Clc09G04845 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G04845
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CCHC-type domain-containing protein
Location	ClcChr09: 3847349 .. 3847651 (+)
RNA-Seq Expression	Clc09G04845
Synteny	Clc09G04845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACCTGACGATCTTTCGGAAGATTGGAGGAAACTTCGTTTAACTAAAGAAGAAAATGATGTTCGAATTGATTATGACTCCCAAATGGACAACATAATTAGCAGGCAGATGGAATATTGTTTAATCAACAAGTTGCTATCCTCACGAAGAATTGTTCTTGGAATCATTAAAAATACGTTCGCAAATGCTTGGAGGTCGAACCTAGAATTCAATGTTGAAGGTTTAGGGAGGAATCTATTTCTGGTCAAGTTTGACACCAAAAAAGATAAAGAAATGGTCATGCGCCTTGGTCCTTAG

mRNA sequence

ATGGCGGAACCTGACGATCTTTCGGAAGATTGGAGGAAACTTCGTTTAACTAAAGAAGAAAATGATGTTCGAATTGATTATGACTCCCAAATGGACAACATAATTAGCAGGCAGATGGAATATTGTTTAATCAACAAGTTGCTATCCTCACGAAGAATTGTTCTTGGAATCATTAAAAATACGTTCGCAAATGCTTGGAGGTCGAACCTAGAATTCAATGTTGAAGGTTTAGGGAGGAATCTATTTCTGGTCAAGTTTGACACCAAAAAAGATAAAGAAATGGTCATGCGCCTTGGTCCTTAG

Coding sequence (CDS)

ATGGCGGAACCTGACGATCTTTCGGAAGATTGGAGGAAACTTCGTTTAACTAAAGAAGAAAATGATGTTCGAATTGATTATGACTCCCAAATGGACAACATAATTAGCAGGCAGATGGAATATTGTTTAATCAACAAGTTGCTATCCTCACGAAGAATTGTTCTTGGAATCATTAAAAATACGTTCGCAAATGCTTGGAGGTCGAACCTAGAATTCAATGTTGAAGGTTTAGGGAGGAATCTATTTCTGGTCAAGTTTGACACCAAAAAAGATAAAGAAATGGTCATGCGCCTTGGTCCTTAG

Protein sequence

MAEPDDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

Homology

[Close]

BLAST of Clc09G04845 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 6   DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANA 65
           +L E+W+  +LT EE+ + +D DS       + +E  LI KLLS R I   ++KNT   A
Sbjct: 5   NLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIA 64

Query: 66  WRSNLE-FNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
           W+ + + F+V+ +G N+FL  F+   D+  ++R+GP
Sbjct: 65  WKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGP 100

[Close]

BLAST of Clc09G04845 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-08
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 6   DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANA 65
           DL E+W+  +LT EE +  ID D+        ++E  L+ KL   R I   ++KNT   A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 66  WR-SNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
           W+  N  F V+ LG NLFL  F    D+  + + GP
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGP 100

[Close]

BLAST of Clc09G04845 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-08
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 5   DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFAN 64
           ++L  DW+K +LT EE+++ +D D     +  + + Y L+ KLL+ R I   ++      
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 65  AWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
           AW+   +  VE +G+NLFL  F  + D   VM+ GP
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGP 99

[Close]

BLAST of Clc09G04845 vs. NCBI nr
Match: XP_042941294.1 (uncharacterized protein LOC122275977 [Carya illinoinensis])

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 5  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFAN 64
          DDL + W KL+LT+EEN V ID ++     +  + +  L+ KL+S R++   +I++T  N
Sbjct: 2  DDLEDRWDKLQLTEEENAV-IDLNAVHLGRVKAKGDKSLVGKLISDRKVNKEVIRSTMNN 61

Query: 65 AWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVM 97
           WR    F    +  NLF+V FD +KDK+ V+
Sbjct: 62 IWRLAGSFTFHDILPNLFVVTFDNQKDKQRVL 92

[Close]

BLAST of Clc09G04845 vs. NCBI nr
Match: XP_018821301.1 (uncharacterized protein LOC108991470 isoform X1 [Juglans regia] >KAF5476534.1 hypothetical protein F2P56_003280 [Juglans regia])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 29/96 (30.21%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 5   DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFAN 64
           +DL + WR+++L+KEE++  I+ +++    ++++ + CLI K+ + R I   II  T A 
Sbjct: 2   EDLEDSWRQMKLSKEESET-IELNAEESEAVTKKGQLCLIGKICTERTIRRNIIAATMAK 61

Query: 65  AWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
            W+ +     + +G NLF++ F+T++DK+ + +  P
Sbjct: 62  IWKLSRPAVFQEVGANLFVIIFNTQEDKQKIEKGKP 96

[Close]

BLAST of Clc09G04845 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.8e-09
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 6   DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANA 65
           +L E+W+  +LT EE+ + +D DS       + +E  LI KLLS R I   ++KNT   A
Sbjct: 5   NLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIA 64

Query: 66  WRSNLE-FNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
           W+ + + F+V+ +G N+FL  F+   D+  ++R+GP
Sbjct: 65  WKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGP 100

[Close]

BLAST of Clc09G04845 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 6   DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANA 65
           DL E+W+  +LT EE +  ID D+        ++E  L+ KL   R I   ++KNT   A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 66  WR-SNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
           W+  N  F V+ LG NLFL  F    D+  + + GP
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGP 100

[Close]

BLAST of Clc09G04845 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 5   DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFAN 64
           ++L  DW+K +LT EE+++ +D D     +  + + Y L+ KLL+ R I   ++      
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 65  AWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
           AW+   +  VE +G+NLFL  F  + D   VM+ GP
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGP 99

[Close]

BLAST of Clc09G04845 vs. ExPASy TrEMBL
Match: A0A2I4EPP4 (uncharacterized protein LOC108991470 isoform X2 OS=Juglans regia OX=51240 GN=LOC108991470 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 29/96 (30.21%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 5   DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFAN 64
           +DL + WR+++L+KEE++  I+ +++    ++++ + CLI K+ + R I   II  T A 
Sbjct: 2   EDLEDSWRQMKLSKEESET-IELNAEESEAVTKKGQLCLIGKICTERTIRRNIIAATMAK 61

Query: 65  AWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
            W+ +     + +G NLF++ F+T++DK+ + +  P
Sbjct: 62  IWKLSRPAVFQEVGANLFVIIFNTQEDKQKIEKGKP 96

[Close]

BLAST of Clc09G04845 vs. ExPASy TrEMBL
Match: A0A2I4EPI2 (uncharacterized protein LOC108991470 isoform X1 OS=Juglans regia OX=51240 GN=LOC108991470 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 29/96 (30.21%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 5   DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFAN 64
           +DL + WR+++L+KEE++  I+ +++    ++++ + CLI K+ + R I   II  T A 
Sbjct: 2   EDLEDSWRQMKLSKEESET-IELNAEESEAVTKKGQLCLIGKICTERTIRRNIIAATMAK 61

Query: 65  AWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP 101
            W+ +     + +G NLF++ F+T++DK+ + +  P
Sbjct: 62  IWKLSRPAVFQEVGANLFVIIFNTQEDKQKIEKGKP 96

The following BLAST results are available for this feature:

BLAST of Clc09G04845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132681.1	1.6e-08	36.46	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	3.6e-08	36.46	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022156185.1	8.0e-08	33.33	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_042941294.1	2.0e-06	38.04	uncharacterized protein LOC122275977 [Carya illinoinensis]	[more]
XP_018821301.1	3.4e-06	30.21	uncharacterized protein LOC108991470 isoform X1 [Juglans regia] >KAF5476534.1 hy...	[more]

BLAST of Clc09G04845 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G04845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSZ1	7.8e-09	36.46	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	1.7e-08	36.46	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DU55	3.9e-08	33.33	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2I4EPP4	1.6e-06	30.21	uncharacterized protein LOC108991470 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
A0A2I4EPI2	1.6e-06	30.21	uncharacterized protein LOC108991470 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Clc09G04845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 37..99 e-value: 5.9E-7 score: 29.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G04845.1	Clc09G04845.1	mRNA