Clc09G04625 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G04625
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionAAI domain-containing protein
LocationClcChr09: 3678161 .. 3679933 (-)
RNA-Seq ExpressionClc09G04625
SyntenyClc09G04625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTAAATCTGCTGTGTTTTGATATGCTATCCCATGAGTATATTGTAGGTCACATGTATATGGGACTCGACAATCTATTTGCTAAATGAATTATCTCTTTCATTTTAAAATCTATAGTTCTTATTGTGTGTGTACATCAAACATTAGAGCTCATGGTGGTCGATTGTCTCAATTTATTTCGGTTGCATTTAAAATGGTCTGAACGATTATTTGTCTAGGGAACTCACAAGTTTGATTCGCTGCTACTTTTCCTTGGTTACCATCTCCGATATTTTACTAGATTGTCTGTTGGTGGATGAAGGTTTGGATTGATATTGATTGAAGTTGTGACAGTGAATTTACTGGCATTAGATTCAGTGGTCTGGTAATCTGTTATTCGAATTCTATGTCATTGTGAATCTCCTGTTTTGTTTGGGTCTTAGGCTGAACAGTCACAGGTTAGAAGCCTTCGTTGATATTTCAAATGAAATATTTGAGTTAAGAATGTAAAATTTTGGGATGCATTATGTGTATTTCTATTGATTTTTTGATTTCCACAAAAACCTGAGGTTGCATTGGCATTTTCACCAACCAGGTGCTTTCTATCTGTTTCACCTGCACATAAAAGCACAAATTTTGCCAGATACCCATAAAAAAATACAGATAAAACCCAGAATATATAGATAGAAAGAGAAACGAAAAATTGCACATTGCATTGCAAGTGGGTATTGGGTTAGGAAGATAGTGTAAGAAAGCATGAGTTACTCTCAATATAAGCAACACTAGAGTATACGTTCTTCATCTCAACTTAACTTGAGAATTTATCTGTAGTCAAAGATGAAACAGGCAAAGTTTAAGACCCTGCAATTTCTAGTGTTCATGATGGCCATTGCATGCTTTCTGGGGCAAGGTAAAGCCAAGTTCTGTTCTAACAGTCTGATTTCCTCTCTTGTTCAACTAATTCCTTGCAGGCCTGCACTGTCTCCATTCCACCCCATCCCACCAAGTCTTCTCTGCTGCAATGCCATCAAAACTCTGGGCCAGTCCTGTCTTTGTGCACTGTTGGATGCCCCCCCGGTTTCTGGTGTTGATTACAACTTGGCCATGTCTCTGCCTCAGAAGTGCGCTACAAATTTCGACCCATGTAAATTTTTTTCTTGCATCCTGATCTCTACATCTTTCAAGTTGTTTTTGTGTTGAAGACGGTTGGAATGTCTTGAATCTGATATTGCTTTATGTTTTCTGTTCATCTTTGATTGTTGATTTCTTAACAAAGATTCATGAGAAACTTGGTTTTGTTTTTGGGTTTCTATTGCAGGTTTCTAGTAGTTGGAAGATGGTGGGACTGTGCGAAAATGATGAATAAAAATGTTATAGCTGGATATATGTTTAAGTAAGAATAAATGTTTGTTTCAACTTTGGGATGAGAATAACTTTGGTTGTTTTCTAACTGAGATTCTTAGAGGTGCTTCATTTGGACTCTTTGGTTGCAGGATGAGTTTGATGAGTCATGTGATATATAGATGTGGAGTTGAGATTTCTATTCATAATTTGACATGTTATTAGATAATATATAATTTCTTATCTTTATTACACCTTGCATTGATCTTAGATGTTATGACGAGCAATGAAGGTACGTCAGTACTAGAAGTTTTTTCCTCATTAACGTGATTGAATTGTGATTAGACGAATTATGAATCATTTCATTGAAATTGATTTATACAATCTTGATATGTGGAGGTGAGGATGATTGCCAAATACTATGTATATACTCTTAAAACAGTATCTTGA

mRNA sequence

ATGGTTTGTGACAGTGAATTTACTGGCATTAGATTCAGTGGTCTGTCAAAGATGAAACAGGCAAAGTTTAAGACCCTGCAATTTCTAGTGTTCATGATGGCCATTGCATGCTTTCTGGGGCAAGGTAAAGCCAAGTTCTGTTCTAACAGTCTGATTTCCTCTCTTGTTCAACTAATTCCTTGCAGGCCTGCACTGTCTCCATTCCACCCCATCCCACCAAGTCTTCTCTGCTGCAATGCCATCAAAACTCTGGGCCAGTCCTGTCTTTGTGCACTGTTGGATGCCCCCCCGGTTTCTGGTGTTGATTACAACTTGGCCATGTCTCTGCCTCAGAAGTGCGCTACAAATTTCGACCCATTATCTTGA

Coding sequence (CDS)

ATGGTTTGTGACAGTGAATTTACTGGCATTAGATTCAGTGGTCTGTCAAAGATGAAACAGGCAAAGTTTAAGACCCTGCAATTTCTAGTGTTCATGATGGCCATTGCATGCTTTCTGGGGCAAGGTAAAGCCAAGTTCTGTTCTAACAGTCTGATTTCCTCTCTTGTTCAACTAATTCCTTGCAGGCCTGCACTGTCTCCATTCCACCCCATCCCACCAAGTCTTCTCTGCTGCAATGCCATCAAAACTCTGGGCCAGTCCTGTCTTTGTGCACTGTTGGATGCCCCCCCGGTTTCTGGTGTTGATTACAACTTGGCCATGTCTCTGCCTCAGAAGTGCGCTACAAATTTCGACCCATTATCTTGA

Protein sequence

MVCDSEFTGIRFSGLSKMKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLCCNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDPLS
Homology
BLAST of Clc09G04625 vs. NCBI nr
Match: XP_038900004.1 (non-specific lipid-transfer protein P5-like [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MKQA FK LQFLVFMMAIACFL QGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPS+LC
Sbjct: 1   MKQANFKPLQFLVFMMAIACFLEQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSILC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP
Sbjct: 61  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 102

BLAST of Clc09G04625 vs. NCBI nr
Match: XP_008461263.1 (PREDICTED: protein LIM1-like [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MKQA FK L+FLVF++AIA FLGQGKAKFCSNSLI SLVQL+PCRP+LSPFHPIPPS LC
Sbjct: 1   MKQAIFKPLEFLVFILAIASFLGQGKAKFCSNSLIYSLVQLLPCRPSLSPFHPIPPSPLC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           CNAI+TLGQSC+CALLDAPPVSGVDYNLAMSLPQKCA+NF+P
Sbjct: 61  CNAIETLGQSCICALLDAPPVSGVDYNLAMSLPQKCASNFEP 102

BLAST of Clc09G04625 vs. NCBI nr
Match: KGN45155.1 (hypothetical protein Csa_016316 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-43
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MKQA FK L+FLVFM+AI  FLGQ KAKFCSNSLI SLVQLIPCRP+LSPFHPIPPSL+C
Sbjct: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           C+AIKTLGQSC+CALLDAPPVSGVDYNLAMSLPQKCA NF+P
Sbjct: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEP 102

BLAST of Clc09G04625 vs. NCBI nr
Match: XP_023514059.1 (putative lipid-transfer protein DIR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MK   FK LQFLVFM+A+ CF+ Q KAKFCSNSLIS+LVQLIPC+P+LSPF P+PPSLLC
Sbjct: 1   MKPGSFKPLQFLVFMIAMTCFVEQSKAKFCSNSLISTLVQLIPCKPSLSPFSPMPPSLLC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           C+A+KTLGQ CLCA+LDAPPVSG+DYN+AM LPQKCA NF P
Sbjct: 61  CHALKTLGQPCLCAVLDAPPVSGIDYNVAMLLPQKCALNFHP 102

BLAST of Clc09G04625 vs. NCBI nr
Match: KAG7025667.1 (hypothetical protein SDJN02_12165, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.5 bits (423), Expect = 6.9e-38
Identity = 77/102 (75.49%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MK   FK LQFLVFM+A+ CF+   KAKFCSNSLIS+LVQLIPC+P+LSPF P+PPSLLC
Sbjct: 1   MKPGSFKPLQFLVFMIAMTCFVEPSKAKFCSNSLISTLVQLIPCKPSLSPFSPMPPSLLC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           C+A+KTLGQ CLCA+LDAPPVSG+DYN+AM LPQKCA NF P
Sbjct: 61  CHALKTLGQPCLCAVLDAPPVSGIDYNVAMLLPQKCALNFHP 102

BLAST of Clc09G04625 vs. ExPASy TrEMBL
Match: A0A1S3CEQ8 (protein LIM1-like OS=Cucumis melo OX=3656 GN=LOC103499902 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.0e-44
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MKQA FK L+FLVF++AIA FLGQGKAKFCSNSLI SLVQL+PCRP+LSPFHPIPPS LC
Sbjct: 1   MKQAIFKPLEFLVFILAIASFLGQGKAKFCSNSLIYSLVQLLPCRPSLSPFHPIPPSPLC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           CNAI+TLGQSC+CALLDAPPVSGVDYNLAMSLPQKCA+NF+P
Sbjct: 61  CNAIETLGQSCICALLDAPPVSGVDYNLAMSLPQKCASNFEP 102

BLAST of Clc09G04625 vs. ExPASy TrEMBL
Match: A0A0A0K635 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428920 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MKQA FK L+FLVFM+AI  FLGQ KAKFCSNSLI SLVQLIPCRP+LSPFHPIPPSL+C
Sbjct: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           C+AIKTLGQSC+CALLDAPPVSGVDYNLAMSLPQKCA NF+P
Sbjct: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEP 102

BLAST of Clc09G04625 vs. ExPASy TrEMBL
Match: A0A6J1KX32 (putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111497920 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.3e-38
Identity = 77/102 (75.49%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MK   FK LQFLVFM+A+ CF+   KAKFCSNSLIS+LVQLIPC+P+LSPF P+PPSLLC
Sbjct: 1   MKPGSFKPLQFLVFMIAMTCFVEPSKAKFCSNSLISTLVQLIPCKPSLSPFSPMPPSLLC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           C+A+KTLGQ CLCA+LDAPPVSG+DYN+AM LPQKCA NF P
Sbjct: 61  CHALKTLGQPCLCAVLDAPPVSGIDYNVAMLLPQKCALNFHP 102

BLAST of Clc09G04625 vs. ExPASy TrEMBL
Match: A5AEY0 (AAI domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 0

Query: 12  FSGLSKMKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPI 71
           FS   K+  +KF ++  LVF++ IA   GQGK   C  S  S+L+Q+IPCR A++PF PI
Sbjct: 335 FSSNMKLSHSKF-SVPVLVFLLVIAGLAGQGKGTTCGTSFFSALIQMIPCRAAVAPFSPI 394

Query: 72  PPSLLCCNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           PPS  CCNA++TLGQ CLC L++ PP+SGVD N+AM LP+KC TNFDP
Sbjct: 395 PPSEACCNAVRTLGQPCLCVLVNGPPISGVDRNMAMLLPEKCTTNFDP 441

BLAST of Clc09G04625 vs. ExPASy TrEMBL
Match: A0A7J7CQM1 (Protein M7-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW14G00555 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MK    K L  LVF++ + C++ +G+   C+++  S+LVQLIPCR A++PF PIPPS  C
Sbjct: 1   MKLVHSKALPLLVFLLVMTCYVERGRGTACTSTFFSALVQLIPCRAAVAPFSPIPPSETC 60

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           CNA+KTLGQ CLC L++ PP++GVD N+A+ LP KC  NF+P
Sbjct: 61  CNAVKTLGQPCLCVLVNGPPITGVDRNMALQLPDKCTANFEP 102

BLAST of Clc09G04625 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-22
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 47  CSNSLISSLVQLIPCRPALSPFHPIPPSLLCCNAIKTLGQSCLCALLDAPPVSGVDYNLA 106
           CS +  S+LVQLIPCR A++PF PIPP+ +CC+A+ TLG+ CLC L + PP+SG+D ++A
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 107 MSLPQKCATNFDP 120
           + LPQ+C+ NF P
Sbjct: 108 LQLPQRCSANFPP 120

BLAST of Clc09G04625 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 6.2e-21
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 0

Query: 18  MKQAKFKTLQFLVFMMAIACFLGQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSLLC 77
           MK+++  T+  L+ M+  +  + +     C  + +S+L+QL+PCRP+++PF  +PP+ LC
Sbjct: 4   MKKSQVFTVMLLMVMVQ-SGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLC 63

Query: 78  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDP 120
           C AIKTLGQ CLC L   PP+ GVD  LA+ LP KC+ NF P
Sbjct: 64  CAAIKTLGQPCLCVLAKGPPIVGVDRTLALHLPGKCSANFLP 104

BLAST of Clc09G04625 vs. TAIR 10
Match: AT5G48490.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 57  QLIPCRPALSPFHPIPPSLLCCNAIKTLGQSCLCALLDAPPVS--GVDYNLAMSLPQKC 114
           +L  C PA+S  +P  PSLLCCNA+K    +CLC   ++P +   GVD  LA SLP++C
Sbjct: 35  ELNECLPAVSKNNPTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKEC 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038900004.11.1e-4896.08non-specific lipid-transfer protein P5-like [Benincasa hispida][more]
XP_008461263.11.9e-4386.27PREDICTED: protein LIM1-like [Cucumis melo][more]
KGN45155.13.2e-4386.27hypothetical protein Csa_016316 [Cucumis sativus][more]
XP_023514059.11.4e-3876.47putative lipid-transfer protein DIR1 [Cucurbita pepo subsp. pepo][more]
KAG7025667.16.9e-3875.49hypothetical protein SDJN02_12165, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CEQ89.0e-4486.27protein LIM1-like OS=Cucumis melo OX=3656 GN=LOC103499902 PE=4 SV=1[more]
A0A0A0K6351.5e-4386.27AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428920 PE=4 SV... [more]
A0A6J1KX323.3e-3875.49putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111497920... [more]
A5AEY05.3e-2856.48AAI domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 S... [more]
A0A7J7CQM12.9e-2652.94Protein M7-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW14G00555 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G52130.14.3e-2256.16Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G07450.16.2e-2145.10Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT5G48490.12.7e-0847.46Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilyGENE3D1.10.110.10coord: 45..119
e-value: 1.5E-11
score: 46.0
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 55..119
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 41..118
e-value: 7.6E-8
score: 32.4
NoneNo IPR availablePANTHERPTHR33122:SF33BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEINcoord: 18..120
IPR039265Putative lipid-transfer protein DIR1-likePANTHERPTHR33122LIPID BINDING PROTEIN-RELATEDcoord: 18..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G04625.1Clc09G04625.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009627 systemic acquired resistance
molecular_function GO:0005504 fatty acid binding