Clc09G04230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G04230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 3360441 .. 3360882 (+)
RNA-Seq Expression	Clc09G04230
Synteny	Clc09G04230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTTCGTAGAGATTCTTGATGCCGGTGTCAGGATTGTCGCCAGATTTCATTCGCATTGCCCTCAGACTGGACGGATGTACTACCATCCACCGGCTAACTCCGACGACGGCCACCACTCCGAGGAGTTTCGCCCCAGCGGCGGCGATGCGTCGTCTCATCAGATTGTTCGTTGTGGTGCCGAGCCCACGGCCGGCGTCGTAGTCGTCAGCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTCTGATTGTGATTATTGAAATGGAGAAGTTCTGGAATGTTCTTGAGAGATTTCTCTTCGATCGTGAAATGAAAAATTGAAAAGTAGTTTTCGATTTTTTTTTCTTTTGCTCTTTTCCCGTTCTTATTGTTCGTTATGAGACGAGGACCGATCATATTCTGATTCTTTTGATGATGATGATGATTTTCGAAATTGA

mRNA sequence

ATGGGGAAGTTCGTAGAGATTCTTGATGCCGGTGTCAGGATTGTCGCCAGATTTCATTCGCATTGCCCTCAGACTGGACGGATGTACTACCATCCACCGGCTAACTCCGACGACGGCCACCACTCCGAGGAGTTTCGCCCCAGCGGCGGCGATGCGTCGTCTCATCAGATTGTTCGTTGTGGTGCCGAGCCCACGGCCGGCGTCGTAGTCGTCAGCGTTGAGAACGAGGACCGATCATATTCTGATTCTTTTGATGATGATGATGATTTTCGAAATTGA

Coding sequence (CDS)

ATGGGGAAGTTCGTAGAGATTCTTGATGCCGGTGTCAGGATTGTCGCCAGATTTCATTCGCATTGCCCTCAGACTGGACGGATGTACTACCATCCACCGGCTAACTCCGACGACGGCCACCACTCCGAGGAGTTTCGCCCCAGCGGCGGCGATGCGTCGTCTCATCAGATTGTTCGTTGTGGTGCCGAGCCCACGGCCGGCGTCGTAGTCGTCAGCGTTGAGAACGAGGACCGATCATATTCTGATTCTTTTGATGATGATGATGATTTTCGAAATTGA

Protein sequence

MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSGGDASSHQIVRCGAEPTAGVVVVSVENEDRSYSDSFDDDDDFRN

Homology

[Close]

BLAST of Clc09G04230 vs. NCBI nr
Match: KGN45108.1 (hypothetical protein Csa_015813 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG----GDASSHQ 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G    GDA+SHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVRCGAEPT----AGVVVVSVENED 78
          IV C AEPT    A V+VV+VE+ +
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNE 85

[Close]

BLAST of Clc09G04230 vs. NCBI nr
Match: KAA0058604.1 (hypothetical protein E6C27_scaffold339G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 7.3e-24
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG----GDASSHQ 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G    GDA+SHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGDGDAASHQ 60

Query: 61 IVRCG-AEPTAGV-VVVSVENED 78
          IVRC  AE TA   +VV+VE+ +
Sbjct: 61 IVRCDVAERTAAAFLVVTVESNE 83

[Close]

BLAST of Clc09G04230 vs. NCBI nr
Match: KAG7014255.1 (hypothetical protein SDJN02_24430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 9.6e-24
Identity = 61/79 (77.22%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHH--SEEFRPSGGDASSHQIV 60
          MGKFVEILDAGVRIVARFHSHCPQT RMYYHPPANS++GHH  S+EFR SGGD SSHQIV
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQIV 60

Query: 61 RCGAEPTAGVVVVSVENED 78
           C A   A VV VS E+ D
Sbjct: 61 PCSA--AAAVVAVSAESTD 77

[Close]

BLAST of Clc09G04230 vs. NCBI nr
Match: TYK10407.1 (hypothetical protein E5676_scaffold459G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG------GDASS 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G      GDA+S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGGGDGDAAS 60

Query: 61 HQIVRCG-AEPTAGV-VVVSVENED 78
          HQIVRC  AE TA   +VV+VE+ +
Sbjct: 61 HQIVRCDVAERTAAAFLVVTVESNE 85

[Close]

BLAST of Clc09G04230 vs. NCBI nr
Match: KAG6575700.1 (hypothetical protein SDJN03_26339, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHS--EEFRPSGGDASSHQIV 60
          MGKFVEILDAGVRIVARFHSHCPQT RMYYHPPANS++ HHS  +EFR SGGD SSHQIV
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEVHHSDRQEFRLSGGDVSSHQIV 60

Query: 61 RCGAEPTAGVVVVSVENED 78
           C A   A VV VS E+ D
Sbjct: 61 PCSA--AAAVVAVSAESTD 77

[Close]

BLAST of Clc09G04230 vs. ExPASy TrEMBL
Match: A0A0A0K6I8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG----GDASSHQ 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G    GDA+SHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVRCGAEPT----AGVVVVSVENED 78
          IV C AEPT    A V+VV+VE+ +
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNE 85

[Close]

BLAST of Clc09G04230 vs. ExPASy TrEMBL
Match: A0A5A7UTW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00730 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-24
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG----GDASSHQ 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G    GDA+SHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGDGDAASHQ 60

Query: 61 IVRCG-AEPTAGV-VVVSVENED 78
          IVRC  AE TA   +VV+VE+ +
Sbjct: 61 IVRCDVAERTAAAFLVVTVESNE 83

[Close]

BLAST of Clc09G04230 vs. ExPASy TrEMBL
Match: A0A5D3CEL3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00500 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG------GDASS 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G      GDA+S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGGGDGDAAS 60

Query: 61 HQIVRCG-AEPTAGV-VVVSVENED 78
          HQIVRC  AE TA   +VV+VE+ +
Sbjct: 61 HQIVRCDVAERTAAAFLVVTVESNE 85

[Close]

BLAST of Clc09G04230 vs. ExPASy TrEMBL
Match: A0A6J1JW88 (uncharacterized protein LOC111488441 OS=Cucurbita maxima OX=3661 GN=LOC111488441 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.7e-23
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHS--EEFRPSGGDASSHQIV 60
          MGKFVEILDAGVRIVARFHSHCPQT RMYYHPPANS++GHHS  +EFR S GD SSHQIV
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60

Query: 61 RCGAEPTAGVVVVSVENE 77
           C A   A VV VS E +
Sbjct: 61 PCSA--AAAVVAVSAERK 76

[Close]

BLAST of Clc09G04230 vs. ExPASy TrEMBL
Match: W9R4I1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHH-SEEFRPSGGDASSH--QI 60
          MGKFVEILD GVRIVARFHSHCPQT RMYYHPPAN+D+ HH +  F   GGD      ++
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDVKV 60

Query: 61 VRCGAEPTAG 68
          ++CG +   G
Sbjct: 61 MKCGPKAIGG 70

[Close]

BLAST of Clc09G04230 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHH 42
          MGK+ E+LD GVRI ARFHSHCPQT R+YYHPP  SD+ HH
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPP--SDNHHH 39

The following BLAST results are available for this feature:

BLAST of Clc09G04230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45108.1	2.3e-25	75.29	hypothetical protein Csa_015813 [Cucumis sativus]	[more]
KAA0058604.1	7.3e-24	75.90	hypothetical protein E6C27_scaffold339G00730 [Cucumis melo var. makuwa]	[more]
KAG7014255.1	9.6e-24	77.22	hypothetical protein SDJN02_24430, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK10407.1	1.3e-23	74.12	hypothetical protein E5676_scaffold459G00500 [Cucumis melo var. makuwa]	[more]
KAG6575700.1	1.1e-22	75.95	hypothetical protein SDJN03_26339, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc09G04230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G04230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8	1.1e-25	75.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1	[more]
A0A5A7UTW3	3.6e-24	75.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEL3	6.1e-24	74.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JW88	6.7e-23	75.64	uncharacterized protein LOC111488441 OS=Cucurbita maxima OX=3661 GN=LOC111488441...	[more]
W9R4I1	6.7e-15	61.43	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004679 PE=4 SV=1	[more]

BLAST of Clc09G04230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	1.1e-12	73.17	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..55
None	No IPR available	PANTHER	PTHR33983:SF10	SUBFAMILY NOT NAMED	coord: 1..60
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G04230.2	Clc09G04230.2	mRNA