Clc09G06800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G06800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RNA-binding protein BRN1
Location	ClcChr09: 5321307 .. 5327017 (+)
RNA-Seq Expression	Clc09G06800
Synteny	Clc09G06800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATCCAATTTTTTGCCATCAAAGAATCCTTCAGTTTTTTCCCAGCGAAGACTCTCCGAAGAAAAATCCAATCTCAGAGAGAGAAGTGACGGCGAAAACTAGAGAGAGTTTTTTTAGAGAGAGAAAGCTTGAAACCGGCATTAATGGCGGAGGGGAGTAAAGGAGAGAGAAAGGAGAGTAGTCAGGAGGAGGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTGCCAAAGCATATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTTGCACTTGTAGACGAAGTCAACATCATCAGAGACAAGGCCACTCGCGCCTCTAGAGGTTCTTTTTCTTTTTGATTTCAACTTCAACCGGTTTTGTTTTGTTCTTACTTTGCTTAGTTTATATTTGCACTCGCATTCTCTCTGTTTTGGTTGTGTCGTTGTGTTTCTCGTTTGTGATTTATGGTTCGATTGATTTTGAGTAGACTCTAATCGATTGACATTGTGAATTGATGTGTTGAACCCTAATTTTTTTTTGTTCTGGTTTGTGCTTGTGTTTGGTTACTGCATTTTCAGGTTGCTGTTTTGTGATTTGTCCTTCAAGGCAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGTTAGTGGAATCTGGATGTTTAGTTATGAATTATTATAATTTATTTCTCCGTCTTTCTCTCTCTCAATGTTTTGTTTTTTATGTCTTTTCCTTTTCTTGTCGATAATGCTAATCAATGCAATTGATCGATGCGATAGACTTGGCCTTGTGCGTAATTGCTGTTATCGATAACCTAGAAGTTCTAAAAGTCTTGGCTTTTCTGTAAAAGCTGCTTTCTAGTTTCAGACTACAGCACATTGTGATATATATTATATTTGGACATAAAAATGAACTAAGTGAACGCTCTACATTTCTTGTGGAAGCAACTTGAGCAGAGCCTCCAAGCTTTCACTCCCCTTTATTTAAGGAAAAGAAATTTATTGAATCTTTTCATTTTTCTATAATAGTTTTATTTAATTCTGCTTTACGGAATCAAGCTCTTTAACTCTGAAAGATGATTTTATGCAAGGGGATTTTTTTTTTTTTACAAAAAAAACTCTGAAAGATTATACCCTTATGCTTTAGCATTGAATGCACGGACATGCCCTTGCGATGAACAAAAGGAAAAAGATAAAACCCTTTTAGAGAGCTGATTTGTACATAATTAAAGCTAAATATGGACATCAATGGACTGGGATCAACTTCTGATCCTAAATGTTGGAGCAATGATTTTCTAATGTTATCGTTCTGCTTGTAATTAACATTTTAAAGCTTTTTCCTGTTTAATTTGCAATTGACATGGTCGGCAGTTGAGCGATAAATGCGTTTTGAAGAGAAATAATAATGTATTCATTATTCGAGGAAAGAATATGGGTTTCCATCGAATCTCTATCGATAATATATCAGTTATCACCAATCACCATTTTTATGTTTAAAGTATGCTGAAATGATTAAAATTTTGGTGAGTTGGTTAGGAAATAATTGTAGAGTTGACTTAAGGCATTTCATGTAAAGTATATTCCTGATTCACTTAAGAGCTCCTTAATGTTGTTTGCCAATTTACTAAAATATGGTGCAATGAAATAGTGGAAGGGTTGACTCAAATTATTTAATTTAATTTGTATTACTATTCCAGGCATTAATTTCATGGAACGTAGGTATTGTAAAATTTTAAGTGAATGCGAAGACATTCTTTTCTATTTTTCTCTTGCCCTTGCCATTGCATTGAACTATATCTGATCTTATAATCCGTCCTAAAGTTTGTGATTGGATTACATAAGATCAAATCAGTACTCAAACATGCATCGTTAGTTTATAGTCAATGAACGATATTACCTCTGTGCTAAAATAAATGCCTTCTAATTTATTTTTTTAACTCCGTAATTAAACATTGTTATCGTCAAATTGAGTGGTAATTCCCTTCATTTTCCATTCAATCCAGGCTTCTAGTCCGTTGCAAGTAAAATATGCAGATGGCGAGCTGGAAAGACTAGGTGTAATATCACACCCTGCTTGAATATTGCATCTAAAAGATGGTTCCTAACATCCATCAACATTGCCACTTTCTTTAGTGATCTGTATTTATCTTGCTAAAAGATTAATTTTTAGTGTGTATGGATAGTAATGGTTGGTTATTTTTGAAAAGAGCAGAACACAAACTCTTTATTGGAATGCTTCCGAAAAATGTGTCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACAATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGCAAAGGTAGTTTTCGGTTTGTTTCAGCTGAATTTGAGTTGAAGTTATGAAAGATATCACACATTCAGTTGAATCTTCACCATTAGCTCCATATGTTGCTCAAGTTCAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGTAATGGAAATTAAATTGTCTAAATGATCGTGTCTAAGTTAGTTTTCTAGTAATGTTTAGCTTTCAAATTTTGTTGATAGGAGGTAATACCAAAATCATTGAAACCATAGAAAGCCATTATTTTGCCGAATATCCACATCCACGTTGTCGATATTTTGTGCCTTTGTGGGCAGTTCTAATATTTCCCGACATTGTGATATTTCTTGGATAAGAAAAAAGATATTGGTCGCTCTTGTTATGTTGAACCCTTTTATTCGTGGGAATTTTTTATTGGAATTTCATTCCATGCACTCCGTTCATCTCATGGATGCTTTTTATGCATCATGGTATTATATTGGAGTAATATTTTAATATATCGAGTCCAGCTACATCTATGAATGGGAAAGAAGACAATCGGGGAGTCTGCTAAGGATATTAAAATCTGTGTTCAGATCATTGCTTGCCTAAACTGCATTGAATATTCTTGCCATATCTCTTCTTCTTTTCGTTTCCACTATTGCTCATGACTGCATTCCTTTTATTTGTCCATTGGCTTTATGTTTATTTTTATTTTAATTTAAATGAATTTTGTAATGTTCATACTAATACTAGCCAGATGGTGTTGTGCCCTGAACAGAACAGCATTTATGATTATCTTTGTTAATGAATAAATTGTGTTTAGCTATAACTGGTTGGAATTTTTTTGGTAAGGATTTTTTAATTCAAGTCAAATTCATTGTACTCAACAGTTGAGTCTTCTTTCACAAGCCAACTTCTTTTTAGGGCCGACATATTATGAAAATCCTAGCTTTCCAGTAAGTAGGATAGTCAGTCATATACTCATATCCTATACCCCAGTGAAAGTGTGGAAGAGTATGAATATATACATACAGACGTAGGTTTAGGGAGGCATCATGGATTTGATTGTTTTTTCCCCCCTACTCAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCTGACACAGAGAAGGAAAGGCAAGCTCGGAAAGCTCAGAAAGCTCAATCACAGGCCTCTAATGTGCTTAATGCAGACTCCCAACATCCTTCACTGTTTGGAGCCATGCCACTGGGTTATGTTCCACCATATAATGGCTATGGTTATCAGGTCAGTTTTGCAAGGGGATTATTCTTGGGCTTCTTCAATTTGTATGTATGCATGTCTGTGCAATGTGCAAGGATCTTTTTTCCTTTCTCTCTTTTTATTTATTGCATGGGTGTCTGTGTTGTCCTTGTTCTTGTACTTTTGGTTATCATGCACTTCAAAGGAACGGTTTTCTTTTGAATGGTAATGAATGTTGTTATCAATCCGATACCTGATCCATGATTGTAATCTCAATTTTCTTTTGAATGGTTTTCATTTTCATGTTTGCAATTGAGCATTTTTATATTGAATCGTGAGGGTAGCCAATGATAGTCTCTACTCTCTCTTTGTAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAATCAAGGAAATGCAATGCGTGGGATCCCACCTGACCTTGGCCCGGGTATGGCCACTAGAAATTATGGCATGCCTCCTGCAAGTTACGTTGGCTCTGCCTATCCTGGAGTTCCAGGTCTTCAGCATCCCATGGCGTACCCTGGAGGAATGATGAGTCCTGGGGTTGTGAGCAGTTCACCTGGTCCAGGGCCATTTACTGGTGGGAAGAATAACTCTCCAACGTCTAGTTTGGGTAAAGGCTCTGGAGGTCAGATTGAAGGTAGTTAGTTATTTCCCTTTTTGTCTGACCTTGATTTATTGATTGGTTTTGAGCTTCTGGGGGGTTATAGTTCACTATCTTTTTTTCTCTAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATTTGGGGATTTGGAGCTTGCTAATTCTTTTCGAGCATTTGGACGAGTTTTGAGCGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGTGAGCACGTGTTTTCTTGCTATTTTACTCCTGCAACTTTGTGCAAAAACTAATGTTGAAGTTGAAAGTGTTTTTAACCATTCTCCTCTGTATTTTGGTACGTGTAGACATCTAACTGTTGTTCCATCTACAGGGTTTGTTAGTTATGATTCCGCTGAGGCTGCTCAATCTGCCATAAGTATGATGAATGGATGCCAATTAGGTGGAAAGAAATTAAAAGTCCAGCTGAAGAGAGACAACAAACAGAGTAAACCATACTGATTCGGAGTAATGTAATCAAAGGCAGCAAAGTTGCTACCGCTTGCTGACATTGGGGGGCCTAAATGCATGACAATCATTCCATTATCAGATCTTAGGGTGGATTGGGGACGGTCTATGGTTAAAAATTCATTACTCCATCCTGCCTGTGATTGCATCATCAGATGAAATCAAAGATACTTGTAATCCATGGTTCGGCCATGCCGATGCAATTTGTAATTTATGTATCTTGGAAGATTAACATTCTTTAATTGATTCTTCCGGGACATCTGTTGATTGTAAAATACAATGTAATTATAAATGATCCCTTGATTCTTTTAGGTTTATTGATTTAGTATTGCCTAATTTGATGCTTTTTTGCCTTCTGGTTTCTTTTGTTCTTTGAAAGAAATATCTCTTGCTTGTAGTACTGTGGGAAGCATATCTTGTCTTAGATTATTTATTACTAGACTACTCTTTTTTCTCTAGGACTAAGAGCCTGCATGTTGAAGATGATCAACATAGTTCCAAACAATCTGACATCCCTTTAAATGCTCTGACTTAAACAGCAAAAAGTTTGTTTGATTTTCGCCCGTGTATTTTGTTAGAAGATGGCTTTTGTTGGTTTATTATACATGTGGCTTTGCTGCTTTTCTACCAATGCACGACTTGTTCCTTTATTTTAACGAGCACATACATACGATTCTGTTATTATTTTTATTTTTTAAAAAACAATACTTAATCCTTTAATCTTATTTCTTTCTTTTCTTGCAGCCTTCAAATGAAGAATGCTGGATATTTGTCCAGGCAACTCATCAGCTGCAGCAGCATCATAGAGGTATTTCGGATAATCGGTTTTGGAGTTTGATTCCTCCAAGAAGTATTCTATTTGTTCAGAAATCACATTTCATGACTATTGTTGTTCTAAGTTCTTAG

mRNA sequence

GAGATCCAATTTTTTGCCATCAAAGAATCCTTCAGTTTTTTCCCAGCGAAGACTCTCCGAAGAAAAATCCAATCTCAGAGAGAGAAGTGACGGCGAAAACTAGAGAGAGTTTTTTTAGAGAGAGAAAGCTTGAAACCGGCATTAATGGCGGAGGGGAGTAAAGGAGAGAGAAAGGAGAGTAGTCAGGAGGAGGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTGCCAAAGCATATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTTGCACTTGTAGACGAAGTCAACATCATCAGAGACAAGGCCACTCGCGCCTCTAGAGGTTGCTGTTTTGTGATTTGTCCTTCAAGGCAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTAAAATATGCAGATGGCGAGCTGGAAAGACTAGAACACAAACTCTTTATTGGAATGCTTCCGAAAAATGTGTCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACAATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGCAAAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCTGACACAGAGAAGGAAAGGCAAGCTCGGAAAGCTCAGAAAGCTCAATCACAGGCCTCTAATGTGCTTAATGCAGACTCCCAACATCCTTCACTGTTTGGAGCCATGCCACTGGGTTATGTTCCACCATATAATGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAATCAAGGAAATGCAATGCGTGGGATCCCACCTGACCTTGGCCCGGGTATGGCCACTAGAAATTATGGCATGCCTCCTGCAAGTTACGTTGGCTCTGCCTATCCTGGAGTTCCAGGTCTTCAGCATCCCATGGCGTACCCTGGAGGAATGATGAGTCCTGGGGTTGTGAGCAGTTCACCTGGTCCAGGGCCATTTACTGGTGGGAAGAATAACTCTCCAACGTCTAGTTTGGGTAAAGGCTCTGGAGGTCAGATTGAAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATTTGGGGATTTGGAGCTTGCTAATTCTTTTCGAGCATTTGGACGAGTTTTGAGCGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCGCTGAGGCTGCTCAATCTGCCATAACAAAGTTGCTACCGCTTGCTGACATTGGGGGGCCTAAATGCATGACAATCATTCCATTATCAGATCTTAGGGTGGATTGGGGACGGTCTATGCCTTCAAATGAAGAATGCTGGATATTTGTCCAGGCAACTCATCAGCTGCAGCAGCATCATAGAGGTATTTCGGATAATCGGTTTTGGAGTTTGATTCCTCCAAGAAGTATTCTATTTGTTCAGAAATCACATTTCATGACTATTGTTGTTCTAAGTTCTTAG

Coding sequence (CDS)

ATGGCGGAGGGGAGTAAAGGAGAGAGAAAGGAGAGTAGTCAGGAGGAGGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTGCCAAAGCATATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTTGCACTTGTAGACGAAGTCAACATCATCAGAGACAAGGCCACTCGCGCCTCTAGAGGTTGCTGTTTTGTGATTTGTCCTTCAAGGCAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTAAAATATGCAGATGGCGAGCTGGAAAGACTAGAACACAAACTCTTTATTGGAATGCTTCCGAAAAATGTGTCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACAATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGCAAAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCTGACACAGAGAAGGAAAGGCAAGCTCGGAAAGCTCAGAAAGCTCAATCACAGGCCTCTAATGTGCTTAATGCAGACTCCCAACATCCTTCACTGTTTGGAGCCATGCCACTGGGTTATGTTCCACCATATAATGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAATCAAGGAAATGCAATGCGTGGGATCCCACCTGACCTTGGCCCGGGTATGGCCACTAGAAATTATGGCATGCCTCCTGCAAGTTACGTTGGCTCTGCCTATCCTGGAGTTCCAGGTCTTCAGCATCCCATGGCGTACCCTGGAGGAATGATGAGTCCTGGGGTTGTGAGCAGTTCACCTGGTCCAGGGCCATTTACTGGTGGGAAGAATAACTCTCCAACGTCTAGTTTGGGTAAAGGCTCTGGAGGTCAGATTGAAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATTTGGGGATTTGGAGCTTGCTAATTCTTTTCGAGCATTTGGACGAGTTTTGAGCGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCGCTGAGGCTGCTCAATCTGCCATAACAAAGTTGCTACCGCTTGCTGACATTGGGGGGCCTAAATGCATGACAATCATTCCATTATCAGATCTTAGGGTGGATTGGGGACGGTCTATGCCTTCAAATGAAGAATGCTGGATATTTGTCCAGGCAACTCATCAGCTGCAGCAGCATCATAGAGGTATTTCGGATAATCGGTTTTGGAGTTTGATTCCTCCAAGAAGTATTCTATTTGTTCAGAAATCACATTTCATGACTATTGTTGTTCTAAGTTCTTAG

Protein sequence

MAEGSKGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPLADIGGPKCMTIIPLSDLRVDWGRSMPSNEECWIFVQATHQLQQHHRGISDNRFWSLIPPRSILFVQKSHFMTIVVLSS

Homology

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BLAST of Clc09G06800 vs. NCBI nr
Match: XP_038900154.1 (RNA-binding protein BRN1 [Benincasa hispida])

HSP 1 Score: 800.0 bits (2065), Expect = 1.1e-227
Identity = 405/425 (95.29%), Postives = 413/425 (97.18%), Query Frame = 0


Query: 1   MAEGSKGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAEGS+GERKES+QEEEDSVKLFVGQVPK MTEAQLLAMFQEFALVDEVNIIRDK TRAS
Sbjct: 1   MAEGSRGERKESNQEEEDSVKLFVGQVPKLMTEAQLLAMFQEFALVDEVNIIRDKTTRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVS 120
           RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVS
Sbjct: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVS 120

Query: 121 EDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 180
           EDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP
Sbjct: 121 EDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 180

Query: 181 LVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSY 240
           LVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSY
Sbjct: 181 LVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSY 240

Query: 241 GLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPGV 300
           GLMQYHLPPMQNQSG+PNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPA+YV SAYPGV
Sbjct: 241 GLMQYHLPPMQNQSGYPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPANYVSSAYPGV 300

Query: 301 PGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIYH 360
           PGLQHPMAY GGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIYH
Sbjct: 301 PGLQHPMAYAGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIYH 360

Query: 361 IPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPLAD 420
           IPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAI+ ++    
Sbjct: 361 IPQEFGDPELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAIS-MMNGCQ 420

Query: 421 IGGPK 426
           +GG K
Sbjct: 421 LGGKK 424

[Close]

BLAST of Clc09G06800 vs. NCBI nr
Match: KAG6575869.1 (RNA-binding protein BRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 800.0 bits (2065), Expect = 1.1e-227
Identity = 415/449 (92.43%), Postives = 420/449 (93.54%), Query Frame = 0


Query: 1   MAEGS-KGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRA 60
           MAEGS  GERK SSQEEEDSVKLFVGQVPKHMTEAQLL MFQEFALVDEVNIIRDK TRA
Sbjct: 1   MAEGSGGGERKGSSQEEEDSVKLFVGQVPKHMTEAQLLVMFQEFALVDEVNIIRDKTTRA 60

Query: 61  SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120
           SRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV
Sbjct: 61  SRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120

Query: 121 SEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSV 180
           SEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGK KMEGSSV
Sbjct: 121 SEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSSV 180

Query: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGS 240
           PLVVKWADTEKERQARKAQKAQSQASNVLNADSQ  SLFGA+PL Y+PPYNGYGYQAPGS
Sbjct: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLSYIPPYNGYGYQAPGS 240

Query: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPG 300
           YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 
Sbjct: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPA 300

Query: 301 VPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIY 360
           VPGLQHPMAYPGGMMSPGVVSSS  PGPFTGG NNSPTSSLGKGSG QIEGPPGANLFIY
Sbjct: 301 VPGLQHPMAYPGGMMSPGVVSSS--PGPFTGGNNNSPTSSLGKGSGSQIEGPPGANLFIY 360

Query: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAIT------ 420
           HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS EAAQSAI+      
Sbjct: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSVEAAQSAISRMNGCQ 420

Query: 421 --KLLPLADIGG-PKCMTIIPLSDLRVDW 440
             KLLPLA IGG  K  T+IPLSDLRVDW
Sbjct: 421 LAKLLPLAYIGGAQKHTTVIPLSDLRVDW 447

[Close]

BLAST of Clc09G06800 vs. NCBI nr
Match: XP_008451423.1 (PREDICTED: RNA-binding protein BRN1 [Cucumis melo])

HSP 1 Score: 780.8 bits (2015), Expect = 7.0e-222
Identity = 403/427 (94.38%), Postives = 410/427 (96.02%), Query Frame = 0


Query: 1   MAEGSK-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGS+ GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNY MPPASY  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300

Query: 301 GVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFI 360
           GVP LQHPMAYPGGMMSPGVVSSSPGPGPFTGGK NSPTSS+GKGSGGQIEGPPGANLFI
Sbjct: 301 GVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKGSGGQIEGPPGANLFI 360

Query: 361 YHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPL 420
           YHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAI+ ++  
Sbjct: 361 YHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAIS-MMNG 420

Query: 421 ADIGGPK 426
             +GG K
Sbjct: 421 CQLGGKK 423

[Close]

BLAST of Clc09G06800 vs. NCBI nr
Match: XP_004148884.1 (RNA-binding protein BRN1 [Cucumis sativus] >KGN44838.1 hypothetical protein Csa_016202 [Cucumis sativus])

HSP 1 Score: 780.4 bits (2014), Expect = 9.2e-222
Identity = 403/427 (94.38%), Postives = 409/427 (95.78%), Query Frame = 0


Query: 1   MAEGSK-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGS+ GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNY MPPASY  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300

Query: 301 GVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFI 360
           GVP LQHPMAYPGGMMSPGVVSSSPGPGPFTGGK NSPTSS+GKGSGGQIEGPPGANLFI
Sbjct: 301 GVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKGSGGQIEGPPGANLFI 360

Query: 361 YHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPL 420
           YHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAI+ +   
Sbjct: 361 YHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAISTMNG- 420

Query: 421 ADIGGPK 426
             +GG K
Sbjct: 421 CQLGGKK 423

[Close]

BLAST of Clc09G06800 vs. NCBI nr
Match: XP_022953846.1 (RNA-binding protein BRN1-like [Cucurbita moschata])

HSP 1 Score: 777.3 bits (2006), Expect = 7.8e-221
Identity = 399/426 (93.66%), Postives = 406/426 (95.31%), Query Frame = 0


Query: 1   MAEGS-KGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRA 60
           MAEGS  GERK SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDK TRA
Sbjct: 1   MAEGSGGGERKGSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRA 60

Query: 61  SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120
           SRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV
Sbjct: 61  SRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120

Query: 121 SEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSV 180
           SEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGK KMEGSSV
Sbjct: 121 SEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSSV 180

Query: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGS 240
           PLVVKWADTEKERQARKAQKAQSQASNVLNADSQ  SLFGA+PLGY+PPYNGYGYQAPGS
Sbjct: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLGYIPPYNGYGYQAPGS 240

Query: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPG 300
           YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 
Sbjct: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPA 300

Query: 301 VPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIY 360
           VPGLQHPMAYPGGMMSPGVVSSS  PGPFTGG NNSPTSSLGKGSG QIEGPPGANLFIY
Sbjct: 301 VPGLQHPMAYPGGMMSPGVVSSS--PGPFTGGNNNSPTSSLGKGSGSQIEGPPGANLFIY 360

Query: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPLA 420
           HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS EAAQSAI+++    
Sbjct: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSVEAAQSAISRMNG-C 420

Query: 421 DIGGPK 426
            +GG K
Sbjct: 421 QLGGKK 423

[Close]

BLAST of Clc09G06800 vs. ExPASy Swiss-Prot
Match: Q8LFS6 (RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 1.0e-151
Identity = 287/429 (66.90%), Postives = 343/429 (79.95%), Query Frame = 0


Query: 1   MAEGSKGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAE  +  R+++  EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TRAS
Sbjct: 1   MAEAKEENREKN--EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVS 120
           RGCCF++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVS
Sbjct: 61  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVS 120

Query: 121 EDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 180
           E EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E+INGK KMEGS+VP
Sbjct: 121 EAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVP 180

Query: 181 LVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGY-QAPGS 240
           LVVKWADTE+ER  R+ QKAQS  + + N D  +PSLFGA+P+GYVPPYNGYGY Q PG+
Sbjct: 181 LVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGT 240

Query: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQG--NAMRGIPPD-LGPGMATRNYGMPPASYVGSA 300
           YG   Y LPP+QNQ+ F NMI Q NQG  NA++G  PD + P +A RN+ MPP +Y+GS 
Sbjct: 241 YG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSG 300

Query: 301 YPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANL 360
           YP + G   P AYP G++SP  +SSSPG    +     S    +G  S  Q EGP GANL
Sbjct: 301 YPAMRGHPFPFAYPRGIVSPRPLSSSPG----SISPGMSTPLGIGLSSVVQTEGPEGANL 360

Query: 361 FIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLL 420
           FIY+IP+EFGD ELA +F++FG VLSAKVFVDK +GVSKCFGFVSYDS  AAQ+AI  ++
Sbjct: 361 FIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI-DMM 419

Query: 421 PLADIGGPK 426
               +GG K
Sbjct: 421 NGRHLGGKK 419

[Close]

BLAST of Clc09G06800 vs. ExPASy Swiss-Prot
Match: Q8GZ26 (RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.1e-132
Identity = 254/412 (61.65%), Postives = 309/412 (75.00%), Query Frame = 0


Query: 11  ESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPS 70
           E + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++K TRA RGCCF+ CP+
Sbjct: 3   EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62

Query: 71  RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQ 130
           R++ADK +N+ HNKKTLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV  LFS+
Sbjct: 63  REDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSE 122

Query: 131 YGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEK 190
           YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG++VPL+VKWADTEK
Sbjct: 123 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 182

Query: 191 ERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPM 250
           ERQAR+  K QS  S +   D Q+PS+FGA+P+ YVPPYNGYGY  PG+YG   Y LPP+
Sbjct: 183 ERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPI 242

Query: 251 QNQSGFPNMI-PQLNQGNAMRG------IPPDLGPGMATRNYGMPPASYVGSAYPGVPGL 310
           Q Q  F N+I P    G A++G      +PP L P    RN+     +Y      G  GL
Sbjct: 243 QTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY------GYHGL 302

Query: 311 QHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQ 370
           Q+PMA+P GM+ P +  ++  PG    G   S  SSL      Q EGP GANLFIY+IP+
Sbjct: 303 QYPMAFPRGMIPPRLPLTTVSPGISNNG--TSIPSSL------QTEGPAGANLFIYNIPR 362

Query: 371 EFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKL 416
           EF D ELA +F+ FG+VLSAKVFVDK +G+SKCFGF+SYDS  AAQ+AI  +
Sbjct: 363 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391

[Close]

BLAST of Clc09G06800 vs. ExPASy Swiss-Prot
Match: A0JM51 (CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.5e-62
Identity = 158/441 (35.83%), Postives = 234/441 (53.06%), Query Frame = 0


Query: 9   RKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVIC 68
           ++  S ++ D++KLFVGQ+P+++ E  L  +F++F  + E+ +++D+ T   +GC F+  
Sbjct: 36  QQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTY 95

Query: 69  PSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLF 128
            +R  A KA  A H +KTLPG + P+QVK AD E    + KLF+GML K  SE+EV+ +F
Sbjct: 96  CARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMF 155

Query: 129 SQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADT 188
             +G+I++  +LRG   +SKGCAF+K+ +  +A AA++A++G   M G+S  LVVK+ADT
Sbjct: 156 QAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFADT 215

Query: 189 EKERQARK-------------------------AQKAQSQASNVLNADS---QHPSL-FG 248
           +KER  R+                         AQ    Q + VL+        PS+ F 
Sbjct: 216 DKERTLRRMQQMVGQLGIFTPSLALPISPYSAYAQALMQQQTTVLSTSHGSYLSPSVAFP 275

Query: 249 AMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPG 308
           +  +  +   N  G  A         H PP+   +  P ++  L  G       P   P 
Sbjct: 276 SCHIQQIGAVNLNGLPAAPITPASGLHSPPVIGTAAVPGLVAPLTNGFPGLVPFPSSHPA 335

Query: 309 MAT--RNYGMP-----PASYVGSAYPGVPGLQHPMA-YPGGMMSPGVVSSSPGPGPFTGG 368
           + T   N  +P     PA  V S +P   G+Q   A YP   ++P V  S+P P P    
Sbjct: 336 LDTIYTNSIVPYPAQSPALTVESLHPSFTGVQQYSAIYPTAALTP-VTHSTPQPPPIL-- 395

Query: 369 KNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTS 413
                          Q EGP G NLFIYH+PQEFGD EL   F  FG ++S+KVF+D+ +
Sbjct: 396 --------------QQREGPEGCNLFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRAT 455

[Close]

BLAST of Clc09G06800 vs. ExPASy Swiss-Prot
Match: Q08E07 (CUGBP Elav-like family member 3 OS=Bos taurus OX=9913 GN=CELF3 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-59
Identity = 157/441 (35.60%), Postives = 222/441 (50.34%), Query Frame = 0


Query: 15  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEA 74
           +E D++KLFVGQ+P+H+ E  L  +F++F  + E+ +I+DK T   +GC F+   +R  A
Sbjct: 2   KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSA 61

Query: 75  DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 134
            KA +A H +KTLPG + P+QVK AD E    + KLF+GML K  ++++V  +F  +GTI
Sbjct: 62  LKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTI 121

Query: 135 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQA 194
            +  +LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKER  
Sbjct: 122 DECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGL 181

Query: 195 RKAQKAQSQA-------------SNVLNADSQHPSLFGAMPLGYVPPYNGYG------YQ 254
           R+ Q+  +Q              S    A  Q  +   A    Y+ P             
Sbjct: 182 RRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMA 241

Query: 255 APGSYGLMQYHLPPMQNQSGFP-------NMIPQLNQGNAMRGIP--------PD-LGPG 314
           A  + GL+   + P    S  P       + IP     N    +P        PD L P 
Sbjct: 242 AINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPN 301

Query: 315 MATRNYGMPPASYVGSAYPGVPGLQHPMAYPGGM--------MSPGVVSSSPGPGPFTGG 374
                    PA+ V        G+QH  AYP             P +V+  P P P    
Sbjct: 302 GVHPYPAQSPAAPVDPLQQAYAGMQHYTAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQ 361

Query: 375 KNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTS 413
           +              Q EGP G N+FIYH+PQEF D E+   F  FG V+SAKVFVD+ +
Sbjct: 362 QQQQQQQ--------QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRAT 421

[Close]

BLAST of Clc09G06800 vs. ExPASy Swiss-Prot
Match: Q9IBD1 (CUGBP Elav-like family member 3 OS=Danio rerio OX=7955 GN=celf3 PE=2 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 7.9e-59
Identity = 156/431 (36.19%), Postives = 230/431 (53.36%), Query Frame = 0


Query: 15  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEA 74
           +E D++KLF+GQ+P+++ E  L  +F++F  + E+ +I+DK T   +GC F+   +R+ A
Sbjct: 2   KEADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESA 61

Query: 75  DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 134
            KA NA H +KTLPG + P+QVK AD E  R + KLF+GML K +S+ +V  +F  +G+I
Sbjct: 62  LKAQNALHEQKTLPGMNRPIQVKPADSE-GRGDRKLFVGMLGKQLSDADVRKMFEPFGSI 121

Query: 135 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQA 194
           ++  +LRG    SKGCAF+KY++  +A AA+ A++G   + G+S  LVVK+ADTEKER  
Sbjct: 122 EECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKERGI 181

Query: 195 RKAQKAQSQASNVLNADSQHPSLFGAMPLGYVP-----PYNGYGYQAPGSYGLMQYHLPP 254
           R+ Q+  SQ   V++  S H   + A     V        + Y         +    L  
Sbjct: 182 RRMQQVASQL-GVISPMSLHLGAYNAYTQALVQQQALVAQSAYLSPVATVAAVQMQQLAA 241

Query: 255 MQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPGVPGLQHPMAY 314
           +   S     I  +   +     PP +    AT    +PP   V S YP VP   +  + 
Sbjct: 242 LNPSSIIATPIASITPSSG-TSTPPTIA---ATPVPALPPPIAVNS-YPPVPAAPNGQSA 301

Query: 315 PGGMMSPGV---VSSSPGPGP----FTGGKNNSPTSSLGKGSGG---------------- 374
              + + GV    + SP   P    +TG ++ + T     G  G                
Sbjct: 302 SEALYTNGVHPYQAQSPALDPLQQAYTGMQHYTATYPAAYGLVGQPFPHQPTLVAQQPQQ 361

Query: 375 -----QIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVS 413
                Q EGP G N+FIYH+PQEF D E+   F  FG V+SAKVFVD+ +  SKCFGFVS
Sbjct: 362 PQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVS 421

[Close]

BLAST of Clc09G06800 vs. ExPASy TrEMBL
Match: A0A1S3BRF9 (RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1)

HSP 1 Score: 780.8 bits (2015), Expect = 3.4e-222
Identity = 403/427 (94.38%), Postives = 410/427 (96.02%), Query Frame = 0


Query: 1   MAEGSK-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGS+ GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNY MPPASY  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300

Query: 301 GVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFI 360
           GVP LQHPMAYPGGMMSPGVVSSSPGPGPFTGGK NSPTSS+GKGSGGQIEGPPGANLFI
Sbjct: 301 GVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKGSGGQIEGPPGANLFI 360

Query: 361 YHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPL 420
           YHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAI+ ++  
Sbjct: 361 YHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAIS-MMNG 420

Query: 421 ADIGGPK 426
             +GG K
Sbjct: 421 CQLGGKK 423

[Close]

BLAST of Clc09G06800 vs. ExPASy TrEMBL
Match: A0A0A0K5R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1)

HSP 1 Score: 780.4 bits (2014), Expect = 4.4e-222
Identity = 403/427 (94.38%), Postives = 409/427 (95.78%), Query Frame = 0


Query: 1   MAEGSK-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGS+ GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNY MPPASY  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300

Query: 301 GVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFI 360
           GVP LQHPMAYPGGMMSPGVVSSSPGPGPFTGGK NSPTSS+GKGSGGQIEGPPGANLFI
Sbjct: 301 GVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKGSGGQIEGPPGANLFI 360

Query: 361 YHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPL 420
           YHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAI+ +   
Sbjct: 361 YHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAISTMNG- 420

Query: 421 ADIGGPK 426
             +GG K
Sbjct: 421 CQLGGKK 423

[Close]

BLAST of Clc09G06800 vs. ExPASy TrEMBL
Match: A0A6J1GP82 (RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 3.8e-221
Identity = 399/426 (93.66%), Postives = 406/426 (95.31%), Query Frame = 0


Query: 1   MAEGS-KGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRA 60
           MAEGS  GERK SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDK TRA
Sbjct: 1   MAEGSGGGERKGSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRA 60

Query: 61  SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120
           SRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV
Sbjct: 61  SRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120

Query: 121 SEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSV 180
           SEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGK KMEGSSV
Sbjct: 121 SEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSSV 180

Query: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGS 240
           PLVVKWADTEKERQARKAQKAQSQASNVLNADSQ  SLFGA+PLGY+PPYNGYGYQAPGS
Sbjct: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLGYIPPYNGYGYQAPGS 240

Query: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPG 300
           YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 
Sbjct: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPA 300

Query: 301 VPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIY 360
           VPGLQHPMAYPGGMMSPGVVSSS  PGPFTGG NNSPTSSLGKGSG QIEGPPGANLFIY
Sbjct: 301 VPGLQHPMAYPGGMMSPGVVSSS--PGPFTGGNNNSPTSSLGKGSGSQIEGPPGANLFIY 360

Query: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPLA 420
           HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS EAAQSAI+++    
Sbjct: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSVEAAQSAISRMNG-C 420

Query: 421 DIGGPK 426
            +GG K
Sbjct: 421 QLGGKK 423

[Close]

BLAST of Clc09G06800 vs. ExPASy TrEMBL
Match: A0A6J1JX41 (RNA-binding protein BRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111488257 PE=4 SV=1)

HSP 1 Score: 765.8 bits (1976), Expect = 1.1e-217
Identity = 395/426 (92.72%), Postives = 403/426 (94.60%), Query Frame = 0


Query: 1   MAEGS-KGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRA 60
           MAEGS  GERK SSQEEEDSVKLFVGQVPKH+TEAQLLAMFQE ALVDEVNIIRDK TRA
Sbjct: 1   MAEGSGGGERKGSSQEEEDSVKLFVGQVPKHITEAQLLAMFQELALVDEVNIIRDKTTRA 60

Query: 61  SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120
           SRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV
Sbjct: 61  SRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNV 120

Query: 121 SEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSV 180
           SEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGK KMEGSSV
Sbjct: 121 SEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSSV 180

Query: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGS 240
           PLVVKWADTEKERQARKAQKAQSQASNVLNADSQ  SLFGA+PLGY+PPYNGYGYQAPGS
Sbjct: 181 PLVVKWADTEKERQARKAQKAQSQASNVLNADSQCSSLFGAVPLGYIPPYNGYGYQAPGS 240

Query: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYPG 300
           YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGI PDLGPGMATRNYGMPPASYVGSAYP 
Sbjct: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGISPDLGPGMATRNYGMPPASYVGSAYPA 300

Query: 301 VPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIY 360
           VP LQHPMAYPGGMMSPGVVSSS  PGPFTGG NNSPTSSLGKGSG QIEGPPGANLFIY
Sbjct: 301 VPCLQHPMAYPGGMMSPGVVSSS--PGPFTGGNNNSPTSSLGKGSGSQIEGPPGANLFIY 360

Query: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLLPLA 420
           HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS EAAQSAI+++    
Sbjct: 361 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSVEAAQSAISRMNG-C 420

Query: 421 DIGGPK 426
            +GG K
Sbjct: 421 QLGGKK 423

[Close]

BLAST of Clc09G06800 vs. ExPASy TrEMBL
Match: A0A5A7UR22 (RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00150 PE=4 SV=1)

HSP 1 Score: 765.4 bits (1975), Expect = 1.5e-217
Identity = 403/445 (90.56%), Postives = 410/445 (92.13%), Query Frame = 0


Query: 1   MAEGSK-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGS+ GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRG-----------------CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120
           ASRG                 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG
Sbjct: 61  ASRGVFFFFFSPFDFNFNYFSCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120

Query: 121 ELERL-EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ 180
           ELERL EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ
Sbjct: 121 ELERLAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ 180

Query: 181 AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGA 240
           AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQHPSLFGA
Sbjct: 181 AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA 240

Query: 241 MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM 300
           MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM
Sbjct: 241 MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM 300

Query: 301 ATRNYGMPPASYVGSAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSL 360
           ATRNY MPPASY  SAYPGVP LQHPMAYPGGMMSPGVVSSSPGPGPFTGGK NSPTSS+
Sbjct: 301 ATRNYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSM 360

Query: 361 GKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFV 420
           GKGSGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFV
Sbjct: 361 GKGSGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFV 420

Query: 421 SYDSAEAAQSAITKLLPLADIGGPK 426
           SYDSAEAAQSAI+ ++    +GG K
Sbjct: 421 SYDSAEAAQSAIS-MMNGCQLGGKK 441

[Close]

BLAST of Clc09G06800 vs. TAIR 10
Match: AT4G03110.1 (RNA-binding protein-defense related 1 )

HSP 1 Score: 538.1 bits (1385), Expect = 7.4e-153
Identity = 287/429 (66.90%), Postives = 343/429 (79.95%), Query Frame = 0


Query: 1   MAEGSKGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAE  +  R+++  EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TRAS
Sbjct: 1   MAEAKEENREKN--EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVS 120
           RGCCF++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVS
Sbjct: 61  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVS 120

Query: 121 EDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 180
           E EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E+INGK KMEGS+VP
Sbjct: 121 EAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVP 180

Query: 181 LVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGY-QAPGS 240
           LVVKWADTE+ER  R+ QKAQS  + + N D  +PSLFGA+P+GYVPPYNGYGY Q PG+
Sbjct: 181 LVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGT 240

Query: 241 YGLMQYHLPPMQNQSGFPNMIPQLNQG--NAMRGIPPD-LGPGMATRNYGMPPASYVGSA 300
           YG   Y LPP+QNQ+ F NMI Q NQG  NA++G  PD + P +A RN+ MPP +Y+GS 
Sbjct: 241 YG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSG 300

Query: 301 YPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANL 360
           YP + G   P AYP G++SP  +SSSPG    +     S    +G  S  Q EGP GANL
Sbjct: 301 YPAMRGHPFPFAYPRGIVSPRPLSSSPG----SISPGMSTPLGIGLSSVVQTEGPEGANL 360

Query: 361 FIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKLL 420
           FIY+IP+EFGD ELA +F++FG VLSAKVFVDK +GVSKCFGFVSYDS  AAQ+AI  ++
Sbjct: 361 FIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI-DMM 419

Query: 421 PLADIGGPK 426
               +GG K
Sbjct: 421 NGRHLGGKK 419

[Close]

BLAST of Clc09G06800 vs. TAIR 10
Match: AT4G03110.2 (RNA-binding protein-defense related 1 )

HSP 1 Score: 525.4 bits (1352), Expect = 5.0e-149
Identity = 274/406 (67.49%), Postives = 328/406 (80.79%), Query Frame = 0


Query: 1   MAEGSKGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAE  +  R+++  EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TRAS
Sbjct: 1   MAEAKEENREKN--EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVS 120
           RGCCF++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVS
Sbjct: 61  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVS 120

Query: 121 EDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 180
           E EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E+INGK KMEGS+VP
Sbjct: 121 EAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVP 180

Query: 181 LVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSY 240
           LVVKWADTE+ER  R+ QKAQS  + + N D  +PSLFGA+P+GYVPPYNGYGY  PG+Y
Sbjct: 181 LVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPGTY 240

Query: 241 GLMQYHLPPMQNQSGFPNMIPQLNQG--NAMRGIPPD-LGPGMATRNYGMPPASYVGSAY 300
           G   Y LPP+QNQ+ F NMI Q NQG  NA++G  PD + P +A RN+ MPP +Y+GS Y
Sbjct: 241 G---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGY 300

Query: 301 PGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLF 360
           P + G   P AYP G++SP  +SSSPG    +     S    +G  S  Q EGP GANLF
Sbjct: 301 PAMRGHPFPFAYPRGIVSPRPLSSSPG----SISPGMSTPLGIGLSSVVQTEGPEGANLF 360

Query: 361 IYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 404
           IY+IP+EFGD ELA +F++FG VLSAKVFVDK +GVSKCFG +S+D
Sbjct: 361 IYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397

[Close]

BLAST of Clc09G06800 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 474.9 bits (1221), Expect = 7.7e-134
Identity = 254/412 (61.65%), Postives = 309/412 (75.00%), Query Frame = 0


Query: 11  ESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPS 70
           E + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++K TRA RGCCF+ CP+
Sbjct: 3   EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62

Query: 71  RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQ 130
           R++ADK +N+ HNKKTLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV  LFS+
Sbjct: 63  REDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSE 122

Query: 131 YGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEK 190
           YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG++VPL+VKWADTEK
Sbjct: 123 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 182

Query: 191 ERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPM 250
           ERQAR+  K QS  S +   D Q+PS+FGA+P+ YVPPYNGYGY  PG+YG   Y LPP+
Sbjct: 183 ERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPI 242

Query: 251 QNQSGFPNMI-PQLNQGNAMRG------IPPDLGPGMATRNYGMPPASYVGSAYPGVPGL 310
           Q Q  F N+I P    G A++G      +PP L P    RN+     +Y      G  GL
Sbjct: 243 QTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY------GYHGL 302

Query: 311 QHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQ 370
           Q+PMA+P GM+ P +  ++  PG    G   S  SSL      Q EGP GANLFIY+IP+
Sbjct: 303 QYPMAFPRGMIPPRLPLTTVSPGISNNG--TSIPSSL------QTEGPAGANLFIYNIPR 362

Query: 371 EFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITKL 416
           EF D ELA +F+ FG+VLSAKVFVDK +G+SKCFGF+SYDS  AAQ+AI  +
Sbjct: 363 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391

[Close]

BLAST of Clc09G06800 vs. TAIR 10
Match: AT1G03457.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 467.2 bits (1201), Expect = 1.6e-131
Identity = 254/421 (60.33%), Postives = 309/421 (73.40%), Query Frame = 0


Query: 11  ESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPS 70
           E + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++K TRA RGCCF+ CP+
Sbjct: 3   EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62

Query: 71  RQEADKAVNACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSE 130
           R++ADK +N+ HNKKTLPGASSPLQVKYADGELERL         EHKLF+GMLPKNVSE
Sbjct: 63  REDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSE 122

Query: 131 DEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPL 190
            EV  LFS+YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG++VPL
Sbjct: 123 TEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPL 182

Query: 191 VVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYG 250
           +VKWADTEKERQAR+  K QS  S +   D Q+PS+FGA+P+ YVPPYNGYGY  PG+YG
Sbjct: 183 IVKWADTEKERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG 242

Query: 251 LMQYHLPPMQNQSGFPNMI-PQLNQGNAMRG------IPPDLGPGMATRNYGMPPASYVG 310
              Y LPP+Q Q  F N+I P    G A++G      +PP L P    RN+     +Y  
Sbjct: 243 ---YMLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY-- 302

Query: 311 SAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEGPPGA 370
               G  GLQ+PMA+P GM+ P +  ++  PG    G   S  SSL      Q EGP GA
Sbjct: 303 ----GYHGLQYPMAFPRGMIPPRLPLTTVSPGISNNG--TSIPSSL------QTEGPAGA 362

Query: 371 NLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAITK 416
           NLFIY+IP+EF D ELA +F+ FG+VLSAKVFVDK +G+SKCFGF+SYDS  AAQ+AI  
Sbjct: 363 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 400

[Close]

BLAST of Clc09G06800 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 160.2 bits (404), Expect = 4.2e-39
Identity = 107/307 (34.85%), Postives = 164/307 (53.42%), Query Frame = 0


Query: 15  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEA 74
           +   +VKLFVG VP+  TE ++   F++   V EV +I+DK T   +GCCFV   + ++A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174

Query: 75  DKAVNACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEDEVSGLFSQY 134
           D+A+ A HN+ TLPG + P+QV+YADGE ER   LE KLF+G L K  +E EV  +F Q+
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234

Query: 135 GTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKE 194
           G ++D+ ++R   + S+GC F+KY +K+ A+AA++ +NG   M G + PL+V++A+ ++ 
Sbjct: 235 GHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRP 294

Query: 195 RQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQ---YHLP 254
           +     + A                    + LG  P +   G +   ++G       H  
Sbjct: 295 KPGESREMAP------------------PVGLGSGPRFQASGPRPTSNFGDSSGDVSHTN 354

Query: 255 PMQNQSGFPNMIPQLNQGNAMRGIPPDLG--PGMAT--RNYGMPPASYVGSAYPGVPGLQ 312
           P +  +   N+ P  N G  +RG   D    PG AT   N G P   Y      GVP L 
Sbjct: 355 PWRPATS-RNVGPPSNTG--IRGAGSDFSPKPGQATLPSNQGGPLGGY------GVPPL- 393

The following BLAST results are available for this feature:

BLAST of Clc09G06800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900154.1	1.1e-227	95.29	RNA-binding protein BRN1 [Benincasa hispida]	[more]
KAG6575869.1	1.1e-227	92.43	RNA-binding protein BRN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008451423.1	7.0e-222	94.38	PREDICTED: RNA-binding protein BRN1 [Cucumis melo]	[more]
XP_004148884.1	9.2e-222	94.38	RNA-binding protein BRN1 [Cucumis sativus] >KGN44838.1 hypothetical protein Csa_...	[more]
XP_022953846.1	7.8e-221	93.66	RNA-binding protein BRN1-like [Cucurbita moschata]	[more]

BLAST of Clc09G06800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFS6	1.0e-151	66.90	RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1	[more]
Q8GZ26	1.1e-132	61.65	RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1	[more]
A0JM51	4.5e-62	35.83	CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1	[more]
Q08E07	4.6e-59	35.60	CUGBP Elav-like family member 3 OS=Bos taurus OX=9913 GN=CELF3 PE=2 SV=1	[more]
Q9IBD1	7.9e-59	36.19	CUGBP Elav-like family member 3 OS=Danio rerio OX=7955 GN=celf3 PE=2 SV=2	[more]

BLAST of Clc09G06800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRF9	3.4e-222	94.38	RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1	[more]
A0A0A0K5R5	4.4e-222	94.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1	[more]
A0A6J1GP82	3.8e-221	93.66	RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4...	[more]
A0A6J1JX41	1.1e-217	92.72	RNA-binding protein BRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111488257 PE=4 S...	[more]
A0A5A7UR22	1.5e-217	90.56	RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Clc09G06800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03110.1	7.4e-153	66.90	RNA-binding protein-defense related 1	[more]
AT4G03110.2	5.0e-149	67.49	RNA-binding protein-defense related 1	[more]
AT1G03457.1	7.7e-134	61.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G03457.2	1.6e-131	60.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G16280.2	4.2e-39	34.85	RNA binding;abscisic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 20..35 score: 30.62 coord: 113..128 score: 32.71 coord: 169..186 score: 34.26 coord: 128..140 score: 52.82
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 355..429 e-value: 2.6E-10 score: 50.3 coord: 21..97 e-value: 1.1E-16 score: 71.5 coord: 109..184 e-value: 5.4E-17 score: 72.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 110..172 e-value: 3.0E-16 score: 59.0 coord: 22..86 e-value: 4.3E-13 score: 48.9 coord: 356..415 e-value: 3.4E-10 score: 39.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 108..188 score: 16.107859
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..101 score: 13.600715
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 354..442 score: 13.140219
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 330..417 e-value: 1.6E-16 score: 62.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..105 e-value: 8.4E-25 score: 88.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 106..197 e-value: 5.6E-24 score: 86.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..344
None	No IPR available	PANTHER	PTHR24012:SF844	RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED	coord: 14..415
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 14..415
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 21..97 e-value: 7.8289E-39 score: 133.827
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 109..184 e-value: 8.45384E-35 score: 123.041
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 108..414
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G06800.2	Clc09G06800.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding