Clc09G07935 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGTAACATTATTGCAACTGAAGCATTACATTTCTTTCATAATGATCGTTTACTTGCTGGACTTACTAACATTAAGCATTACTCTCAAGTATTTTCTCTCTATAATAAAATGCCTAATGTGGTTGTTTATACCTCTTTGATTTTCCTGTGGTGGAAACTGGAAGGAGGCTAAACATTCGTTAAATGAGATGGTGGATCAAGGTGTTCGACCAAATATGGTCACATTCAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGTCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATACTATATTAA ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGAAAGGTCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATACTATATTAA ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGAAAGGTCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATACTATATTAA MEMPAPTPSITRILLQFTDFLSAPASNLLTKLHNRKGHPGSRVARVMIHTNVPDSFTYNSLIEGFCLVGDLNSARELFVSILY Homology
BLAST of Clc09G07935 vs. NCBI nr
Match: XP_011659250.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X1 [Cucumis sativus] >KAE8646286.1 hypothetical protein Csa_016185 [Cucumis sativus]) HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05 Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0
BLAST of Clc09G07935 vs. NCBI nr
Match: XP_011659251.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05 Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0
BLAST of Clc09G07935 vs. NCBI nr
Match: XP_038877921.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 [Benincasa hispida]) HSP 1 Score: 57.0 bits (136), Expect = 9.0e-05 Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of Clc09G07935 vs. NCBI nr
Match: XP_038877920.1 (pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Benincasa hispida]) HSP 1 Score: 57.0 bits (136), Expect = 9.0e-05 Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of Clc09G07935 vs. NCBI nr
Match: XP_038874245.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida] >XP_038874246.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida] >XP_038874247.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida]) HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04 Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0
BLAST of Clc09G07935 vs. ExPASy TrEMBL
Match: A0A6J1DSW3 (pentatricopeptide repeat-containing protein At1g63330-like OS=Momordica charantia OX=3673 GN=LOC111022854 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05 Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 0
BLAST of Clc09G07935 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05 Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0
BLAST of Clc09G07935 vs. ExPASy TrEMBL
Match: A0A5D3CCW0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00420 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0
BLAST of Clc09G07935 vs. ExPASy TrEMBL
Match: A0A1S4DYL3 (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0
BLAST of Clc09G07935 vs. ExPASy TrEMBL
Match: A0A5A7TFD7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001070 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04 Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0
BLAST of Clc09G07935 vs. TAIR 10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 40.4 bits (93), Expect = 8.1e-04 Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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