149 R-PQPMPQPQPLFFTPPPPLAITD--LPASVSPLPSTYDLASI 188

[Close]

BLAST of Clc09G08400 vs. ExPASy Swiss-Prot
Match: Q9SJW5 (LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.4e-37
Identity = 73/104 (70.19%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  PCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAV 71
           PCG CKFLRRKCV GC+FAPYF +E G+S F+AIHKVFGASN SKL++HLP   RC+A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 72  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 116
           TISYEA +RL DPIYGCVS IF+LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of Clc09G08400 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 172/185 (92.97%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS S+PPCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-STPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRNP EL YEKS F YSDDP LDLQSWLLAESCSA APE E AAVPYFEMSVVDS LA
Sbjct: 121 YTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of Clc09G08400 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 169/185 (91.35%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS SS PCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-SSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSS-FYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRNP ELPYEKS  +YSDDP LDLQSWLLAESC+ AAPEFE AA+PYFEMSVV+S LA
Sbjct: 121 YTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of Clc09G08400 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 170/185 (91.89%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS SS PCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSS-SSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRN  ELPYEKS F YSDDP LDLQSWLL ESC+AAAPEFE AAVPYFEMSV+DS LA
Sbjct: 121 YTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of Clc09G08400 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 153/183 (83.61%), Postives = 161/183 (87.98%), Query Frame = 0


Query: 2   AASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHL 61
           A+SSSS SSPPCGACKFLRRKCVNGCIFAPYFRH+LGAS FSA+HKVFGASNASKLLAHL
Sbjct: 3   ASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 62

Query: 62  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY 121
           PVSHR +AAVTISYEAQARLQDPIYGC+S IFALQ QVMNLRAQVAYLREQAAQILLN Y
Sbjct: 63  PVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGY 122

Query: 122 TTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGD 181
            TRNP EL Y  S  YSD+ LLDLQ+WLL ESCS AAPEFE  A PY EM + DSNLAGD
Sbjct: 123 ITRNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGD 182

Query: 182 FCC 185
           FCC
Sbjct: 183 FCC 185

[Close]

BLAST of Clc09G08400 vs. ExPASy TrEMBL
Match: A0A6J1DSE8 (LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC111023473 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 157/184 (85.33%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAAS+SS SS PCGACKFLRRKCVNGCIFAPYFRHELG S FSA+HKVFGASNASKLLAH
Sbjct: 1   MAASASS-SSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAA+TISYEAQARLQDPIYGCVSHIF LQQQV+NLRAQVAYLREQAAQILLNN
Sbjct: 61  LPVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAG 180
           YT RNP EL Y KS F S DPL DLQSWLLAE  SAAAPEFE AAVP+ EMS+ D N+AG
Sbjct: 121 YTIRNPNELLYGKSPF-SGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 185
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of Clc09G08400 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 191.0 bits (484), Expect = 8.2e-49
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SSSS S  PCGACKFLRRKC  GC+FAPYF HE GAS F+AIHKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ--ILLNNY 123
           S RCEAA+TISYEAQARLQDPIYGCVSHIFALQQQV+NL+A++  L++QAAQ  I  ++ 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 124 TTRNPIELPYEKSSFYSD 140
           T+ NP       +S+Y D
Sbjct: 123 TSENP-------NSYYGD 133

[Close]

BLAST of Clc09G08400 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-41
Identity = 79/110 (71.82%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRR+CV GC+FAPYF HE GAS F+AIH+VFGASNASKLL+HLP+  R E
Sbjct: 4   SGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRRE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 119
           AA TI YEAQAR QDPIYGCVSHIF+LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 64  AATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of Clc09G08400 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 165.2 bits (417), Expect = 4.8e-41
Identity = 88/163 (53.99%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SS      PCGACKFLRRKCV GCIFAPYF  E G++ F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTT 123
             R +A VTI YEAQAR++DPIYGCV+HIFALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 124 RNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAV 167
           R P  +P  +  F++  P L +    L  S S     ++ A++
Sbjct: 149 R-PQPMPQPQPLFFTPPPPLAITD--LPASVSPLPSTYDLASI 188

[Close]

BLAST of Clc09G08400 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-38
Identity = 73/104 (70.19%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  PCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAV 71
           PCG CKFLRRKCV GC+FAPYF +E G+S F+AIHKVFGASN SKL++HLP   RC+A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 72  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 116
           TISYEA +RL DPIYGCVS IF+LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of Clc09G08400 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 5   SSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVS 64
           +++ +  PCGACKFLRRKC + CIFAPYF  E GA++F+AIHKVFGASN SKLL ++P+ 
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 65  HRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAA 115
            RCEA VTI+YEAQARL DP+YGCVSHIFALQQQV  L++QV  ++ Q A
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

The following BLAST results are available for this feature:

BLAST of Clc09G08400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896394.1	3.7e-91	95.08	LOB domain-containing protein 29-like [Benincasa hispida]	[more]
XP_004150342.1	2.9e-88	92.97	LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical prot...	[more]
XP_008447245.1	4.2e-87	91.89	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
KAA0042058.1	4.2e-87	91.35	LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB doma...	[more]
XP_023004822.1	3.8e-80	83.61	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]

BLAST of Clc09G08400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	1.2e-47	70.29	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	9.5e-42	79.81	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	3.1e-40	71.82	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	6.8e-40	53.99	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SJW5	5.4e-37	70.19	LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 S...	[more]

BLAST of Clc09G08400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D4	1.4e-88	92.97	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A5D3D179	2.0e-87	91.35	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BGZ5	2.0e-87	91.89	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]
A0A6J1KRG7	1.8e-80	83.61	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]
A0A6J1DSE8	2.7e-79	85.33	LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of Clc09G08400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	8.2e-49	70.29	lateral organ boundaries-domain 29	[more]
AT2G42440.1	2.2e-41	71.82	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	4.8e-41	53.99	LOB domain-containing protein 18	[more]
AT2G31310.1	3.8e-38	70.19	LOB domain-containing protein 14	[more]
AT2G42430.1	1.1e-37	66.36	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 10..132
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 10..132
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 12..109 e-value: 1.2E-34 score: 118.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 11..113 score: 21.66707

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G08400.1	Clc09G08400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus