Clc09G06290 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G06290
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Nucleolar protein 16
Location	ClcChr09: 4866806 .. 4868514 (-)
RNA-Seq Expression	Clc09G06290
Synteny	Clc09G06290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGTTCGGTTCGGTTAGTTAAGTTTTCTAATCACCGAACCGGAAAAACTCGGTTCCTAATTTTTTTCCACAACCCCTCAGGACAAAAACCCTACGAAATCCCAACTGAGCTCTTCATCTTCCACATAGTAAAACCCTAGCCACCAGTTTTCGCCTTCTCCTTCCAATTCACAGAGCCATTGAGAGAGATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCCTTACTCGCCGAACAATTTGAAGAGGATCCAACATGGGATGAGAAAGCAAGTGTCATTGACAACTACAAATCCTTCGGGGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTTCCGCCTTCTCAGCCGACTTCCAATGAACCTGACTTTGTGCTTGATTCTTCCGGTAGCGATGTTGAAGAGGATGGTGAGTTTGAGTTTGAATTTGTTTATCTTTCGGTATTGTTTTAAATTTCAGCTGTGCCTCCTCATGAATCTATCTGGGGTTCTTGGTATTTCTGGATTTGAAAGGAGCGGATTGGTTTGAGGGTAGATAATGTGATGTTTTCAAATTTAAAAGTATATTTTTTTGGATGAAGTTAGTTGGCTTTTAGAAATATGTTGCCTTCTGCCCCAGTTTTAGTGAATTGATCCGCAGTACTGTTAATTGTTTGGTGTTCTTGACCTTCAAGGCTTCAAAGCTTAGCAAAGACCACAAATTTCTGAATAGCTTTAAGAAGTGGTAAATTTCCATTGAACCAAAATTGCTTCCAAACTGATTGGATTTGGGTCATTGATCATGTTTGGGCAACCTTTTACTGGATAGGTATATGTGAACTGATAATAAAATGAAATATGTTAAATCGTCCATCAATCCAAAAGCTTAAACGGACGGATTAAGGTAAATTTTATTATATCAATAGTTAAACACTTGTCCTCATTTGTGGTTAATCAATATTAATTGGGAGAAAATGCGCTATAGACATGCTAAATCACTTATCAACTTAAAAACTTAAGCTGATGGTTATTGTAAATTTAATTACATCAATATTTCAACAAAATAGAATAATAATTGAAATGATTTTAATGTCATATTTTGCATGACTGAAGTTTCATGAGGATGCCAATTCAATTTTTTTAGTTGTGTTTCTGATGTGATCGTGTTCTCTCTTTTGTGTTCATTAGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTACAACCGTTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATTGAGAAATATGGAGATGATTACGAGGTAAGTTTCAGTTTTACTTACTTTTGAATCTGAGTAATTGCCTTTGTTTTCTTCTTTTTTTCCTCATTGAAAGTTGTTCTGCAGAGAATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGCTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTTTTTAGATAAGAATCCATTGATATTGATTCGTAAAAAATGAATGCTCCATCTTTCAAATTGTTTTGTAACAAGAGGTGAAAACCCGTTTTGATCAATATTGTAGCAAAAGGTATGATCATGAAATCTTAT

mRNA sequence

gtttggttcggttcggttagttaagttttctaatcaccgaaccggaaaaactcggttcctaatttttttccacaacccctcaggacaaaaaccctacgaaatcccaactgagctcttcatcttccacatagtaaaaccctagccaccagttttcgccttctccttccaattcacagagccattgagagagatgggaaggtctcgaagaaagtacaagagatctcggccaaaagtcaaggtcggcttgcccaaaagacaccccaatgtcttcaagccatccttctgcatgccgccgaagctccgctccttactcgccgaacaatttgaagaggatccaacatgggatgagaaagcaagtgtcattgacaactacaaatccttcggggttatttctaatcctaatttgctcagtgttcgttcccgcactgatcacatcgttgagagcgactctctccaggttccgccttctcagccgacttccaatgaacctgactttgtgcttgattcttccggtagcgatgttgaagaggatgatttgaaaacagcattgggaaagaagcgcaaagatgggaaatctgcacctctacaaccgttgaccacgattcagcgtgttcatgtcggtaggctaattgagaaatatggagatgattacgagagaatgtttatggatacaaagctgaactcaatgcagcattctgctgccactctggagaaactatgcaaaagatatcacagttttttagataagaatccattgatattgattcgtaaaaaatgaatgctccatctttcaaattgttttgtaacaagaggtgaaaacccgttttgatcaatattgtagcaaaaggtatgatcatgaaatcttat

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCCTTACTCGCCGAACAATTTGAAGAGGATCCAACATGGGATGAGAAAGCAAGTGTCATTGACAACTACAAATCCTTCGGGGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTTCCGCCTTCTCAGCCGACTTCCAATGAACCTGACTTTGTGCTTGATTCTTCCGGTAGCGATGTTGAAGAGGATGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTACAACCGTTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATTGAGAAATATGGAGATGATTACGAGAGAATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGCTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTTTTTAGATAAGAATCCATTGATATTGATTCGTAAAAAATGA

Protein sequence

MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRKK

Homology

[Close]

BLAST of Clc09G06290 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 372.9 bits (956), Expect = 1.7e-99
Identity = 187/195 (95.90%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWD+KA VI N
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQP S+EPD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIRKK 196
           HS LDKNPLILIRKK
Sbjct: 181 HSCLDKNPLILIRKK 195

[Close]

BLAST of Clc09G06290 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 177/193 (91.71%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS P S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIR 194
           HS LDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Clc09G06290 vs. NCBI nr
Match: XP_008451586.1 (PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo] >KAA0068000.1 nucleolar protein 16-like [Cucumis melo var. makuwa] >TYK18127.1 nucleolar protein 16-like [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 3.2e-93
Identity = 177/194 (91.24%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIRK 195
           HS LDKNPLIL RK
Sbjct: 181 HSCLDKNPLILTRK 190

[Close]

BLAST of Clc09G06290 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-93
Identity = 176/193 (91.19%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS P S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIR 194
           H  LDKNPLIL R
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Clc09G06290 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 175/193 (90.67%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS P S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKR+DGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIR 194
           HS LDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Clc09G06290 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.9e-94
Identity = 177/193 (91.71%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS P S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIR 194
           HS LDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Clc09G06290 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 177/194 (91.24%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIRK 195
           HS LDKNPLIL RK
Sbjct: 181 HSCLDKNPLILTRK 190

[Close]

BLAST of Clc09G06290 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 177/194 (91.24%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIRK 195
           HS LDKNPLIL RK
Sbjct: 181 HSCLDKNPLILTRK 190

[Close]

BLAST of Clc09G06290 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.6e-93
Identity = 175/193 (90.67%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS P S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKR+DGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIR 194
           HS LDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Clc09G06290 vs. ExPASy TrEMBL
Match: A0A0A0KAV9 (Nucleolar protein 16 OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.9e-92
Identity = 175/195 (89.74%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSDVEEDDLKTAL 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++PD VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDTVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRY 180
           GKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFLDKNPLILIRKK 196
           +S LD NPLIL RK+
Sbjct: 181 NSCLDSNPLILTRKR 191

[Close]

BLAST of Clc09G06290 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 250.0 bits (637), Expect = 1.6e-66
Identity = 123/195 (63.08%), Postives = 157/195 (80.51%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDN 60
           M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+    ++ P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS-QPTSNEP---DFVLDSSGSDVEEDDL 120
           YKSFGVISNPNLL +R+RTDH+++ DSL VPP  +P +++P   +F    SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKL 180
           KTALGK+RKDGKSAPLQPLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHS ATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSFLDKNPLIL 192
           C RY  + DKNP+++
Sbjct: 181 CTRYQIYKDKNPILV 192

The following BLAST results are available for this feature:

BLAST of Clc09G06290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898931.1	1.7e-99	95.90	nucleolar protein 16 [Benincasa hispida]	[more]
XP_022991747.1	1.4e-93	91.71	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_008451586.1	3.2e-93	91.24	PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo] >KAA0068000.1 nuc...	[more]
XP_023547523.1	5.4e-93	91.19	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_022954094.1	1.6e-92	90.67	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]

BLAST of Clc09G06290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G06290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMQ4	6.9e-94	91.71	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A5A7VLA5	1.5e-93	91.24	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	1.5e-93	91.24	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]
A0A6J1GRW5	7.6e-93	90.67	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A0A0KAV9	2.9e-92	89.74	Nucleolar protein 16 OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=3 SV=1	[more]

BLAST of Clc09G06290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	1.6e-66	63.08	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 111..181 e-value: 5.6E-18 score: 65.8 coord: 3..87 e-value: 8.7E-6 score: 25.9
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G06290.1	Clc09G06290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus