Clc09G06640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G06640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein no-on-transient A-like
Location	ClcChr09: 5188889 .. 5189770 (+)
RNA-Seq Expression	Clc09G06640
Synteny	Clc09G06640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAACACGCCAAAACCAAAAGGTCCCAAAAGAAATTCAAAGGTCATCAATGGCGGCCGAAACTCAAACGCATCTTCCTACTTTTCTCTATTTATATAATATAAATTTCAATCAATTACACATTATTCCTTCATCTCCAATTTCTTCCATTCTCTTCTTTTATCAAACACAACGCCCAAAAATGGCTGCCGTCAAATCCCTACTTTCATTAGCTCTTATCGCCCTTCTGTTCTTCTCCGAATCCCTAGCCACTTCTGCCGCCAATCGCGGCGGCGCTTCCAATTCTCTTACCGGAATGCTCCGCCGGAACATCCTTCACACGCCGGTTCATCAAATTGCAGATAACAATGTCGAGTCCTCTACCGAACTGAAGATGAATGCTCATATCAAAGCTAAAGGGGGGCGGATTCGACCTATAGCGACTGGCGCTGGCACTGGCAGCCGTAAATCGGCGGCGAATCGGAGCCGAGTCGCTTCTTTTGGCTTTGGATTTCTGCTCTTCTTTTTGGGATTGTTCTTGTGAAATCTGATTCATTCGTTTCTGTAAAAATTGGGATTTGTTTTGTTTCCTTCGTTATATATATTTTATTTTTATTTGATGAATGCCCAATTTGTTTTAACTCGAAAAATAGCTTAGAAAGTTAACTATTTTGAATTTTGGCTGTTGGAAATTTCTTCCCTATTATATCTCTATTGTATCTGTTTCACATTTATAATTATACCTTAAAAATTCTTATTTTTTTCAAATATATTACTTATTGTTCTAAGTATAATTGGTCCACAATTATGTTTTATTTTGAATTATGAGACCACAACATTGGAAACACAAGTATTAGTAGCTCTGTGTAAAATTTTATATATATATATAAAAAAGTATCGAC

mRNA sequence

TGAAAACACGCCAAAACCAAAAGGTCCCAAAAGAAATTCAAAGGTCATCAATGGCGGCCGAAACTCAAACGCATCTTCCTACTTTTCTCTATTTATATAATATAAATTTCAATCAATTACACATTATTCCTTCATCTCCAATTTCTTCCATTCTCTTCTTTTATCAAACACAACGCCCAAAAATGGCTGCCGTCAAATCCCTACTTTCATTAGCTCTTATCGCCCTTCTGTTCTTCTCCGAATCCCTAGCCACTTCTGCCGCCAATCGCGGCGGCGCTTCCAATTCTCTTACCGGAATGCTCCGCCGGAACATCCTTCACACGCCGGTTCATCAAATTGCAGATAACAATGTCGAGTCCTCTACCGAACTGAAGATGAATGCTCATATCAAAGCTAAAGGGGGGCGGATTCGACCTATAGCGACTGGCGCTGGCACTGGCAGCCGTAAATCGGCGGCGAATCGGAGCCGAGTCGCTTCTTTTGGCTTTGGATTTCTGCTCTTCTTTTTGGGATTGTTCTTGTGAAATCTGATTCATTCGTTTCTGTAAAAATTGGGATTTGTTTTGTTTCCTTCGTTATATATATTTTATTTTTATTTGATGAATGCCCAATTTGTTTTAACTCGAAAAATAGCTTAGAAAGTTAACTATTTTGAATTTTGGCTGTTGGAAATTTCTTCCCTATTATATCTCTATTGTATCTGTTTCACATTTATAATTATACCTTAAAAATTCTTATTTTTTTCAAATATATTACTTATTGTTCTAAGTATAATTGGTCCACAATTATGTTTTATTTTGAATTATGAGACCACAACATTGGAAACACAAGTATTAGTAGCTCTGTGTAAAATTTTATATATATATATAAAAAAGTATCGAC

Coding sequence (CDS)

ATGGCGGCCGAAACTCAAACGCATCTTCCTACTTTTCTCTATTTATATAATATAAATTTCAATCAATTACACATTATTCCTTCATCTCCAATTTCTTCCATTCTCTTCTTTTATCAAACACAACGCCCAAAAATGGCTGCCGTCAAATCCCTACTTTCATTAGCTCTTATCGCCCTTCTGTTCTTCTCCGAATCCCTAGCCACTTCTGCCGCCAATCGCGGCGGCGCTTCCAATTCTCTTACCGGAATGCTCCGCCGGAACATCCTTCACACGCCGGTTCATCAAATTGCAGATAACAATGTCGAGTCCTCTACCGAACTGAAGATGAATGCTCATATCAAAGCTAAAGGGGGGCGGATTCGACCTATAGCGACTGGCGCTGGCACTGGCAGCCGTAAATCGGCGGCGAATCGGAGCCGAGTCGCTTCTTTTGGCTTTGGATTTCTGCTCTTCTTTTTGGGATTGTTCTTGTGA

Protein sequence

MAAETQTHLPTFLYLYNINFNQLHIIPSSPISSILFFYQTQRPKMAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESSTELKMNAHIKAKGGRIRPIATGAGTGSRKSAANRSRVASFGFGFLLFFLGLFL

Homology

[Close]

BLAST of Clc09G06640 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-26
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA+KSL+S++L+ALLFFSESL+TSAAN  GASNS+T MLRRNIL T  H+IAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 105 TELKMNAHIKAKG-GRIRPIATGAGTGSRKSAANRSRVASFGFGFLLFFLGLFL 158
           +E KMN  IK  G GR RPI  G GTG+R SAANRSRV SFG GFLLFF GL L
Sbjct: 61  SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of Clc09G06640 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-26
Identity = 78/115 (67.83%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA+KSLL ++L+ALLFFSESL+TSAA+  GASNS+TGMLRRN+L T  H+IAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 105 TELKMNAHIK-AKGGRIRPIATGAG-TGSRKSAANRSRVASFGFGFLLFFLGLFL 158
           +E KMN HIK   GGRIRP+A G G TG+RKSAA+RS+VASFG GFLLFF  LFL
Sbjct: 61  SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of Clc09G06640 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-25
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA+KSL+S+AL+ALL FSESL  SA +R G SNSLTGMLRRN+L T  HQIADN+VESS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 105 TELKMNAHIKAKGGRIRPIATGAGTGSRKSAANRSRVASFGFGFLLFFLGLFL 158
            E KMN HIK    R+RP+A    TG+R SAANRSR+AS G G +L  LGLFL
Sbjct: 61  PERKMNVHIKR---RMRPVA----TGTRSSAANRSRIASIGVGSVLVVLGLFL 106

[Close]

BLAST of Clc09G06640 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 9.0e-14
Identity = 66/142 (46.48%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESL-ATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVES 104
           MAA+K+ + ++L+ALLFF E L       RG  SNS+TG+L R IL T  H+ A +NVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 105 STELKM-NAHIK-----------------AKGGR----------IRPIATGAGTGSRKSA 158
           S+E KM N H+K                  +GGR           R    G GTG  KSA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of Clc09G06640 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 9.9e-13
Identity = 61/117 (52.14%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA++ L+S+AL+ALLFFSESL T        S+SLTG+  RNILHT  H+I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 105 TELKMNAHIKAKGGRIRPIATGAGTG-SRKSAANRSRVASFGFGFLL---FFLGLFL 158
            + K N        RIRPI      G   KSA NRSRVASF  G +L    FLGLFL
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

[Close]

BLAST of Clc09G06640 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA+KSL+S++L+ALLFFSESL+TSAAN  GASNS+T MLRRNIL T  H+IAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 105 TELKMNAHIKAKG-GRIRPIATGAGTGSRKSAANRSRVASFGFGFLLFFLGLFL 158
           +E KMN  IK  G GR RPI  G GTG+R SAANRSRV SFG GFLLFF GL L
Sbjct: 61  SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of Clc09G06640 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 78/115 (67.83%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA+KSLL ++L+ALLFFSESL+TSAA+  GASNS+TGMLRRN+L T  H+IAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 105 TELKMNAHIK-AKGGRIRPIATGAG-TGSRKSAANRSRVASFGFGFLLFFLGLFL 158
           +E KMN HIK   GGRIRP+A G G TG+RKSAA+RS+VASFG GFLLFF  LFL
Sbjct: 61  SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of Clc09G06640 vs. ExPASy TrEMBL
Match: A0A1S3BRF6 (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.4e-14
Identity = 66/142 (46.48%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESL-ATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVES 104
           MAA+K+ + ++L+ALLFF E L       RG  SNS+TG+L R IL T  H+ A +NVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 105 STELKM-NAHIK-----------------AKGGR----------IRPIATGAGTGSRKSA 158
           S+E KM N H+K                  +GGR           R    G GTG  KSA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of Clc09G06640 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-13
Identity = 61/117 (52.14%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA++ L+S+AL+ALLFFSESL T        S+SLTG+  RNILHT  H+I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 105 TELKMNAHIKAKGGRIRPIATGAGTG-SRKSAANRSRVASFGFGFLL---FFLGLFL 158
            + K N        RIRPI      G   KSA NRSRVASF  G +L    FLGLFL
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

[Close]

BLAST of Clc09G06640 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 45  MAAVKSLLSLALIALLFFSESLATSAANRGGASNSLTGMLRRNILHTPVHQIADNNVESS 104
           MAA++ L+S+AL+ALLFFSESL T        S+SLTG+  RNILHT  H+I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 105 TELKMNAHIKAKGGRIRPIATGAGTG-SRKSAANRSRVASF 145
            + K N        RIRPI      G   KSA NRSRVASF
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASF 93

The following BLAST results are available for this feature:

BLAST of Clc09G06640 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44886.1	4.6e-26	67.54	hypothetical protein Csa_015765 [Cucumis sativus]	[more]
KAA0068047.1	6.0e-26	67.83	protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no...	[more]
KAG6575859.1	1.7e-25	66.37	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008451666.1	9.0e-14	46.48	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]
KAA0046715.1	9.9e-13	52.14	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3...	[more]

BLAST of Clc09G06640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G06640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAQ7	2.2e-26	67.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]
A0A5A7VLE5	2.9e-26	67.83	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BRF6	4.4e-14	46.48	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]
A0A5D3D3Y6	4.8e-13	52.14	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BT53	1.5e-11	52.48	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P...	[more]

BLAST of Clc09G06640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G06640.1	Clc09G06640.1	mRNA