Clc09G06780 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G06780
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionU1 small nuclear ribonucleoprotein C
LocationClcChr09: 5300853 .. 5305098 (-)
RNA-Seq ExpressionClc09G06780
SyntenyClc09G06780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCCGAGTCGTATATATACGAAACGAACCAAACCAATCAGCTGAATTAAAAGCTGAATCGAAAATAAACTTAATATTTTTTTTTTAGCGAAAAGACTAGAAGCTTCTCGCTCTTCTTCTCTTTCTCGCAGAGTCGCTGATAGGGTTTTTATTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTCTACAGCGCTATGCCTCGGTGCGTTCTTCCATATCCTTCTTCGTCTAAGCTTCATTATTTTATCCTTCAATCAATTTATACACCTCTCCATTTCTCTCTCTACATAGTCAGTGATGTGATCTTGTTGTGTATATGCAGGTATTATTGTGACTATTGCGATACATATCTGACCCATGATTCTGTAAGTCCTCTTCTTATATTCGGCTGACAATGCCATTTCCTTTTCGTCTCATTACTGCCCACCTTTTCTTTTTCTTCTTTTTCATTTTGGGGGTTTCTTCGTTGATGCTGCAGTTCCTTGTCTTTATGTAGGATAGTGTTTTGTGGTTAATGATTTTCAGTTTTTTTTAGAGGAGAAACATTTCATTGATAAAATGAAATGGGGGAGACCCACCCCCAATAGATTTTCAATTGGAAACTAAATAAGAAAGGCTAAAACTCTTAAAAGGGTGCTTAGATTTGCACCAGTTCAATCCAGTAGACTGAACTAAATTCATGAAACTATCGAACCAAGTAGAGGAATCTCTAAAGAGATGCTTATTACGCTCGCCCCATAATGTCTAGAGAAATGCATGCAATATGGCGAATCAAATAGTCTTCTTTGTACCATTAAATGGATGGCCACCAAAAGAGATGAATATTGTCAGAGCTGGCTAATGACCGATCAAAGGCATCCAGAATAATATGACAAAAATGAGAGGCAAAAGAACAATGCATAAATAGACAAGCAGGGACTCGAAATGGCTCTGACACAAAACACACCAAGATGGAGAGATAGACATATAAAGCATACGATGTTGAAGACTATCGGCAGTATTGATGGCACCCAGGCTAAGCTCCCATAAGAAAATTTTTATTTTCTTAGGATAATGCTCCATCCAAATAATACAATATAGATCCTTTGCAGGAGGATCCGTAGTGTCTAGCAAGTCATCCATAAGAGATTTCACAGAAGAAGATGAAGATGGGTCAATAGTCCACCTCTATCAATCAGGAGAAGCACAAATTTTGACAGTGAACAACTTAGATAGGGAAGCCCACTCTATAGTTTCAAGCTCATTAAGATTCCAACCAAGACGTGAATCCCCTGCTTCCGTATCCGCAATCCATACATTTGCCACCTTAATATCAGGATAATGAGCAAGGCGAAACAACCTGGGGAACACCATGGAGAGGATATTGATTTGCAATTTTGAATGCACATATCAGCTGTTCGAATAAATTGTAGGAAAATTTGGATTGATGACTTTGGTTGCTGTTGGGATTGGATTGAATGATGGATCAAATTGACTGTTTGTTGTATATATATGATGTTTGCGTGCATAAATGTATTTTAAGAGAAGGTAGTACTTATGTTGGTAATTGAAAAGTCACAATGTTAATGACAAGAAGGCTTCCTACTTGACTTGAATCTACAGAAGCAAATAATTGTGAAAAATTTTCGGAGAGAGCACTCCAAGAAGCTGTATAGTTTTTGTCATAGTGCTTTTCTCCCTCTATTTTTTGAGGCTATGATATATTTTACACCACAGAACTTGAACCACAGAACCACCATAGAACCACCATGGACAAGGAAGAAAGTGAGCGTAGAGGCTATTGGGTCAAACTATTGTGACAACTTACTTAAGATTTAAAATTCTATGACTTTCCTTAGTAGTCTAATGTCGTGGGGTGAGGTGGTTGTGGCTTGATGTTATTTGAGGTGTCCAAAAGCTTGACACTTGATATCCAGAAAAAGTAAAAAGAAAAAGAAAGAAGCCCGAAACCATGGCTACTATTTTTAACTCTTAGTTTCAAGCGGAATGTGTGGAATTTTTTGACATGTTTTTGTCATTTATATTGAGTTGGTGAATGTTTAATTGTTGCTCATATTTATTTTTCTTTTTTTGGTGTTTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATATTGCTCACGTCTCAATTTAGAGTATGATTCCCTCTATGATTCCCTATTCCGAGGAGGTTGAGCTCTTTGGGCCAGTTTAGAAATTGAATTTAATAGTAGTTTTATGTTTTTAAGAACATGCCATTTTCAAACTGAAAAGAATTTGATTGGTTTCTTGGTTATAGTTCTAGAAACACTTATAAAGGGGAAAAGTTAACTGTTAGAGGTAAGATTTTATTGTTTTCTAGAGGTTGCTTGCTGTTTACTGAAATACGTAAAGATTATGATTAGTATCTTTAAGTGTATTGTAATTGTAACTTTCATTATCTATAAAAGGGCAAGATCTTAAGAACTGTGGAAATATTAAAAATATCTTTTCATTCATTCATCCCATAAGAACTTTCTTTTTTTAAGAAAAAAGACATTTTGAATTTTAAAGAACAAACGAACAACAAATTTTTAGTTCTTTATTCATGGATGCACTCCAGGCAAACGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCTGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCGGTAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCGAGACCTATTCCTGGTGCTCCAGGTAATTTATAGATCCGATATGACTCATATGTAGCAATTTTCTTCCCTTTGACTTTGATTGTGTTATTTCACAATTTGCATTTCACACTACTAAAACCACCTTGTTATGCTTTTGACTCAGTAAAAAACTTAAAATAGTCAAAGTAATAATATACAGCTTGAATATTGGAGATATTAGACACAATAAGTGCCAAAGTAGAATTTGGCATATCTCTGTGTGGTTAAAATTGTTTCCATTGGTACCTAAATGATGTCTAGTCTATTGTTTGAACAAACAAAAGATGAAACTTCGTTCGAACGTGTGACATGGAAGATGATGAGAGGGATGTAGATTTTCCATGTCAGGTTCTAATGAAGTTTCATCTTTAGCTTGTTGAAAGAAAGGAATAAACATTTCAATAAAGGAAATCATTTTAACCGGATATAGCTACTATTATCTCTTGGAGCTGCTTATTCAACTGAACCTCAAAACTTCAATTTTTCAGTTTTATGCTTTAGTAAACCAAATCAACCAACTAGTATACTTCAAACCAACCAAACCGACTCATGTTGTCATTACTGAATGGAATTTAGATGTAAGTTTGTAACCAATGCAACAGGTATTTAGCGTATGTATCAAATTGATTGAACTCCCCTCCTCTATCATTGTAGGATATGTACCTGCTCCTACAATGCCACCTATGATGGGCCCGCCCGGAGCTCCTATGCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCATCTTCAACCAATGGTGCACCATTGGCTGCACCATCGATGTATCAAGCAAATCCAACAGCACCAGGAAGCGGAGGGTATGATAGTTTCACCACCATGGCTCAACCTTCTGAGTCTAACCATTAGAGCTTCTACTTGTGCTGTTTGTGTATGATATCCAAAGCTCTTCTAATGCAAATTGTGACTCAACGTTCTTAAAAAATCTGAAGAAAAATTTGGGGCCTTTGAGATTTAATGTAGAAAAGTTCTTTCCAAGTAAGCAAAGGGAATAATTTTGGTGGTTGATACTTGATTCCTTGCTACTTGTTTGGAGGTAGAATATGAAGTGTGATTATATGGTTAAATGGGAAATTATGAATCCGTTAACGGTTTCGTTTTTAGTTTTTTGTTTGTAATTTTTAATTTCAGGAATCGAATGTATTTTATTTGCTGTCCATTCTAATTTGCTGTCTATTTGAAGTGTCCCAACTATGAAAACAGTGAGACAATTTCTAGGTTGTGATTTTTCTTTTACTTTTGAGGGCATCTTTGACCAAATAAGAAAGCTCATAAGATATTAAATTATAGGTTAATGGCCATATGTTAAATTCATTTTTTTTATAAGATCTTCATTTTGTCTA

mRNA sequence

AAAACCCGAGTCGTATATATACGAAACGAACCAAACCAATCAGCTGAATTAAAAGCTGAATCGAAAATAAACTTAATATTTTTTTTTTAGCGAAAAGACTAGAAGCTTCTCGCTCTTCTTCTCTTTCTCGCAGAGTCGCTGATAGGGTTTTTATTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTCTACAGCGCTATGCCTCGGTATTATTGTGACTATTGCGATACATATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCTGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCGGTAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCGAGACCTATTCCTGGTGCTCCAGGATATGTACCTGCTCCTACAATGCCACCTATGATGGGCCCGCCCGGAGCTCCTATGCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCATCTTCAACCAATGGTGCACCATTGGCTGCACCATCGATGTATCAAGCAAATCCAACAGCACCAGGAAGCGGAGGGTATGATAGTTTCACCACCATGGCTCAACCTTCTGAGTCTAACCATTAGAGCTTCTACTTGTGCTGTTTGTGTATGATATCCAAAGCTCTTCTAATGCAAATTGTGACTCAACGTTCTTAAAAAATCTGAAGAAAAATTTGGGGCCTTTGAGATTTAATGTAGAAAAGTTCTTTCCAAGTAAGCAAAGGGAATAATTTTGGTGGTTGATACTTGATTCCTTGCTACTTGTTTGGAGGTAGAATATGAAGTGTGATTATATGGTTAAATGGGAAATTATGAATCCGTTAACGGTTTCGTTTTTAGTTTTTTGTTTGTAATTTTTAATTTCAGGAATCGAATGTATTTTATTTGCTGTCCATTCTAATTTGCTGTCTATTTGAAGTGTCCCAACTATGAAAACAGTGAGACAATTTCTAGGTTGTGATTTTTCTTTTACTTTTGAGGGCATCTTTGACCAAATAAGAAAGCTCATAAGATATTAAATTATAGGTTAATGGCCATATGTTAAATTCATTTTTTTTATAAGATCTTCATTTTGTCTA

Coding sequence (CDS)

ATGCCTCGGTATTATTGTGACTATTGCGATACATATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCTGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCGGTAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCGAGACCTATTCCTGGTGCTCCAGGATATGTACCTGCTCCTACAATGCCACCTATGATGGGCCCGCCCGGAGCTCCTATGCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCATCTTCAACCAATGGTGCACCATTGGCTGCACCATCGATGTATCAAGCAAATCCAACAGCACCAGGAAGCGGAGGGTATGATAGTTTCACCACCATGGCTCAACCTTCTGAGTCTAACCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAPTMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSGGYDSFTTMAQPSESNH
Homology
[Close]
BLAST of Clc09G06780 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 372.1 bits (954), Expect = 3.0e-99
Identity = 187/196 (95.41%), Postives = 192/196 (97.96%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRP+PGAPGY+PAP
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGAPMPGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PSMYQANP APGSG
Sbjct: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180

Query: 181 GYDSFTTMAQPSESNH 197
           GY+SFTTMAQPSE NH
Sbjct: 181 GYESFTTMAQPSEPNH 196

[Close]
BLAST of Clc09G06780 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 2.8e-97
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGY+P P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGAP+PGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPS YQANP APGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQP-SESNH 197
           GYDSFT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Clc09G06780 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 364.8 bits (935), Expect = 4.8e-97
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGY+P P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGAP+PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPS YQANP APGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQP-SESNH 197
           GYDSFT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Clc09G06780 vs. NCBI nr
Match: KAG6593155.1 (U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.8 bits (917), Expect = 5.8e-95
Identity = 181/195 (92.82%), Postives = 184/195 (94.36%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG  PGLMPGIRPPV PRP+PGAPGY+P P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGVPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGA MPGQVN+PSRPPPPAPIPGS PQPSSTNGAPL AP  YQANP APGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQPSESN 196
           GYDSFTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

[Close]
BLAST of Clc09G06780 vs. NCBI nr
Match: XP_023515032.1 (U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 182/195 (93.33%), Postives = 184/195 (94.36%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGY+P P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGA MPGQVNIPSRPPPPAPIPGS  QPSSTNGAPL AP  YQANP APGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNIPSRPPPPAPIPGSTQQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQPSESN 196
           GYDSFTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

[Close]
BLAST of Clc09G06780 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-66
Identity = 150/215 (69.77%), Postives = 163/215 (75.81%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMP--GAAP-----GLMPGIRPPVLPR 120
            AAFQQVGAAYNQHL+       RPRLPVLPTP MP  G+AP      L+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PIPGAPGYVPAPTMPPMMGPPGA---PMPGQVNIPSRPP----PPAPIPGSAPQPSSTNG 180
           P+PGAPGY+PAP MP MM PPGA   PMP   ++P RPP    PPA +PGS   P+S   
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGA 180

Query: 181 APLAAPSMYQANPTAPGSGGYDSFTTMAQPSESNH 197
             +    MYQANP  P SGG+DSF   AQ  E+NH
Sbjct: 181 PSMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

[Close]
BLAST of Clc09G06780 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-50
Identity = 137/230 (59.57%), Postives = 151/230 (65.65%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGAAP--GLMPGIRPPVLPRP---- 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP   P   LMPG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 IPGAPGYVPAPTMPP-MMGPPGAPMPGQVNIPSRPP-------PPAPIPGSAPQPSS-TN 180
            PGAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

Query: 181 GAPL----AAPSMYQANPTAPG---SGGYDSFTTMAQ-------PSESNH 197
           GAP+    A P++YQANP AP    SG   +  T  Q       PSE NH
Sbjct: 181 GAPIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

[Close]
BLAST of Clc09G06780 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-49
Identity = 140/233 (60.09%), Postives = 153/233 (65.67%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGA---APG--LMPGIRPPVLPRP- 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP     APG  LMPG+RPP+LP P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 120

Query: 121 IPGAPGYVPA---PTMPP-MMGPPGAPMPGQVNIPSRPP-------PPAPIPGSAPQPSS 180
           IPG PG  P    P  PP  M  PGAP PG +  P  PP        P P P + P P+S
Sbjct: 121 IPGYPGGPPTMLQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 180

Query: 181 -TNGAPL----AAPSMYQANPTAPG---SGGYDSFTT-------MAQPSESNH 197
              GAP+    A P++YQ NP AP    SG   +  T        AQPSE NH
Sbjct: 181 GVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

[Close]
BLAST of Clc09G06780 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.5e-49
Identity = 121/198 (61.11%), Postives = 134/198 (67.68%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPIPGAPGYVPA 120
              +QQVGA +NQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMGPPGAPM-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAA 180
           P +P MM PPGAP+ P   N   RPP  APIPG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSMYQANPTAPGSGGYDS 185
           P  Y  NP AP SG +++
Sbjct: 181 PPPYHTNPAAPPSGNFNN 190

[Close]
BLAST of Clc09G06780 vs. ExPASy Swiss-Prot
Match: A8XW44 (U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19656 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19
Identity = 73/151 (48.34%), Postives = 86/151 (56.95%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ       +
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ-----TAR 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRP---IPGAPGYV 120
           A A  ++  A  +  +G  P  PV   P+M G  PG MP + P   P P    PGAPG  
Sbjct: 61  AFATNRMHGAVPRTTMGMAPVPPVGHHPMM-GGPPG-MPMMAPRPFPGPPVGFPGAPGLA 120

Query: 121 PAPTMPPM--MGPPGAPMPGQVNIPSRPPPP 147
           P P  PPM   GPPG P       P  P PP
Sbjct: 121 PFPG-PPMGLAGPPGMP-------PMMPRPP 136

[Close]
BLAST of Clc09G06780 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGY+P P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGAP+PGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPS YQANP APGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQP-SESNH 197
           GYDSFT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Clc09G06780 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGY+P P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGAP+PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPS YQANP APGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQP-SESNH 197
           GYDSFT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Clc09G06780 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGY+P P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGAP+PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPS YQANP APGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQP-SESNH 197
           GYDSFT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Clc09G06780 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.1e-94
Identity = 181/195 (92.82%), Postives = 184/195 (94.36%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGY+P P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGA MPGQVN+PSRPPPPAPIPGS  QPSSTNGAPL AP  YQANP APGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQPSESN 196
           GYDSFTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

[Close]
BLAST of Clc09G06780 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.8e-94
Identity = 181/195 (92.82%), Postives = 184/195 (94.36%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYVPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGY+P P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPTAPGSG 180
           TMPPMM PPGA MPGQVN+PSRPPPPAPIPGS PQ SSTNGAPL AP  YQANP APGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQLSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDSFTTMAQPSESN 196
           GYDSFTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

[Close]
BLAST of Clc09G06780 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 4.6e-50
Identity = 121/198 (61.11%), Postives = 134/198 (67.68%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPIPGAPGYVPA 120
              +QQVGA +NQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMGPPGAPM-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAA 180
           P +P MM PPGAP+ P   N   RPP  APIPG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSMYQANPTAPGSGGYDS 185
           P  Y  NP AP SG +++
Sbjct: 181 PPPYHTNPAAPPSGNFNN 190

The following BLAST results are available for this feature:
BLAST of Clc09G06780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899936.13.0e-9995.41U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida][more]
XP_004148886.12.8e-9794.92U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ... [more]
XP_008451425.14.8e-9794.92PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ... [more]
KAG6593155.15.8e-9592.82U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_023515032.11.7e-9493.33U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo][more]
BLAST of Clc09G06780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F6HQ261.2e-6669.77U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0... [more]
C5XYW41.6e-5059.57U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260... [more]
C5XZK61.3e-4960.09U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880... [more]
Q56XE46.5e-4961.11U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312... [more]
A8XW441.4e-1948.34U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19... [more]
BLAST of Clc09G06780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5151.3e-9794.92U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ... [more]
A0A5A7UNW22.3e-9794.92U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS922.3e-9794.92U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=... [more]
A0A6J1KWY51.1e-9492.82U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890... [more]
A0A6J1H7P81.8e-9492.82U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
BLAST of Clc09G06780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G03120.14.6e-5061.11C2H2 and C2HC zinc fingers superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 1.4E-12
score: 57.8
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 5.3E-22
score: 77.3
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..195
e-value: 5.7E-40
score: 136.3
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..180
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..169
score: 11.887905
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..61
e-value: 4.5E-30
score: 105.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..196
NoneNo IPR availablePANTHERPTHR31148:SF2U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..180
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 12.522273
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G06780.1Clc09G06780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000395 mRNA 5'-splice site recognition
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030627 pre-mRNA 5'-splice site binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding