Clc09G04500 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G04500
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 3603082 .. 3603884 (-)
RNA-Seq ExpressionClc09G04500
SyntenyClc09G04500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGACTCACAATTTCCAGAATTCACACACATTCCTTTTCTTCTCTTAAGTAATTTCTTTCACTTTCAATGGCGATTTCCGGCACTTCCAAGATCTCCATCGTGCTCGTTCTCGCCGTCGTGGCTATCTTCTCAGCCGTCGCTTCCGCTCAGGAAGCTCCAGCCCCGGCGCCGGAGCTCGACCGAGGAGCAGCGTCGTCTCTGCCTGCTGCGGTGTTCATGCCTCTGCTCTTTGCTTCCTTCTTCCTCTCTCTTCCTGCACTTTTCAAGCCCTAAATTAAATCCATCGCGGATCGTTCATTTATATACGTTTATTAATTATTATCATTTTATATTTAGAGCTTTATTTGATCGGAAAATTATAATAATAATAATAATAATAAAATGAGATCTCTACAATCTCTTTAGGTTTATTTGTTCATTGTTAGCGATCTGTATTTGCTGTATAATTATTTTTAGTGTGATTTATTATTATTAATAACAATAGACTTTGGTTCTTTCTATTTCAATTTTGGACTTCACAGTCAGTGTTTGGACAAATTAAAATTATGATTATTAATAATTTAAAGTGAGAAAATGGGATTAACTTAGATTTCAGTTACGTGGGAATTTATATTTATTTAATTAAGGTTATAAATAGGTCAAATTATAAAAATATGAATGTGGATACCAGAGTTTATGGAATCAAATGGATTGGAACGTAAAGTTTGAATTATGAAGTGAATTATTAAATTAGAAATATTGGTAAAAAGGGGTATCTTTTGAAACAATTTATACCACAATTTTGTTTGAGATTGCGTCTCTT

mRNA sequence

CCGACTCACAATTTCCAGAATTCACACACATTCCTTTTCTTCTCTTAAGTAATTTCTTTCACTTTCAATGGCGATTTCCGGCACTTCCAAGATCTCCATCGTGCTCGTTCTCGCCGTCGTGGCTATCTTCTCAGCCGTCGCTTCCGCTCAGGAAGCTCCAGCCCCGGCGCCGGAGCTCGACCGAGGAGCAGCGTCGTCTCTGCCTGCTGCGGTGTTCATGCCTCTGCTCTTTGCTTCCTTCTTCCTCTCTCTTCCTGCACTTTTCAAGCCCTAAATTAAATCCATCGCGGATCGTTCATTTATATACGTTTATTAATTATTATCATTTTATATTTAGAGCTTTATTTGATCGGAAAATTATAATAATAATAATAATAATAAAATGAGATCTCTACAATCTCTTTAGGTTTATTTGTTCATTGTTAGCGATCTGTATTTGCTGTATAATTATTTTTAGTGTGATTTATTATTATTAATAACAATAGACTTTGGTTCTTTCTATTTCAATTTTGGACTTCACAGTCAGTGTTTGGACAAATTAAAATTATGATTATTAATAATTTAAAGTGAGAAAATGGGATTAACTTAGATTTCAGTTACGTGGGAATTTATATTTATTTAATTAAGGTTATAAATAGGTCAAATTATAAAAATATGAATGTGGATACCAGAGTTTATGGAATCAAATGGATTGGAACGTAAAGTTTGAATTATGAAGTGAATTATTAAATTAGAAATATTGGTAAAAAGGGGTATCTTTTGAAACAATTTATACCACAATTTTGTTTGAGATTGCGTCTCTT

Coding sequence (CDS)

ATGGCGATTTCCGGCACTTCCAAGATCTCCATCGTGCTCGTTCTCGCCGTCGTGGCTATCTTCTCAGCCGTCGCTTCCGCTCAGGAAGCTCCAGCCCCGGCGCCGGAGCTCGACCGAGGAGCAGCGTCGTCTCTGCCTGCTGCGGTGTTCATGCCTCTGCTCTTTGCTTCCTTCTTCCTCTCTCTTCCTGCACTTTTCAAGCCCTAA

Protein sequence

MAISGTSKISIVLVLAVVAIFSAVASAQEAPAPAPELDRGAASSLPAAVFMPLLFASFFLSLPALFKP
Homology
[Close]
BLAST of Clc09G04500 vs. NCBI nr
Match: KGN45142.1 (hypothetical protein Csa_015584 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 7  SKISIVLVLAVVAIFSAVASAQEAPAPAPELDRGAASSLPAAVFMPLLFASFFLSLPALF 66
          SKIS V+ LA+VA+FSA+ SAQEAPAPAP LDRGAASSLP A  M LLFASFF SLPAL 
Sbjct: 4  SKISPVVFLALVALFSALVSAQEAPAPAPGLDRGAASSLPVATSMALLFASFFFSLPALL 63

Query: 67 K 68
          K
Sbjct: 64 K 64

[Close]
BLAST of Clc09G04500 vs. NCBI nr
Match: KAG6595145.1 (hypothetical protein SDJN03_11698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 0 

Query: 1  MAISGTSKISIVLVLAVVAIFSAVASAQEA----PAPAPELDRGAASSLPAAVFMPLLFA 60
          MAISGTS +  V+V A+VA+FSAVASAQE+    PAPAP LDRGAA +LPAA  M LLFA
Sbjct: 1  MAISGTSTVFYVVVFAIVAVFSAVASAQESPVPTPAPAPVLDRGAA-ALPAAASMALLFA 60

Query: 61 SFFLSLPALFK 68
          SFFLSLPAL K
Sbjct: 61 SFFLSLPALLK 70

[Close]
BLAST of Clc09G04500 vs. ExPASy TrEMBL
Match: A0A0A0K9T6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428790 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 7  SKISIVLVLAVVAIFSAVASAQEAPAPAPELDRGAASSLPAAVFMPLLFASFFLSLPALF 66
          SKIS V+ LA+VA+FSA+ SAQEAPAPAP LDRGAASSLP A  M LLFASFF SLPAL 
Sbjct: 4  SKISPVVFLALVALFSALVSAQEAPAPAPGLDRGAASSLPVATSMALLFASFFFSLPALL 63

Query: 67 K 68
          K
Sbjct: 64 K 64

The following BLAST results are available for this feature:
BLAST of Clc09G04500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45142.14.0e-1177.05hypothetical protein Csa_015584 [Cucumis sativus][more]
KAG6595145.11.2e-1071.83hypothetical protein SDJN03_11698, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc09G04500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G04500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9T62.0e-1177.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428790 PE=4 SV=1[more]
BLAST of Clc09G04500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G04500.1Clc09G04500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane