Clc09G04690 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G04690
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal protein
Location	ClcChr09: 3716127 .. 3720526 (-)
RNA-Seq Expression	Clc09G04690
Synteny	Clc09G04690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACCATTGGGGCATTGCCAGAACCTGTCTTATCTCTTCCACTTTTATGTTGATAGACTGCCAGAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCGATTGACAGACTGAGCTCTTTCTTCCTCCATGGCAATGACCACTTGTCATCCCACTGTGCACTCCTCCCTTACCATGGCCCACACTTCTTCAGTGCACCCTCAAGACCTTTCTTCCCATCTCTCCTTCAGACCCACTGCTGCCTCTTCCACCGCCAATATTTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGTGGAAGGCCAATCAATTGGGTCGACCTTAATTTTAGGAGAGAATCTAGGGATCATCTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAGGTGGCTGAGGTTGTGGAAGAGAATGGAGAAGAGGGGAATGGTGGATCAGCTACTTCAATTGTGCCCAAGATTAAGAGGGGGAAGGCTGCATTGCCTCTCAAAAGGGACAGGGTAAGCTTGAGCTTAAGTTCTTGTATTGGCTGTTTTAAATCTATTTGACTGGCTTTTTGGATATGGTTTTTAGAGTTTGATTGGTAGGTTTTACTTCATTTTAGGTTTTGCTTTAGCTCGAGGGTTTTAATTTTAGAAACTGTTGCCTGTTTATGGAGATGAAATATGTCTTAGGATTTTTCCTTTCGTTTTCCTGTCTACTTTTTGTTTGTCTTCCACAAAGTAGACTGGTTTTTTGGAGTTCTTCGCCCCTCCCCTCGGTTTTTTTTTTTTTTTTAATGTTGGTTGAGCTAATCATTTTTGAGTGAGGCCCAGAAGTATGCCTCCTGAAGGGCCAGGTATGATGTCCCAAGAGATCAACTGTTTCAAAATGAAATAATTCCTGTAAATGGAAGGGTACTTCTTGTTGGGGAAATCTAGACTCCATTAGTGGACTGTTCGGCTTGTTAGCCCTGCCTTCCCAGTAAAAAAATTTTGTACATTCGTCCCTAGTTTGTTATTCTGGTGTTCATTGGTTCTTTCCCTTCTACTGTTACCAACTTACCATATGGCTTATGTATATGTTTGTTTAGTGCTGGACTTCACTTAAGTTTTATTCAACCTCTACTCAAAAGTTTTCGTGGATCATTTGTTCTCTTTCAAGTTTCATTATCTTCCAGGATTAATAGTTCCTATTATGTCCATTTTCGATCAATGGCTTCATTAGTTGACTAGGAAAACTCTCGAAATTGGGCGGTCAAGTTCTGTTTTTTTGCTTTCTACCTTCCTTTGTAGCATCAGGCCCTTGCAGTTAGTTGTTATCATATTTTCTTCCAAGTTCTACTCTGAACCAGACCGTAGATTAAGAGAGGTCCATAAACGATATGTGCATTACTTTTGGTTCATATTATAAGCTGTGTTCTCTTAAAATATATGTCTTCCCCCTTCTCTTATTACTATTGGATCAGCTTTGACATGAAACTGTGTTCTGAAAATGTGCAGACCCGGTCAAAGAGGTTCCTGGAAATTCAAAAACTGAGGGAAACCAAAATGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAACGTCGAGCACAAAATTCGTGGAAACCGCTGAAGCCCACTTTCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAGTTTTCTTGGTAATTGCATGATAATTGATAAATAAAGTTAAATTATTAGAATACATGGGATTCCATATCAAAACCAATTGGCTATGAGAGGAGTAGCCCTTATATATTATAAAGATTGTGAGGTCGCTTAATTTTTCCAATGTGGGATTCTCAACAAAAGTCCAATCTACTACTTGATTCTACTATATCTATGTCCTAAATCACCAATACTCACTTTTTTCATAGGTAAATCTGCCCAAGGGAACTGGACAGACAGTTAAGGTAGCTGTTCTTACTCAAGGTAATCACTAAATTTGACTTAAATGATATTTTTATTGGTTAGGATTCAACGGTGGAATTAACTAGTTTTCAATGAGTTCTGGTTCCATTTCTTTCAATGAGAGAGCATTGTGGAATGGATATTAACACTTGATGCAACTAGTTATATGAACTTTAACAAGTCTGAATGGAAGCTCGGTTTCTACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGAGCAGGTATTATTGTCTTCGAAGTGCTTGTGAATTAGATAGTATGTGGTGGAGAATCCTCTATTTGAAAGGGAGTTCTGCTTGCTTGATTGAAAACGGCTCTGTTAGTGAGATTGCTTAAACTATCATGGAAATATTTCCCTTTATTATTTATGAGAAAATGTCCTTCTTGTAACCAGTGCGACGTGTGTGATACATGGTATTTGGAAAATGAAAATATTTATTTGTTCTTTATTAAATCTTCATACAGCTTTGCTAGTCATTGGTTAATACCGAATAAGTTGGTTTTCCCCCTTATAATCAGTTTCGCAATAATTTGAGTGAAGAGAACGAGATGAACGCTAGGATATGGCTTTTTAATTAACTATCTTATATATATATATATATATATGTAAATTTTTGTTATTTATTTCTCTTTTAGATGTGGTCATGTGGATTCTCTCATCTGTTCCCATCTCTCTAGTCAACTATAAATTTTGAGATTCATCTTATATTGGCAATATTTCCGTGCTGCTTTTTAAACTACGCTGTTTGTATTTGCATTATATCTCTTCACATGGCACTTTTTGTCGTTTTCAGTTTTCATTTTCTTTCACTCATTTCATATAATCTCATTGCTTTCTGAATCATGCAGGTGAAAAATTTGACGAAGCAAAGAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTGATTGCTTCACCAGATATGATGCCCAAGGTATGGTTCTTACATATTTTTCCTGCTATACATTGTGGTGGCTTTTCAAAAATATAAGTATTTCTAACAAAATTGTCCATAGCAATGAAGTAGTCTTCACATGTACTTAGAAATTGATTACCAAACACGATTCCAATTTTCTTGTATCCAATACTACTGATAATTTTTCCTTCCATGCTTGTACGGAAGTATTTTTGGCTACCTCTCGCATTATCTATGACCGAAATTAAGAAGATATGGTATTGTGTTCGTGTCATAGATTAAAAGAGTCCGAGTAGATTAAAGCCTATAGATATTTAACTGATATGCGTGTGAATGGTTTCGGTGTTCACTTTTGAAGTTGGTTCTTATTTTGAGATATTTTAGTTAGTTGTGGCAACTATAAACAAACTATTAATCTGTTAACCCCCTCCTCTCTGTTTGTACCAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGTATAGATAAGAACCATCCACATTTGTATGCATCACAATTTGACAATAAAATTGTACATAATTACTTACATTTGACAATAAAATTGTACATAATTACATACATATTTTGGCTAAGAGGAAGGTTTTACTTAAGATAACAGACTGATAATAGCTTTGTCCTGTTTAGGCTATAGCTGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATCGTTCACTTACCTTTTGGAAAGGCAGACTTTTCTGAAGATGACCTCCTTGTTAACTTGCTTGCTGCAATAGTATGTTCTTTACTAATCTCAAGTTCTCATAAACTCCATTGGTTTCTAAAAATTGTTGAGTCTTCCACCGTATTGATTTGTTCACATTAATCTAACAGAAATCGGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACATATATGCTCGTCGATGGGGCCTTCAATTCGATTAAACATAAGGGACATGCTTGACTACAAGATCCCATCATCAAATGCTTGAAGAATTTTACTCTGCACCTGTAAATGTGTTCTTCAATTTGTTTGATCTCAGCCCTCTTGGATGCGCCTTTTCGAGTCGTCTTCAGCAGCCAAAGATTTGGTTAAGATAGTATCAAAGTTGCTATGTGTCTAAAGAAAGAAAAGAGCTTGATGATTATCTTGGATTGAAGAGTAGTTGAAACTTGGAAACCGCATATTCATTTGTTATTGAAACTTATTTAAAGTAGCTCAGTTTTGTTGTGGTTATCAGTATCAATCATTTTCACCTCATCTGATTATTGTTTTTCTCAAATTTTTAGTTTCTTTTAACTTTTTTGTTGAAGATGGTGAATGATTGTTCTTGGACAATTTGTAATGAAATATAAAGAGTTGACACAGTTAAATTACAAATTTAGTTCGATGATAATAAAATATTAATTTATATT

mRNA sequence

CTACCATTGGGGCATTGCCAGAACCTGTCTTATCTCTTCCACTTTTATGTTGATAGACTGCCAGAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCGATTGACAGACTGAGCTCTTTCTTCCTCCATGGCAATGACCACTTGTCATCCCACTGTGCACTCCTCCCTTACCATGGCCCACACTTCTTCAGTGCACCCTCAAGACCTTTCTTCCCATCTCTCCTTCAGACCCACTGCTGCCTCTTCCACCGCCAATATTTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGTGGAAGGCCAATCAATTGGGTCGACCTTAATTTTAGGAGAGAATCTAGGGATCATCTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAGGTGGCTGAGGTTGTGGAAGAGAATGGAGAAGAGGGGAATGGTGGATCAGCTACTTCAATTGTGCCCAAGATTAAGAGGGGGAAGGCTGCATTGCCTCTCAAAAGGGACAGGACCCGGTCAAAGAGGTTCCTGGAAATTCAAAAACTGAGGGAAACCAAAATGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAACGTCGAGCACAAAATTCGTGGAAACCGCTGAAGCCCACTTTCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGACAGACAGTTAAGGTAGCTGTTCTTACTCAAGGTGAAAAATTTGACGAAGCAAAGAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTGATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCTGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATCGTTCACTTACCTTTTGGAAAGGCAGACTTTTCTGAAGATGACCTCCTTGTTAACTTGCTTGCTGCAATAAAATCGGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACATATATGCTCGTCGATGGGGCCTTCAATTCGATTAAACATAAGGGACATGCTTGACTACAAGATCCCATCATCAAATGCTTGAAGAATTTTACTCTGCACCTGTAAATGTGTTCTTCAATTTGTTTGATCTCAGCCCTCTTGGATGCGCCTTTTCGAGTCGTCTTCAGCAGCCAAAGATTTGGTTAAGATAGTATCAAAGTTGCTATGTGTCTAAAGAAAGAAAAGAGCTTGATGATTATCTTGGATTGAAGAGTAGTTGAAACTTGGAAACCGCATATTCATTTGTTATTGAAACTTATTTAAAGTAGCTCAGTTTTGTTGTGGTTATCAGTATCAATCATTTTCACCTCATCTGATTATTGTTTTTCTCAAATTTTTAGTTTCTTTTAACTTTTTTGTTGAAGATGGTGAATGATTGTTCTTGGACAATTTGTAATGAAATATAAAGAGTTGACACAGTTAAATTACAAATTTAGTTCGATGATAATAAAATATTAATTTATATT

Coding sequence (CDS)

ATGGCAATGACCACTTGTCATCCCACTGTGCACTCCTCCCTTACCATGGCCCACACTTCTTCAGTGCACCCTCAAGACCTTTCTTCCCATCTCTCCTTCAGACCCACTGCTGCCTCTTCCACCGCCAATATTTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGTGGAAGGCCAATCAATTGGGTCGACCTTAATTTTAGGAGAGAATCTAGGGATCATCTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAGGTGGCTGAGGTTGTGGAAGAGAATGGAGAAGAGGGGAATGGTGGATCAGCTACTTCAATTGTGCCCAAGATTAAGAGGGGGAAGGCTGCATTGCCTCTCAAAAGGGACAGGACCCGGTCAAAGAGGTTCCTGGAAATTCAAAAACTGAGGGAAACCAAAATGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAACGTCGAGCACAAAATTCGTGGAAACCGCTGAAGCCCACTTTCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGACAGACAGTTAAGGTAGCTGTTCTTACTCAAGGTGAAAAATTTGACGAAGCAAAGAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTGATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCTGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATCGTTCACTTACCTTTTGGAAAGGCAGACTTTTCTGAAGATGACCTCCTTGTTAACTTGCTTGCTGCAATAAAATCGGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACATATATGCTCGTCGATGGGGCCTTCAATTCGATTAAACATAAGGGACATGCTTGACTACAAGATCCCATCATCAAATGCTTGA

Protein sequence

MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRPINWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA

Homology

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BLAST of Clc09G04690 vs. NCBI nr
Match: XP_038897614.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 675.6 bits (1742), Expect = 2.3e-190
Identity = 349/360 (96.94%), Postives = 351/360 (97.50%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC+PTVHSSLTMAHTSSVHPQDLS   S RP A SSTANIFSLCHPLILQRRGGR 
Sbjct: 1   MAMATCNPTVHSSLTMAHTSSVHPQDLS---SLRPIAVSSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSI+PKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSILPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSITKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 357

[Close]

BLAST of Clc09G04690 vs. NCBI nr
Match: KAA0058588.1 (50S ribosomal protein L1 [Cucumis melo var. makuwa] >TYK10388.1 50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 665.6 bits (1716), Expect = 2.4e-187
Identity = 341/360 (94.72%), Postives = 347/360 (96.39%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC+PTVHSS TMAHTSSVHPQD SS LSFRP AASSTANIFSLCHPLILQRRGGR 
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
            NWVDL F RE RDHLVVAALAAEIEVAEVVEENGEEGNGG+ATS +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIR+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Clc09G04690 vs. NCBI nr
Match: XP_004135947.2 (50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KAE8646386.1 hypothetical protein Csa_016834 [Cucumis sativus])

HSP 1 Score: 665.6 bits (1716), Expect = 2.4e-187
Identity = 341/360 (94.72%), Postives = 349/360 (96.94%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC+PT+HSSLTMAHTSSVHPQD SS LSFRP AASSTANIFSLCHPLILQRRGGR 
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDL F RE RDHLVVAALAAEIEV E VEENGEEGNGG+ATS++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN R+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]

BLAST of Clc09G04690 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 659.1 bits (1699), Expect = 2.2e-185
Identity = 338/360 (93.89%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC PT  SSLTMAHTSSVHPQD+ S LSFRP AASSTA IFSLCHPL +QRRGGR 
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEG  G ATS+VPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIR+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Clc09G04690 vs. NCBI nr
Match: XP_023004585.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 635.2 bits (1637), Expect = 3.5e-178
Identity = 330/360 (91.67%), Postives = 337/360 (93.61%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC P VHSSLTMAHTSSVHP DL S LSFRP AASSTA I SL HP IL+ RGG+P
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVD NFRRESRDHLVVAALAAEIEV E VEENGEE +  +AT IVPKIK+GKAALPLK
Sbjct: 61  INWVDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEAS--TATLIVPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ  STKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN R+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]

BLAST of Clc09G04690 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.5e-125
Identity = 243/350 (69.43%), Postives = 281/350 (80.29%), Query Frame = 0


Query: 13  SLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRPINWVDLNFRRES 72
           SL  A +S  + QD S    F+P   +S     SLC  L L +R    + WVD   +++S
Sbjct: 10  SLCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCR-LTLNQRERSCLKWVDFTSQKQS 69

Query: 73  RDHL---VVAALAAEIEVAEVVEENGEEGNGGSATSIVP-KIKRGKAALPLKRDRTRSKR 132
              +   V+AA+AAE EVA++ EE GE  +GG AT   P K K+GKAALPLK DRTRSKR
Sbjct: 70  PKSVSFRVLAAVAAEAEVADMEEEEGE--SGGVATLPSPTKPKKGKAALPLKSDRTRSKR 129

Query: 133 FLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPK 192
           FLEIQKLRE K EYDLKTA+SL+KQ SSTKFVETAEAHFRLNIDPKYNDQQLRATV+LPK
Sbjct: 130 FLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPK 189

Query: 193 GTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASL 252
           GTG+TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM KVASL
Sbjct: 190 GTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASL 249

Query: 253 GKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLV 312
           G++LGPRGLMP PKAGTVT N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F E+DLL+
Sbjct: 250 GRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLI 309

Query: 313 NLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSS 359
           NL A IKSVE NKPTGAKGVYWKSAHI SSMGPSIRLNIR+MLDYK PS+
Sbjct: 310 NLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351

[Close]

BLAST of Clc09G04690 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 9.0e-121
Identity = 242/360 (67.22%), Postives = 285/360 (79.17%), Query Frame = 0


Query: 3   MTTCHPTVHSSLTMAH-TSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRPI 62
           M  C    HSSL +A+  +S   QDL+   S   + ASS  N   L  PL+L   G R  
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF-SFASSRPN--HLSFPLLL-LGGSRDR 60

Query: 63  NWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIV--PKIKRGKAALPL 122
               ++  R S    +V+A+AAE ++      + EE    +AT+++  PK K+GKAAL L
Sbjct: 61  RCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAALVL 120

Query: 123 KRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQ 182
           KRDRTRSKRFLEIQKLRETK EYD+ TAISLLKQT++T+FVE+ EAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQ 180

Query: 183 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 242
           LRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASP 240

Query: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 302
           DMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PFGK 
Sbjct: 241 DMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKV 300

Query: 303 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSN 360
           +F+E+DLL+N LAA+KSVE NKP GAKGVYWKSAHICSSMGPSI+LNIR+M+D+K P++N
Sbjct: 301 NFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTAN 346

[Close]

BLAST of Clc09G04690 vs. ExPASy Swiss-Prot
Match: P49208 (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 5.2e-76
Identity = 145/168 (86.31%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 110 IKRGKAALPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRL 169
           +++GK    LK DR RSKRFLEIQKLRE K EYDLKTAISL+K+T+ TKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 170 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 229
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 230 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 278
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]

BLAST of Clc09G04690 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.4e-75
Identity = 140/230 (60.87%), Postives = 183/230 (79.57%), Query Frame = 0


Query: 126 SKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 185
           S+R  E+Q   E + EY    A+SLLK+T++ KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 186 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 245
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 246 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 305
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 306 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKI 356
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + DYK+
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234

[Close]

BLAST of Clc09G04690 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 4.4e-75
Identity = 141/230 (61.30%), Postives = 183/230 (79.57%), Query Frame = 0


Query: 126 SKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 185
           S+R  + Q   E K  Y+   A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVENK-AYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 186 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 245
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 246 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 305
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 306 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKI 356
           LLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D K+
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of Clc09G04690 vs. ExPASy TrEMBL
Match: A0A5D3CGN7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00300 PE=3 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.2e-187
Identity = 341/360 (94.72%), Postives = 347/360 (96.39%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC+PTVHSS TMAHTSSVHPQD SS LSFRP AASSTANIFSLCHPLILQRRGGR 
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
            NWVDL F RE RDHLVVAALAAEIEVAEVVEENGEEGNGG+ATS +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIR+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Clc09G04690 vs. ExPASy TrEMBL
Match: A0A0A0K886 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 661.8 bits (1706), Expect = 1.7e-186
Identity = 339/360 (94.17%), Postives = 348/360 (96.67%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC+PT+HSSLTMAHTSSVHPQD SS LSFRP AASSTANIFSLCHPLILQRRGGR 
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDL F RE RDHLVVAALAAEIEV E VEENGEEGNGG+ATS++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN R+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]

BLAST of Clc09G04690 vs. ExPASy TrEMBL
Match: A0A6J1DG73 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185
Identity = 338/360 (93.89%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC PT  SSLTMAHTSSVHPQD+ S LSFRP AASSTA IFSLCHPL +QRRGGR 
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEG  G ATS+VPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIR+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Clc09G04690 vs. ExPASy TrEMBL
Match: A0A6J1KV03 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1)

HSP 1 Score: 635.2 bits (1637), Expect = 1.7e-178
Identity = 330/360 (91.67%), Postives = 337/360 (93.61%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC P VHSSLTMAHTSSVHP DL S LSFRP AASSTA I SL HP IL+ RGG+P
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVD NFRRESRDHLVVAALAAEIEV E VEENGEE +  +AT IVPKIK+GKAALPLK
Sbjct: 61  INWVDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEAS--TATLIVPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ  STKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN R+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]

BLAST of Clc09G04690 vs. ExPASy TrEMBL
Match: A0A6J1H7Q8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461210 PE=3 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.9e-177
Identity = 330/360 (91.67%), Postives = 337/360 (93.61%), Query Frame = 0


Query: 1   MAMTTCHPTVHSSLTMAHTSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRP 60
           MAM TC PTVHSSLTMAHT SVHPQDL S LSFRP AA STA IF   HPLI++ RG +P
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVHPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVD NFRRESRDHLVVAALAAEIEV E VEENGEEGN  +AT IVPKIK+GKAALPLK
Sbjct: 61  INWVDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEGN--TATLIVPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ  STKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN R+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Clc09G04690 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 434.9 bits (1117), Expect = 6.4e-122
Identity = 242/360 (67.22%), Postives = 285/360 (79.17%), Query Frame = 0


Query: 3   MTTCHPTVHSSLTMAH-TSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRPI 62
           M  C    HSSL +A+  +S   QDL+   S   + ASS  N   L  PL+L   G R  
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF-SFASSRPN--HLSFPLLL-LGGSRDR 60

Query: 63  NWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIV--PKIKRGKAALPL 122
               ++  R S    +V+A+AAE ++      + EE    +AT+++  PK K+GKAAL L
Sbjct: 61  RCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAALVL 120

Query: 123 KRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQ 182
           KRDRTRSKRFLEIQKLRETK EYD+ TAISLLKQT++T+FVE+ EAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQ 180

Query: 183 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 242
           LRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASP 240

Query: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 302
           DMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PFGK 
Sbjct: 241 DMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKV 300

Query: 303 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSN 360
           +F+E+DLL+N LAA+KSVE NKP GAKGVYWKSAHICSSMGPSI+LNIR+M+D+K P++N
Sbjct: 301 NFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTAN 346

[Close]

BLAST of Clc09G04690 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-79
Identity = 181/299 (60.54%), Postives = 215/299 (71.91%), Query Frame = 0


Query: 3   MTTCHPTVHSSLTMAH-TSSVHPQDLSSHLSFRPTAASSTANIFSLCHPLILQRRGGRPI 62
           M  C    HSSL +A+  +S   QDL+   S   + ASS  N   L  PL+L   G R  
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF-SFASSRPN--HLSFPLLL-LGGSRDR 60

Query: 63  NWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIV--PKIKRGKAALPL 122
               ++  R S    +V+A+AAE ++      + EE    +AT+++  PK K+GKAAL L
Sbjct: 61  RCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAALVL 120

Query: 123 KRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQ 182
           KRDRTRSKRFLEIQKLRETK EYD+ TAISLLKQT++T+FVE+ EAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQ 180

Query: 183 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 242
           LRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASP 240

Query: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGK 299
           DMM KVA LGK+LGPRGLMPNPKAGTVT NIPQ+    ++GK+     K G+     GK
Sbjct: 241 DMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of Clc09G04690 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 165.2 bits (417), Expect = 9.5e-41
Identity = 87/215 (40.47%), Postives = 134/215 (62.33%), Query Frame = 0


Query: 142 YDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQ 201
           +DL  AI  +K  +  KF ET EAH RL I+   ++  +R T+ LP    + VKVA   +
Sbjct: 188 FDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAE 247

Query: 202 GEKFDEAKNAGADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPN 261
           G   ++AK AGAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++L   GLMPN
Sbjct: 248 GADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRILNNHGLMPN 307

Query: 262 PKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVN 321
           PK G+VT ++ +A+ + K G  ++R DKT I+H+P GK  FSE+ L  N+ A + ++ + 
Sbjct: 308 PKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLA 367

Query: 322 KPTGAKGV-----YWKSAHICSSMGPSIRLNIRDM 351
           KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 368 KPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of Clc09G04690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897614.1	2.3e-190	96.94	50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]	[more]
KAA0058588.1	2.4e-187	94.72	50S ribosomal protein L1 [Cucumis melo var. makuwa] >TYK10388.1 50S ribosomal pr...	[more]
XP_004135947.2	2.4e-187	94.72	50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KAE8646386.1 hypothet...	[more]
XP_022152504.1	2.2e-185	93.89	50S ribosomal protein L1, chloroplastic-like [Momordica charantia]	[more]
XP_023004585.1	3.5e-178	91.67	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Clc09G04690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE95	3.5e-125	69.43	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
Q9LY66	9.0e-121	67.22	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
P49208	5.2e-76	86.31	50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R...	[more]
Q3MA18	3.4e-75	60.87	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
B0JNQ5	4.4e-75	61.30	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]

BLAST of Clc09G04690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGN7	1.2e-187	94.72	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00...	[more]
A0A0A0K886	1.7e-186	94.17	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]
A0A6J1DG73	1.1e-185	93.89	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1	[more]
A0A6J1KV03	1.7e-178	91.67	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1	[more]
A0A6J1H7Q8	1.9e-177	91.67	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461210 PE=3 SV=1	[more]

BLAST of Clc09G04690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	6.4e-122	67.22	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	1.8e-79	60.54	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	9.5e-41	40.47	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 151..341 e-value: 1.4E-47 score: 162.1
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 144..345 e-value: 9.84877E-74 score: 225.526
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 189..280 e-value: 6.0E-83 score: 279.4
None	No IPR available	GENE3D	3.30.190.20		coord: 142..345 e-value: 6.0E-83 score: 279.4
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 139..350
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 139..350
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 125..348 e-value: 4.0E-93 score: 308.9
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 120..350 score: 39.384766
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 242..260
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 128..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G04690.1	Clc09G04690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding