Clc09G04480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G04480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	thylakoid lumenal 19 kDa protein, chloroplastic
Location	ClcChr09: 3592163 .. 3593698 (-)
RNA-Seq Expression	Clc09G04480
Synteny	Clc09G04480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAATTCGAATAACATATAAAGTATATGTCACCGACTAATAAATTAGAGGTTTTAATTATTATACCCATACCGATGTTGATATAACAAACAACTTCCTACTCTATAATTTTTAGTACAAATAAATGAGATGTAGATAAGTTATTATGAGGTAAATTGGGTTCTACAAAATTAGCAAAATATATGGATTCCACAAATTAAAAAACGATTTAGAAAAGATAAGAAAAAAAAAAAAGAAAAATAATGGATAAGGAGAAAATCCTCTTCGACAAGATAAACCAGAAGCTCAAATCCACGAAAATCCACCACCATGGCCACAGCAATCACACCATTGGCGTTCTTCTCCGCCGCCGCCACATCCACCGCGACAACCGCTCCTAAACCACCGCAAACTCCGCCGCTACCAAAGCCCCAAATTACCATCCTCCAATCTAAACCTCCACTTTCAACATCAACCGCCCCAATCTCCATCGCAGCCACCGCCATCGCCGTAGCCGCGATCCTAAGCACCACTCCATCGTCCCTCGCCGACAACGGCGCCGGTTTCAACGTCTACTACGGCACTGCCGCCAGCGCCGCCAACTACGGCGGTCTTGGCGGCAACGCCAGCAAGAAAGACACAGCGGAATACATCTACGACGTGCCGGAAGGCTGGAAAGAGCGATTAGTATCCAAGGTCGAGAAAGGTACTCCAAAATCGCAATCAAAAAGGTCTATTAGTTCTCAATTCGTTTCGAAAATCAATTTTACGTTCTTAATTCCCCAGGTACGAACGGAACCGACAGTGAATTTTACAATCCGAAGAAACGAACAGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGGGCCGAAGGATGTGATTCTGAATAACCTAGCTTTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTTGGCGGAGGAGAAAAAGGATGAGAATGGACAGATTTATTATGTGTATGAGATCGACGGCGCCGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAACTGTATGCGCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGATCGGATCGTATTAGCTAGCTTTTGTGGGCATCGTCGGAGATTTGATCGGAGAGTGTATGAATTGGTAATTATATGCTTATTCTTGAATGATGAAATCTGATGCTTTAACTTCGGCCTTCACCCTCATCTCTGTTTTCAGAATTTCGTCAAGAATTTCAAAAGTTTTGGGAGGATGATTTACTTGTGTAAATTGATCAAGATTAAACTATGTATATTGACATTTAGTATGAGTATATGCTAGTGTTAAATTGGTTAGTTGTCAAGTTTCAACATGACTCAATTTCCTTAAAACTTCGTAACATTACATTTTCAAGATATATGGTCTCAAATTCAATCAGTATGCTTAGATTAGCTATCTAATAACTTGTTCTACACTTTATTTTATTTGAAGACTTATATTGGCAAATA

mRNA sequence

CATAATTCGAATAACATATAAAGTATATGTCACCGACTAATAAATTAGAGGTTTTAATTATTATACCCATACCGATGTTGATATAACAAACAACTTCCTACTCTATAATTTTTAGTACAAATAAATGAGATGTAGATAAGTTATTATGAGGTAAATTGGGTTCTACAAAATTAGCAAAATATATGGATTCCACAAATTAAAAAACGATTTAGAAAAGATAAGAAAAAAAAAAAAGAAAAATAATGGATAAGGAGAAAATCCTCTTCGACAAGATAAACCAGAAGCTCAAATCCACGAAAATCCACCACCATGGCCACAGCAATCACACCATTGGCGTTCTTCTCCGCCGCCGCCACATCCACCGCGACAACCGCTCCTAAACCACCGCAAACTCCGCCGCTACCAAAGCCCCAAATTACCATCCTCCAATCTAAACCTCCACTTTCAACATCAACCGCCCCAATCTCCATCGCAGCCACCGCCATCGCCGTAGCCGCGATCCTAAGCACCACTCCATCGTCCCTCGCCGACAACGGCGCCGGTTTCAACGTCTACTACGGCACTGCCGCCAGCGCCGCCAACTACGGCGGTCTTGGCGGCAACGCCAGCAAGAAAGACACAGCGGAATACATCTACGACGTGCCGGAAGGCTGGAAAGAGCGATTAGTATCCAAGGTCGAGAAAGGTACGAACGGAACCGACAGTGAATTTTACAATCCGAAGAAACGAACAGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGGGCCGAAGGATGTGATTCTGAATAACCTAGCTTTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTTGGCGGAGGAGAAAAAGGATGAGAATGGACAGATTTATTATGTGTATGAGATCGACGGCGCCGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAACTGTATGCGCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGATCGGATCGTATTAGCTAGCTTTTGTGGGCATCGTCGGAGATTTGATCGGAGAGTGTATGAATTGGTAATTATATGCTTATTCTTGAATGATGAAATCTGATGCTTTAACTTCGGCCTTCACCCTCATCTCTGTTTTCAGAATTTCGTCAAGAATTTCAAAAGTTTTGGGAGGATGATTTACTTGTGTAAATTGATCAAGATTAAACTATGTATATTGACATTTAGTATGAGTATATGCTAGTGTTAAATTGGTTAGTTGTCAAGTTTCAACATGACTCAATTTCCTTAAAACTTCGTAACATTACATTTTCAAGATATATGGTCTCAAATTCAATCAGTATGCTTAGATTAGCTATCTAATAACTTGTTCTACACTTTATTTTATTTGAAGACTTATATTGGCAAATA

Coding sequence (CDS)

ATGGCCACAGCAATCACACCATTGGCGTTCTTCTCCGCCGCCGCCACATCCACCGCGACAACCGCTCCTAAACCACCGCAAACTCCGCCGCTACCAAAGCCCCAAATTACCATCCTCCAATCTAAACCTCCACTTTCAACATCAACCGCCCCAATCTCCATCGCAGCCACCGCCATCGCCGTAGCCGCGATCCTAAGCACCACTCCATCGTCCCTCGCCGACAACGGCGCCGGTTTCAACGTCTACTACGGCACTGCCGCCAGCGCCGCCAACTACGGCGGTCTTGGCGGCAACGCCAGCAAGAAAGACACAGCGGAATACATCTACGACGTGCCGGAAGGCTGGAAAGAGCGATTAGTATCCAAGGTCGAGAAAGGTACGAACGGAACCGACAGTGAATTTTACAATCCGAAGAAACGAACAGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGGGCCGAAGGATGTGATTCTGAATAACCTAGCTTTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTTGGCGGAGGAGAAAAAGGATGAGAATGGACAGATTTATTATGTGTATGAGATCGACGGCGCCGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAACTGTATGCGCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGATCGGATCGTATTAG

Protein sequence

MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIAVAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

Homology

[Close]

BLAST of Clc09G04480 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 243/250 (97.20%), Postives = 243/250 (97.20%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAITPLAFFSAAA ST TTAPKPPQTPPLPKPQI ILQSKPPLSTSTAPISIAAT IA
Sbjct: 1   MATAITPLAFFSAAAASTGTTAPKPPQTPPLPKPQIPILQSKPPLSTSTAPISIAATTIA 60

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAILSTTP SLAD GA FNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV
Sbjct: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKTIGSY
Sbjct: 241 HESFKTIGSY 250

[Close]

BLAST of Clc09G04480 vs. NCBI nr
Match: XP_008461279.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA0058638.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa] >TYK10445.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.7 bits (1132), Expect = 8.7e-120
Identity = 227/250 (90.80%), Postives = 236/250 (94.40%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAI PLAF ++ A ST TTAPK PQT PLPKPQI ILQSK PLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAIL+T P SLAD GA FNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of Clc09G04480 vs. NCBI nr
Match: XP_004135924.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hypothetical protein Csa_016904 [Cucumis sativus])

HSP 1 Score: 431.0 bits (1107), Expect = 6.9e-117
Identity = 228/250 (91.20%), Postives = 233/250 (93.20%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAI PLAF     TST TTAPKPPQ   LPKPQI ILQSKPPLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFL----TSTGTTAPKPPQASSLPKPQIPILQSKPPLS-STAPISIAATAIA 60

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAILST   SLAD GA FNVYYGTAASAANYGGLGGNA+KKDTAEYIYDVPEGWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLAEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of Clc09G04480 vs. NCBI nr
Match: KAG7025659.1 (Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.0 bits (1055), Expect = 7.4e-111
Identity = 220/253 (86.96%), Postives = 227/253 (89.72%), Query Frame = 0


Query: 1   MATAITPLAFFSA-AATSTATTAPKPPQTPPLPKPQITILQSKP--PLSTSTAPISIAAT 60
           MATAI+PLAFFSA AA +T    PKP QTPPLPKP I +LQS P  PLS+ TAPIS    
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60

Query: 61  AIAVAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKE 120
           AIAVAAILSTTP SLAD G  FNVYYGTAASAANYGG GGNASKKD+AEYIYDVPEGWKE
Sbjct: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240
           SAE F AEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240

Query: 241 RHVHESFKTIGSY 251
           RHVHESFKT+GSY
Sbjct: 241 RHVHESFKTVGSY 249

[Close]

BLAST of Clc09G04480 vs. NCBI nr
Match: XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.2 bits (1053), Expect = 1.3e-110
Identity = 218/251 (86.85%), Postives = 229/251 (91.24%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQ-ITILQSKPPLSTSTAPISIAATAI 60
           MA AI+PLAFFSAAA ST TTAPK PQ PP  KPQ I ILQSKP LS+ TA    A +AI
Sbjct: 1   MAAAISPLAFFSAAAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTA----AGSAI 60

Query: 61  AVAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERL 120
           A+AAI+ST+P SLAD G  FNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKERL
Sbjct: 61  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
           ESF AEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 241 VHESFKTIGSY 251
           VHESFKTIGSY
Sbjct: 241 VHESFKTIGSY 247

[Close]

BLAST of Clc09G04480 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 1.0e-75
Identity = 141/224 (62.95%), Postives = 171/224 (76.34%), Query Frame = 0


Query: 38  ILQSKPPLSTSTAPI----------SIAATAIAVAAILSTTP--SSLADNGAGFNVYYGT 97
           I  + P +S +  PI          +  A A+A  ++L+  P   +  +    + +YYGT
Sbjct: 5   IFLASPVISATRTPIVPKAIASRLGTSLAAALAATSVLTMVPVLPAAGEGNQTYKIYYGT 64

Query: 98  AASAANYGGLGGNASKKDTAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEY 157
           AASAANYGG GGN+ +K +AEY+YDVPEGWKERLVSKVEKGTNGTDSEFYNPKK+TEKEY
Sbjct: 65  AASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEY 124

Query: 158 LTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLAEEKKDENGQIYYVYEIDGAGT 217
           LTFLAG RQL P+DVILNNLALSDV LQD IA A+  ++EE+KDE GQ+YY+YEIDG G 
Sbjct: 125 LTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGK 184

Query: 218 HSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGS 250
           HSLI+VTC+KN+LYAHFVNAP PEWNRD D L H+ +SFKT+ S
Sbjct: 185 HSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of Clc09G04480 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.2e-120
Identity = 227/250 (90.80%), Postives = 236/250 (94.40%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAI PLAF ++ A ST TTAPK PQT PLPKPQI ILQSK PLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAIL+T P SLAD GA FNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of Clc09G04480 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.2e-120
Identity = 227/250 (90.80%), Postives = 236/250 (94.40%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAI PLAF ++ A ST TTAPK PQT PLPKPQI ILQSK PLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAIL+T P SLAD GA FNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of Clc09G04480 vs. ExPASy TrEMBL
Match: A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.3e-117
Identity = 228/250 (91.20%), Postives = 233/250 (93.20%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAI PLAF     TST TTAPKPPQ   LPKPQI ILQSKPPLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFL----TSTGTTAPKPPQASSLPKPQIPILQSKPPLS-STAPISIAATAIA 60

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAILST   SLAD GA FNVYYGTAASAANYGGLGGNA+KKDTAEYIYDVPEGWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLAEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of Clc09G04480 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.2e-110
Identity = 218/253 (86.17%), Postives = 226/253 (89.33%), Query Frame = 0


Query: 1   MATAITPLAFFSA-AATSTATTAPKPPQTPPLPKPQITILQSKP--PLSTSTAPISIAAT 60
           MATAI+PLAFFSA AA +T    PKP QTPPLPKP I +LQS P  PLS+ +APIS    
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPIS---- 60

Query: 61  AIAVAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKE 120
           AIAVAAILSTTP SLAD G  FNVYYGTAASAANYGG GGNASKKD+AEYIYDVPEGWKE
Sbjct: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240
           SAE   AEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAEGISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240

Query: 241 RHVHESFKTIGSY 251
           RHVHESFKT+GSY
Sbjct: 241 RHVHESFKTVGSY 249

[Close]

BLAST of Clc09G04480 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.7e-108
Identity = 214/250 (85.60%), Postives = 225/250 (90.00%), Query Frame = 0


Query: 1   MATAITPLAFFSAAATSTATTAPKPPQTPPLPKPQITILQSKPPLSTSTAPISIAATAIA 60
           MATAI+PLAFFSAAA ST TTAPK PQ P +    I ILQSKP LS+ TA    A +AIA
Sbjct: 24  MATAISPLAFFSAAAASTGTTAPKLPQKPQI----IPILQSKPSLSSLTA----ACSAIA 83

Query: 61  VAAILSTTPSSLADNGAGFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           +AAI+ST+P SLAD G  FNVYYGTAASAANYGGLGGNA KKD+AEY+YDVP+GWKERLV
Sbjct: 84  IAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLV 143

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 144 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 203

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SF AEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 204 SFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 263

Query: 241 HESFKTIGSY 251
           HESFKTIGSY
Sbjct: 264 HESFKTIGSY 265

[Close]

BLAST of Clc09G04480 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 236.5 bits (602), Expect = 2.3e-62
Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 110 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSD 169
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK+TEKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 170 VNLQDQIASAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 229
           V LQD IA A+  ++EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 230 WNRDQDMLRHVHESFKTIGS 250
           WNRD D L H+ +SFKT+ S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of Clc09G04480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896859.1	1.1e-127	97.20	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_008461279.1	8.7e-120	90.80	PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA00...	[more]
XP_004135924.1	6.9e-117	91.20	thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hy...	[more]
KAG7025659.1	7.4e-111	86.96	Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]
XP_023547955.1	1.3e-110	86.85	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of Clc09G04480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	1.0e-75	62.95	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Clc09G04480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG07	4.2e-120	90.80	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	4.2e-120	90.80	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K624	3.3e-117	91.20	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S...	[more]
A0A6J1H7M1	5.2e-110	86.17	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1JN94	1.7e-108	85.60	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of Clc09G04480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	2.3e-62	77.86	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 88..246 e-value: 6.6E-17 score: 63.9
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 1..247
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 1..247
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 104..245 e-value: 6.5E-11 score: 42.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 103..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G04480.1	Clc09G04480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding