Clc09G05110 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G05110
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein NIM1-INTERACTING 1
Location	ClcChr09: 4038855 .. 4039533 (+)
RNA-Seq Expression	Clc09G05110
Synteny	Clc09G05110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATAAAAGAAAAGAAACGCAAACAGCATGTGAAACTTTTTCAAATTTTATTTATATTATATTATAATTTACACGGAGAATTGGTAAATTGAAGAGAGTTTTTGATTATTTTCTGAAGAGTAATGGAAAACGAGAAACTGCAGCCGCCGCGGGAGAGAATCGCCGAGGAAGAGGAGGAGGTGGAGATGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGAAGGAGTTGATGATCGGGGAGGAGGAGGAGGAAATCGCGGCGGAGAAGAGGAGGAAGAGGATGAAGACGGCGGAAGCGGTGGAGAATCGGTCGACTTGGATTCCGAAGTTCGAGAGAGAGGATTTCGATGAGGAATTTCAGGGGAGAGGGCCGGCTTTGATTCTTCCGAAGCCTTGTAATCTTGTTAAAGAAGACACCGCGGCGGCGATGAAGAAGAAAAAGAAAGTGAAAAATGGAGATGAGTGTTTGGATCTTAATCTCACTCTCTAGTTTCTTTTTTCTTTTCTATTTGGTACACAAGAATTTAATCTGAATTTGAAAGAATGAATAGAGAGTTTACAGTTTTAGGGGAAATTTTGTTTTTTTTTTCTTTTAACTTTAGAAATATCCATTTTTCACCTAATATTTGTTTTTATAGCTAATTCTCC

mRNA sequence

AAAAAATAAAAGAAAAGAAACGCAAACAGCATGTGAAACTTTTTCAAATTTTATTTATATTATATTATAATTTACACGGAGAATTGGTAAATTGAAGAGAGTTTTTGATTATTTTCTGAAGAGTAATGGAAAACGAGAAACTGCAGCCGCCGCGGGAGAGAATCGCCGAGGAAGAGGAGGAGGTGGAGATGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGAAGGAGTTGATGATCGGGGAGGAGGAGGAGGAAATCGCGGCGGAGAAGAGGAGGAAGAGGATGAAGACGGCGGAAGCGGTGGAGAATCGGTCGACTTGGATTCCGAAGTTCGAGAGAGAGGATTTCGATGAGGAATTTCAGGGGAGAGGGCCGGCTTTGATTCTTCCGAAGCCTTGTAATCTTGTTAAAGAAGACACCGCGGCGGCGATGAAGAAGAAAAAGAAAGTGAAAAATGGAGATGAGTGTTTGGATCTTAATCTCACTCTCTAGTTTCTTTTTTCTTTTCTATTTGGTACACAAGAATTTAATCTGAATTTGAAAGAATGAATAGAGAGTTTACAGTTTTAGGGGAAATTTTGTTTTTTTTTTCTTTTAACTTTAGAAATATCCATTTTTCACCTAATATTTGTTTTTATAGCTAATTCTCC

Coding sequence (CDS)

ATGGAAAACGAGAAACTGCAGCCGCCGCGGGAGAGAATCGCCGAGGAAGAGGAGGAGGTGGAGATGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGAAGGAGTTGATGATCGGGGAGGAGGAGGAGGAAATCGCGGCGGAGAAGAGGAGGAAGAGGATGAAGACGGCGGAAGCGGTGGAGAATCGGTCGACTTGGATTCCGAAGTTCGAGAGAGAGGATTTCGATGAGGAATTTCAGGGGAGAGGGCCGGCTTTGATTCTTCCGAAGCCTTGTAATCTTGTTAAAGAAGACACCGCGGCGGCGATGAAGAAGAAAAAGAAAGTGAAAAATGGAGATGAGTGTTTGGATCTTAATCTCACTCTCTAG

Protein sequence

MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRRKRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKPCNLVKEDTAAAMKKKKKVKNGDECLDLNLTL

Homology

[Close]

BLAST of Clc09G05110 vs. NCBI nr
Match: XP_038898983.1 (protein NIM1-INTERACTING 1-like [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-44
Identity = 113/139 (81.29%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRR 60
           MENEKLQP  ERIAEEEEE EMEM  FFALVRNFKEMRDRRRKELMIGEEEE  A EKRR
Sbjct: 1   MENEKLQPAPERIAEEEEEEEMEM--FFALVRNFKEMRDRRRKELMIGEEEEIAAEEKRR 60

Query: 61  KRMKTA-EAVENRSTWIPKFEREDFDEEFQGRGPALILP-KPCNLVKEDTA------AAM 120
           KRMK+A EAVENRSTWIPKFEREDFDEEFQ RG   ILP KP NLVKEDT+      AAM
Sbjct: 61  KRMKSAPEAVENRSTWIPKFEREDFDEEFQVRGQGFILPNKPYNLVKEDTSAAAASTAAM 120

Query: 121 KKKKKVKNGDECLDLNLTL 132
           KKKK VKNGD+CLDLNL L
Sbjct: 121 KKKKNVKNGDDCLDLNLAL 137

[Close]

BLAST of Clc09G05110 vs. NCBI nr
Match: XP_022991628.1 (uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991630.1 uncharacterized protein LOC111488189 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRR 60
           MEN+K QPPRE IAEEEEE E+EME+F+ALVRNFKE+RDR RKE++ G E +E AAEK R
Sbjct: 1   MENQKRQPPRETIAEEEEE-EVEMEKFYALVRNFKEIRDRWRKEVVNG-EGDETAAEKTR 60

Query: 61  KRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKPCNLVKEDT---AAAMKKKKK 120
           KRMKT E V+N+S+WI +FEREDFDE+ Q  G A+ LPK C LVKEDT   AA +KK+KK
Sbjct: 61  KRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPLKKEKK 120

Query: 121 VKNGDECLDLNLTL 132
           V +G +CLDLNL+L
Sbjct: 121 VASGVDCLDLNLSL 132

[Close]

BLAST of Clc09G05110 vs. NCBI nr
Match: KGN45045.1 (hypothetical protein Csa_015768 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 97/142 (68.31%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEE--EEEIAA-E 60
           MEN KLQP  +  AE+  E E EMERFFALVR+ KEMRD+RRKEL IG+E  EEEIAA E
Sbjct: 1   MENGKLQPSPDTTAEDSLEDE-EMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGE 60

Query: 61  KRRKRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKP-CNLVKEDTAAA----- 120
           KRRKRM+ AE VENRSTWIPKFEREDFDEEFQ    + + P P CNLVK DT AA     
Sbjct: 61  KRRKRMRAAEMVENRSTWIPKFEREDFDEEFQAL--STLPPNPCCNLVKRDTTAASTTTT 120

Query: 121 --MKKKKKVKNGDECLDLNLTL 132
             MK KKKVKNGD  LDLNL L
Sbjct: 121 APMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of Clc09G05110 vs. NCBI nr
Match: XP_023547822.1 (uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 88/138 (63.77%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEE---EVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAE 60
           MEN+K QPPR  IAEEEE   E E+EME F+ALVRNFKE+RDR RKE++ G E  E AAE
Sbjct: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNG-EGGETAAE 60

Query: 61  KRRKRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKPCNLVKEDTAAA----MK 120
           K RKRMKT E  +N+S+WI +FEREDFDE+ Q  G A+ LPK C LVKEDT  A    MK
Sbjct: 61  KTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMK 120

Query: 121 KKKKVKNGDECLDLNLTL 132
           K+KKV +G +CLDLNL+L
Sbjct: 121 KEKKVASGVDCLDLNLSL 137

[Close]

BLAST of Clc09G05110 vs. NCBI nr
Match: KAA0058541.1 (protein NIM1-INTERACTING 1 [Cucumis melo var. makuwa] >TYJ96897.1 protein NIM1-INTERACTING 1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 5.7e-30
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRR 60
           MENEK+QP  ER AEE  E E EMERFFALVR+FKEMRD+R KEL +GEEEE    EKRR
Sbjct: 1   MENEKMQPLPERTAEELLE-EEEMERFFALVRSFKEMRDQRWKELNMGEEEE----EKRR 60

Query: 61  KRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKP-CNLVKE---------DTAA 120
           KRMK  + VENRSTWIPKFEREDFDEEFQ    AL LP+P CNL K           T A
Sbjct: 61  KRMKAGKMVENRSTWIPKFEREDFDEEFQ----ALSLPEPCCNLDKRGTRAATTTTTTTA 120

Query: 121 AMKKKKKVKNGDECLDLNLTL 132
           AMK KK+VKNG+  LDLNL L
Sbjct: 121 AMKNKKRVKNGEVSLDLNLAL 132

[Close]

BLAST of Clc09G05110 vs. ExPASy TrEMBL
Match: A0A6J1JVD5 (uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRR 60
           MEN+K QPPRE IAEEEEE E+EME+F+ALVRNFKE+RDR RKE++ G E +E AAEK R
Sbjct: 1   MENQKRQPPRETIAEEEEE-EVEMEKFYALVRNFKEIRDRWRKEVVNG-EGDETAAEKTR 60

Query: 61  KRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKPCNLVKEDT---AAAMKKKKK 120
           KRMKT E V+N+S+WI +FEREDFDE+ Q  G A+ LPK C LVKEDT   AA +KK+KK
Sbjct: 61  KRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPLKKEKK 120

Query: 121 VKNGDECLDLNLTL 132
           V +G +CLDLNL+L
Sbjct: 121 VASGVDCLDLNLSL 132

[Close]

BLAST of Clc09G05110 vs. ExPASy TrEMBL
Match: A0A0A0K5V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 97/142 (68.31%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEE--EEEIAA-E 60
           MEN KLQP  +  AE+  E E EMERFFALVR+ KEMRD+RRKEL IG+E  EEEIAA E
Sbjct: 1   MENGKLQPSPDTTAEDSLEDE-EMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGE 60

Query: 61  KRRKRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKP-CNLVKEDTAAA----- 120
           KRRKRM+ AE VENRSTWIPKFEREDFDEEFQ    + + P P CNLVK DT AA     
Sbjct: 61  KRRKRMRAAEMVENRSTWIPKFEREDFDEEFQAL--STLPPNPCCNLVKRDTTAASTTTT 120

Query: 121 --MKKKKKVKNGDECLDLNLTL 132
             MK KKKVKNGD  LDLNL L
Sbjct: 121 APMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of Clc09G05110 vs. ExPASy TrEMBL
Match: A0A5A7UYI4 (Protein NIM1-INTERACTING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00070 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRR 60
           MENEK+QP  ER AEE  E E EMERFFALVR+FKEMRD+R KEL +GEEEE    EKRR
Sbjct: 1   MENEKMQPLPERTAEELLE-EEEMERFFALVRSFKEMRDQRWKELNMGEEEE----EKRR 60

Query: 61  KRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKP-CNLVKE---------DTAA 120
           KRMK  + VENRSTWIPKFEREDFDEEFQ    AL LP+P CNL K           T A
Sbjct: 61  KRMKAGKMVENRSTWIPKFEREDFDEEFQ----ALSLPEPCCNLDKRGTRAATTTTTTTA 120

Query: 121 AMKKKKKVKNGDECLDLNLTL 132
           AMK KK+VKNG+  LDLNL L
Sbjct: 121 AMKNKKRVKNGEVSLDLNLAL 132

[Close]

BLAST of Clc09G05110 vs. ExPASy TrEMBL
Match: A0A6J1DAZ5 (protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.6e-30
Identity = 88/138 (63.77%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 1   MENEKLQPPRERIAEEEEEVEMEMERFFALVRNFKEMRDRRRKEL--MIGEEEEEIAAEK 60
           MENE L+P     A EEEE EM+ME FFAL+RNFKEMRDRRRKEL  MIG+  E    EK
Sbjct: 1   MENENLRP----AAAEEEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGE---TEK 60

Query: 61  RRKRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKPCNLVKEDT-----AAAMK 120
           +RK+MKTA      STWIP F REDFDE+FQ RGP  +LPKPCNL+KEDT      AA+ 
Sbjct: 61  KRKKMKTAP-----STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAAVA 120

Query: 121 KKKKVKNGDECLDLNLTL 132
           KKK +KN +ECLDLNL L
Sbjct: 121 KKKNMKNDEECLDLNLAL 126

[Close]

BLAST of Clc09G05110 vs. ExPASy TrEMBL
Match: A0A6J1H831 (protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.8e-25
Identity = 83/144 (57.64%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 1   MENEKLQPPRERIA--------EEEEEVEMEMERFFALVRNFKEMRDRRRKELMIG-EEE 60
           ME + L+   +R+A        + EEE EM+ME FFALVRNFKEMRD+RRKELMIG + E
Sbjct: 1   MEKQSLKTTGKRVASAAAAAAVDGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGE 60

Query: 61  EEIAAEKRRKRMKTAEAVENRSTWIPKFEREDFDEEFQGRGPALILPKPCNLVKEDTAAA 120
           +  AAE R+++MKT   VENRS WIP+FEREDFDEEFQ RGPA          KE+ AAA
Sbjct: 61  KAAAAEMRKRKMKT---VENRSAWIPRFEREDFDEEFQVRGPA----------KEEAAAA 120

Query: 121 ----MKKKKKVKNGDECLDLNLTL 132
                KKKKKVKN ++ LDLNL+L
Sbjct: 121 AIATAKKKKKVKNEEDILDLNLSL 131

[Close]

BLAST of Clc09G05110 vs. TAIR 10
Match: AT1G02450.1 (NIM1-interacting 1 )

HSP 1 Score: 41.2 bits (95), Expect = 7.5e-04
Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 15  EEEEEVEMEMERFFALVRNFKEMRDRRRKELMIGEEEEEIAAEKRRKRMKTAEAVENRST 74
           +EEEE E +++ FF L+++++E R RRR+EL       E +   RRK    +   E    
Sbjct: 37  DEEEEEEKKIDTFFKLIKHYQEARKRRREEL------AENSGVVRRK----SNGGERSGI 96

Query: 75  WIPKFEREDFDEEFQGRGPALILPKPCNLVKEDTAAAMKK-KKKVKNGDECLDLNLTL 132
            +P F+ EDF +   G  P L+     +  +E+T    ++ + + +N D+ LDLNL L
Sbjct: 97  VVPAFQPEDFSQCRTGLKPPLMFVS--DHKEENTKVEQEEDQTEERNEDKALDLNLAL 142

The following BLAST results are available for this feature:

BLAST of Clc09G05110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898983.1	4.1e-44	81.29	protein NIM1-INTERACTING 1-like [Benincasa hispida]	[more]
XP_022991628.1	3.2e-33	67.16	uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharac...	[more]
KGN45045.1	2.3e-31	68.31	hypothetical protein Csa_015768 [Cucumis sativus]	[more]
XP_023547822.1	2.6e-30	63.77	uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo]	[more]
KAA0058541.1	5.7e-30	66.67	protein NIM1-INTERACTING 1 [Cucumis melo var. makuwa] >TYJ96897.1 protein NIM1-I...	[more]

BLAST of Clc09G05110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G05110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVD5	1.6e-33	67.16	uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189...	[more]
A0A0A0K5V7	1.1e-31	68.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1	[more]
A0A5A7UYI4	2.8e-30	66.67	Protein NIM1-INTERACTING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1DAZ5	3.6e-30	63.77	protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 S...	[more]
A0A6J1H831	7.8e-25	57.64	protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV...	[more]

BLAST of Clc09G05110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02450.1	7.5e-04	32.20	NIM1-interacting 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..67
None	No IPR available	PANTHER	PTHR33669:SF1	NPR1/NH1-INTERACTING PROTEIN-RELATED	coord: 1..131
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 16..128 e-value: 3.5E-17 score: 63.0
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G05110.1	Clc09G05110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus