Clc09G07210 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G07210
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S19
LocationClcChr09: 5766956 .. 5769604 (-)
RNA-Seq ExpressionClc09G07210
SyntenyClc09G07210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAATTCAGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAACCCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTATCCATTTTCTTTTCTCAATTCGATTTTTTCTGTTTTGGTGGCTGAGAGAACTTGATTTTCGATTCAACGGAGTATTCTAGAATGTAGATTTCGAGAACCGAGTGAATGCTAAATGTGAAGTTTCAACCGTTTCTGACTCTATTGTGGAGTGTGCTCGATTCTGCATTGTTTCTCCTCTTTATTTCCTTTTTTTTTTTTTTTTCTTTTTGCATCTATTGTAGTTATTATTATTTTTTTTAATCAAACAAATAGTTTGCAAGTTTTAGGCTGTAGACTTTTCGATTGATTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTTTAAATCTTAATGGGTTACAAAATTATCTGCTCGTGCTTTGAAGATGCCTCATCTGTTGATTAAGTTTGTGGGTTGGGTACAATTTGTCTATTTGTTCCTCTTTTTTTTTTGCTCGTTGCACTTCATCTGAGAGATCATGCTTTTTTTTTTACTGAGCTTGCCATAGACTGTTTCTGGGATTTTGTACATATTGTGGATATGTTCTCAGTGTAAGGTATTCTTTAACTTTTACAGAGCCCTTATGTTTATGGGATTTGAGTTTCTTATGGTTTTTTTGGCCATATGGAAAAATTTCATGTAATTATCCACCGTTCGGGATTTGGGTTTTCGCCCGCTACTGTAATATTTCATTCTATCAATGAGTTTTTCCTATCAAAGGAAAGGAAGAATTTAGAAGGCTTTTCCGATTCTCCCTGGTTTGGATTATCTGTTTTTTCTAATCCTGTTTTTAGTAGTCATGCTGTTCTTGGATCTTGATGGGTTAGAACTTTCTACCTTATATGTACCTTGTTCACTAATAACTGATAACATTTAACTATATGATTTTTACTAATGAATCGATTATGATCAACAAATGTAATTTTAACATATTTCTTCTGTGGATCATTGCCGAGCAGGTTGAACTTCCGCCATGGGCGGACATTGTGAAAACTGCAAGGTTCAAAGAGCTCGCTCCATATGATGCAGATTGGTATTACGTGAGAGCAGGTTAGTTTCCCTTTTTCTTCTTGTTGACTTCCTCATATTCGTACAAAATGAGCTTAATTTTATTGCCATTTTGTATGTTCTGTTTGTGGGATTTTTATGATTGCCGTTTCAAACATATTCAGCTTCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAAAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGGTAAGTACACGCATTTGAAGTTTTAGCTTATTTCCTCCGATTATGGGCCGTATGGATTGGTTTGAGAAAAAATTGTTTTTAAAAAAATTTATTTTTATTTAAACTCTTGATAAAAATTGTTTAAAATACACTTTAAAATCTATTTTGAGTGGTTTCCTAACACTCCAATTTTTTCTAAAATGATTTATTTTTTGAATTAAACATTTGAAAATGCATTCCGAACACATCTTATGTCTAATATTAAATTCAATTACGACCAGTGATATTCTATACAACCCTGTATTTGCTTGTGTTCAATGCCGATTTCTAACAATTTGTTACAACAATGCTATGTTGGTTGACTTGTTCTTCTGTCTGGATGGTTTGCAGTGGAAGGAGAATTACTTCAAGCGGTCGACGAGATCTCGATCAAGTTGCTGGCCGCATTGTTGTTGCCCCTTGATCGATCAATTACCCGTTCTGTTAATTAGAGATTTGTGTTTTGCTGATGAGATACAATTTCGTATGCATCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGATTACTCTTGTTTTCTCATGGGTTTTGAATGGTTAAAGTTTTTATATTCTTTTTTTTTTTCTGGGTTTTAAGGACGAATCTACAACAACTTTGATGCTTGGCCTACATAATTTTTGCATTTAGAGTTAGTTTTATTCTCATTTGTTGAGGATCGGTTTCCCCTGCTATTAACTATTTTATGTGAATTTTAATGCCCTCTGAAAATGTTCCTTGGGAAAGTGCATTGTCAATTTTTAAGACATACGGTAAAATCAAAACTTTTGCAAGTTTCCTCAATTTGTTTAAAGGTGGGTATTGGATATAAATAGATTGATTTTGGTATTGGATTGTTGGCATTGGTTATATGTTTCTCTTAGAAAAGTGAAATTATTAATCATGATGGTTGGGTCTAGTGATTAATAGTTAATAGGGTACATGTTCTAACAGACTTTTTATGGTGGTCATTTATGTAAAATTTAATATTTTATGAGTTTTCTTGACATTTGAACAATATGGTCAATATTATATGGTGGTCATTTATGTAAAATTTAATATTTTATGAGTTTTCTTGACATTTGAACAATATGGTCAATATTAT

mRNA sequence

GAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAATTCAGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAACCCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGGCGGACATTGTGAAAACTGCAAGGTTCAAAGAGCTCGCTCCATATGATGCAGATTGGTATTACGTGAGAGCAGCTTCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAAAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACTTCAAGCGGTCGACGAGATCTCGATCAAGTTGCTGGCCGCATTGTTGTTGCCCCTTGATCGATCAATTACCCGTTCTGTTAATTAGAGATTTGTGTTTTGCTGATGAGATACAATTTCGTATGCATCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGATTACTCTTGTTTTCTCATGGGTTTTGAATGGTTAAAGTTTTTATATTCTTTTTTTTTTTCTGGGTTTTAAGGACGAATCTACAACAACTTTGATGCTTGGCCTACATAATTTTTGCATTTAGAGTTAGTTTTATTCTCATTTGTTGAGGATCGGTTTCCCCTGCTATTAACTATTTTATGTGAATTTTAATGCCCTCTGAAAATGTTCCTTGGGAAAGTGCATTGTCAATTTTTAAGACATACGGTAAAATCAAAACTTTTGCAAGTTTCCTCAATTTGTTTAAAGGTGGGTATTGGATATAAATAGATTGATTTTGGTATTGGATTGTTGGCATTGGTTATATGTTTCTCTTAGAAAAGTGAAATTATTAATCATGATGGTTGGGTCTAGTGATTAATAGTTAATAGGGTACATGTTCTAACAGACTTTTTATGGTGGTCATTTATGTAAAATTTAATATTTTATGAGTTTTCTTGACATTTGAACAATATGGTCAATATTATATGGTGGTCATTTATGTAAAATTTAATATTTTATGAGTTTTCTTGACATTTGAACAATATGGTCAATATTAT

Coding sequence (CDS)

ATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGGCGGACATTGTGAAAACTGCAAGGTTCAAAGAGCTCGCTCCATATGATGCAGATTGGTATTACGTGAGAGCAGCTTCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAAAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACTTCAAGCGGTCGACGAGATCTCGATCAAGTTGCTGGCCGCATTGTTGTTGCCCCTTGA

Protein sequence

MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Homology
[Close]
BLAST of Clc09G07210 vs. NCBI nr
Match: XP_004148892.2 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008451369.1 PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo] >XP_038896797.1 40S ribosomal protein S19-3-like [Benincasa hispida] >KAA0064090.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN45368.2 hypothetical protein Csa_016233 [Cucumis sativus] >TYK18491.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

[Close]
BLAST of Clc09G07210 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. NCBI nr
Match: XP_004141465.1 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >XP_038890519.1 40S ribosomal protein S19-3 [Benincasa hispida] >KAA0039442.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN52503.1 hypothetical protein Csa_008239 [Cucumis sativus] >TYK00631.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 5.4e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Clc09G07210 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.3e-67
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Clc09G07210 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.6e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Clc09G07210 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.6e-63
Identity = 113/140 (80.71%), Postives = 128/140 (91.43%), Query Frame = 0 

Query: 2   ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAASM 61
           +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of Clc09G07210 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-44
Identity = 75/134 (55.97%), Postives = 108/134 (80.60%), Query Frame = 0 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P W D VKT  FKEL+PY+ DWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of Clc09G07210 vs. ExPASy TrEMBL
Match: A0A5D3D4N1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2032G00080 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. ExPASy TrEMBL
Match: A0A1S3BRB2 (40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. ExPASy TrEMBL
Match: A0A5A7T7J1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002520 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Clc09G07210 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Clc09G07210 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-68
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Clc09G07210 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 250.8 bits (639), Expect = 6.8e-67
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:
BLAST of Clc09G07210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148892.22.2e-75100.0040S ribosomal protein S19-3 [Cucumis sativus] >XP_008451369.1 PREDICTED: 40S rib... [more]
KAG6593129.12.4e-7498.60Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022954406.12.4e-7498.6040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_004141465.13.2e-7497.9040S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S rib... [more]
XP_022923365.15.4e-7497.9040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso... [more]
BLAST of Clc09G07210 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNP81.7e-6784.5140S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
Q9SGA62.3e-6783.2240S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
Q9LF309.6e-6684.8940S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
P409787.6e-6380.7140S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
Q946134.6e-4455.9740S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of Clc09G07210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D4N11.1e-75100.0040S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3BRB21.1e-75100.0040S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=3 SV... [more]
A0A6J1JTW81.2e-7498.6040S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=... [more]
A0A6J1H7M61.2e-7498.6040S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P... [more]
A0A5A7T7J11.5e-7497.9040S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Clc09G07210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G61170.11.2e-6884.51Ribosomal protein S19e family protein [more]
AT3G02080.11.6e-6883.22Ribosomal protein S19e family protein [more]
AT5G15520.16.8e-6784.89Ribosomal protein S19e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
e-value: 1.3E-84
score: 297.1
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..140
e-value: 1.9E-56
score: 189.5
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 3..142
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..142
e-value: 8.6E-71
score: 238.9
NoneNo IPR availablePANTHERPTHR11710:SF2040S RIBOSOMAL PROTEIN S19-3coord: 3..142
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G07210.1Clc09G07210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome